Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001077.1 Hibiscus syriacus cultivar Beakdansim tig00002134_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57733

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
208--243
17
2.2
16
95
5
63
33
22
0
44
1.53
924--965
22
1.9
22
90
0
66
26
33
14
26
1.94
1361--1392
14
2.3
14
94
0
55
6
21
21
50
1.71
3249--3401
63
2.4
64
93
2
256
30
1
17
50
1.54
3506--3553
20
2.4
20
92
0
78
39
20
18
20
1.92
3892--3927
18
2.0
18
94
0
63
22
2
19
55
1.56
7170--7260
19
4.6
20
80
10
80
31
10
21
35
1.89
7170--7338
20
8.6
20
73
8
107
27
11
23
37
1.89
8425--8505
44
1.9
41
91
0
108
27
11
20
40
1.86
8803--9426
261
2.4
263
89
5
961
40
20
12
26
1.89
10455--10502
2
24.0
2
100
0
96
50
0
0
50
1.00
10810--10846
14
2.6
14
95
0
65
48
21
13
16
1.80
18363--18420
28
2.1
28
84
12
75
53
10
6
29
1.61
30052--30106
23
2.4
22
84
6
65
38
18
14
29
1.90
32387--32428
21
2.0
21
90
0
66
30
11
7
50
1.66
32417--32525
33
3.4
33
88
3
161
32
8
14
44
1.75
40156--40205
26
1.9
26
95
0
91
34
26
20
20
1.96
46645--46677
14
2.5
14
90
9
52
27
0
3
69
1.03
52675--52756
25
3.2
26
64
23
64
25
13
9
51
1.71
52675--52780
52
2.0
53
98
1
205
25
15
11
48
1.78
55839--55880
21
2.0
21
95
0
75
30
14
7
47
1.71
55875--55977
33
3.2
33
88
2
156
32
7
15
44
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57134--57195
26
2.5
26
87
10
85
45
3
9
41
1.53
57162--57351
35
4.9
43
74
18
125
43
1
7
46
1.42
57162--57351
38
4.9
41
75
14
136
43
1
7
46
1.42
57203--57382
35
4.9
35
73
18
127
44
1
7
46
1.42
57215--57382
73
2.3
73
85
11
213
44
1
7
45
1.42
57167--57383
113
1.9
110
85
8
294
44
2
7
45
1.45
57288--57372
40
2.1
40
82
8
102
44
1
5
48
1.34
57351--57396
23
2.0
24
95
4
85
45
4
6
43
1.49
57361--57415
28
2.0
27
89
3
83
47
1
5
45
1.36
57368--57428
28
2.1
28
81
3
68
49
1
4
44
1.33
57288--57482
101
1.9
98
80
13
220
46
2
5
46
1.38
57530--57567
20
1.9
20
84
10
51
18
2
0
78
0.86

Tables:   1

The End!