genome.fa.s1074.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001074.1 Hibiscus syriacus cultivar Beakdansim tig00002128_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37388

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587--711	31	4.0	31	72	10	94	26	28	27	18	1.98
638--722	31	2.7	31	79	1	98	28	28	24	18	1.98
1606--1698	29	3.2	29	86	1	125	41	20	6	31	1.77
7981--8057	31	2.5	31	80	2	82	27	28	27	16	1.97
7934--8057	63	2.0	63	80	6	144	25	25	28	20	1.99
8940--9044	29	3.6	28	79	7	104	42	19	5	32	1.74
9040--9072	17	1.9	17	93	0	57	9	27	45	18	1.79
9074--9140	19	3.6	18	78	9	71	23	29	28	17	1.97
13975--14014	16	2.5	16	100	0	80	37	45	7	10	1.66
14152--14213	26	2.4	26	83	0	79	14	35	14	35	1.87
21061--21134	20	3.7	20	85	0	76	27	13	17	41	1.87
21081--21149	20	3.5	20	85	0	84	28	14	17	39	1.89
21206--21448	45	5.5	44	70	14	185	39	15	20	24	1.92
21205--21450	89	2.8	89	85	7	338	39	15	21	23	1.91
21625--21658	17	1.9	18	88	5	52	50	0	0	50	1.00
23238--23274	2	18.5	2	100	0	74	48	0	0	51	1.00
25548--25796	56	4.4	57	71	13	158	33	9	15	40	1.80
26118--26654	171	3.2	167	78	6	428	35	10	16	37	1.83
25993--26654	56	11.8	56	75	7	504	35	10	17	37	1.84
26556--26845	149	1.9	148	80	9	331	36	12	14	35	1.85
26991--27633	56	11.5	55	73	9	360	35	9	15	39	1.81
27306--27509	57	3.6	56	79	2	160	37	11	12	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27673--27917	92	2.6	93	78	14	256	36	12	12	37	1.82
27872--28005	56	2.4	56	87	2	189	29	8	17	44	1.79
27910--28047	56	2.4	56	85	3	170	31	7	17	42	1.78
28074--28316	92	2.7	92	77	12	254	36	10	13	40	1.78
28252--28370	56	2.1	56	81	10	136	36	10	12	39	1.79
28175--28583	213	1.9	213	82	5	506	36	9	14	39	1.78
28467--28605	55	2.5	57	83	5	167	30	9	15	43	1.79
28884--29178	149	2.0	150	81	7	350	37	10	15	36	1.83
29090--29415	56	5.9	56	77	10	258	36	8	16	38	1.79
29075--29415	112	3.1	110	79	7	343	36	8	16	39	1.79
30790--31239	58	7.8	58	88	2	636	34	12	18	34	1.88
30796--31239	233	1.9	232	88	3	669	34	11	18	34	1.87
37016--37059	22	2.0	22	82	8	54	45	6	2	45	1.42

Tables:   1

The End!