genome.fa.s1075.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001075.1 Hibiscus syriacus cultivar Beakdansim tig00002130_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163807

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2522--2747	69	3.3	69	76	1	202	24	26	20	29	1.99
14584--14608	13	1.9	13	100	0	50	16	24	20	40	1.91
16215--16311	24	4.0	24	74	2	70	21	12	16	49	1.78
20548--20640	24	3.9	24	79	0	96	22	15	16	46	1.84
20582--20642	12	5.1	12	74	7	61	22	9	18	49	1.77
20549--20640	48	1.9	48	84	0	121	21	15	16	46	1.83
26602--26661	7	8.6	7	74	7	59	51	1	1	45	1.21
27111--27276	69	2.4	69	79	2	181	22	26	18	31	1.97
27476--27890	76	5.5	76	85	3	520	42	19	10	28	1.83
27812--27860	25	1.9	26	91	4	82	42	24	4	28	1.73
27796--27997	107	1.9	107	86	4	291	40	18	12	27	1.88
27714--28069	183	1.9	183	88	2	536	40	19	11	28	1.87
27897--28240	76	4.5	76	83	4	408	40	19	12	27	1.88
27638--28149	259	2.0	258	85	3	699	41	19	11	27	1.86
27562--28226	335	2.0	335	84	5	887	41	19	11	27	1.86
31245--31307	28	2.2	28	88	0	90	30	1	23	44	1.63
31877--31914	18	2.1	18	100	0	76	18	5	26	50	1.68
40233--40271	20	2.0	20	89	0	60	33	10	23	33	1.88
50246--50319	27	2.7	26	79	8	76	8	20	6	64	1.43
51167--51200	12	2.8	12	86	0	50	85	0	2	11	0.71
53384--53441	27	2.1	27	87	6	82	10	22	8	58	1.58
57708--57756	23	2.1	23	81	7	55	71	2	8	18	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68095--68176	43	1.9	43	85	5	112	28	10	24	36	1.89
68145--68261	42	2.8	42	81	3	119	21	17	27	33	1.96
68164--68272	42	2.6	43	82	5	132	23	19	23	33	1.97
75489--75552	32	1.9	34	84	12	89	56	18	9	15	1.66
75987--76148	82	2.0	82	79	8	177	27	19	19	33	1.96
76042--76180	41	3.4	40	73	16	106	25	19	17	37	1.93
77498--77540	18	2.4	18	88	3	61	60	4	18	16	1.52
80090--80188	49	2.0	49	100	0	198	26	22	14	37	1.92
81667--81736	26	2.7	26	95	0	122	72	0	11	15	1.11
83789--83848	7	8.6	7	78	7	68	53	3	0	43	1.17
83787--83857	35	2.0	37	89	10	112	49	4	1	45	1.30
84331--84493	69	2.4	69	78	0	200	23	25	20	30	1.99
86037--86084	16	2.9	16	87	6	60	75	2	2	20	1.02
86582--86644	19	3.2	19	75	4	54	55	12	0	31	1.37
86602--86767	77	2.2	77	88	1	244	57	10	2	29	1.46
92493--92526	15	2.3	15	100	0	68	5	26	23	44	1.76
94090--94121	7	4.4	7	92	7	55	28	0	12	59	1.34
96002--96083	40	2.0	40	95	4	148	21	17	26	34	1.95
96188--96299	47	2.5	46	85	4	147	39	7	22	31	1.81
99140--99202	22	2.9	22	77	11	67	74	1	17	6	1.10
99166--99220	28	2.0	26	89	6	83	72	3	18	5	1.18
99165--99219	22	2.4	23	85	11	78	70	3	20	5	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99171--99248	28	2.8	27	83	11	79	71	2	19	6	1.19
99147--99233	34	2.5	34	80	10	97	72	2	18	6	1.18
102936--103097	40	4.1	40	100	0	324	22	17	27	32	1.96
104462--104506	15	2.7	16	86	13	56	71	2	2	24	1.09
105006--105068	19	3.2	19	75	4	54	55	12	0	31	1.37
104957--105162	64	3.0	64	79	16	170	56	12	2	28	1.49
105026--105190	76	2.2	76	87	3	244	55	10	3	30	1.49
107927--107990	24	2.7	24	85	0	74	43	18	15	21	1.87
109461--109505	22	2.0	22	100	0	90	31	17	8	42	1.80
110466--110499	17	2.0	17	94	0	59	11	23	32	32	1.91
118987--119222	69	3.4	69	78	1	258	23	26	20	29	1.99
118986--119235	138	1.8	137	80	5	306	24	26	20	29	1.99
120010--120040	13	2.4	13	94	0	53	22	19	16	41	1.89
119987--120040	20	2.8	20	74	2	56	24	20	14	40	1.90
121426--121458	17	1.9	17	88	11	50	39	0	24	36	1.56
122391--122905	43	11.9	43	84	2	557	22	25	19	33	1.97
123306--123361	26	2.1	26	83	3	67	30	5	12	51	1.61
123855--123911	16	3.6	16	90	6	82	29	21	14	35	1.92
123957--124473	76	6.8	76	87	1	660	42	19	9	28	1.83
124222--124428	25	8.2	24	66	16	89	43	21	6	28	1.78
124346--124607	134	2.0	134	85	0	353	41	19	10	29	1.84
124474--124711	76	3.1	76	80	2	242	39	19	10	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124502--124711	77	2.7	76	80	2	213	40	20	8	30	1.82
125722--126063	83	4.1	82	75	6	276	34	16	15	33	1.91
126888--126976	44	2.0	44	84	4	117	19	13	26	40	1.88
138411--138491	27	3.0	27	81	3	83	22	4	28	44	1.73
139627--139830	85	2.4	85	81	8	220	31	19	16	32	1.94
142342--142381	20	2.0	20	95	0	71	32	10	27	30	1.89
145467--145673	75	2.7	75	84	1	252	23	30	23	22	1.99
151445--151504	20	3.0	20	80	2	66	25	38	21	15	1.92
153752--153778	13	2.1	13	100	0	54	37	7	7	48	1.59
154128--154292	75	2.2	75	86	0	222	21	32	24	21	1.98
156655--156680	5	5.2	5	100	0	52	80	0	0	19	0.71
160498--160536	20	2.0	19	90	5	60	33	10	25	30	1.89

Tables:   1

The End!