Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001078.1 Hibiscus syriacus cultivar Beakdansim tig00002135_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58081

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1733--1772
18
2.2
18
100
0
80
20
32
12
35
1.90
2275--2312
15
2.5
15
91
0
58
10
18
13
57
1.63
3451--3496
16
3.1
15
85
14
60
80
6
13
0
0.89
3457--3526
8
9.0
8
74
12
56
78
7
14
0
0.95
3457--3526
16
4.5
15
77
10
70
78
7
14
0
0.95
3475--3554
38
2.1
38
81
9
92
76
8
13
1
1.08
4174--4250
22
3.5
22
92
0
136
37
25
12
23
1.91
5039--5199
72
2.2
75
83
8
197
26
16
13
43
1.85
5928--6854
109
9.0
98
77
11
693
32
26
20
20
1.97
6152--6899
109
7.1
105
81
10
755
32
26
20
21
1.98
5939--6899
207
4.6
203
84
7
1125
32
26
20
20
1.98
5964--6894
316
3.0
309
82
8
1039
32
26
20
20
1.97
7444--7548
37
2.8
37
82
0
120
41
14
14
29
1.85
7962--7990
2
14.5
2
100
0
58
48
0
0
51
1.00
8105--8139
16
2.1
18
89
10
56
25
8
0
65
1.21
9105--9461
183
2.0
177
83
4
455
45
15
15
23
1.84
12646--12679
3
11.3
3
87
0
50
0
35
2
61
1.11
15557--15598
18
2.3
18
87
0
57
71
2
7
19
1.20
16183--16216
13
2.6
13
90
0
50
76
0
11
11
1.02
20196--20236
22
1.9
21
90
5
64
24
2
36
36
1.69
24040--24127
9
9.2
9
75
11
68
17
25
27
30
1.97
24040--24094
20
2.8
20
83
8
76
16
25
25
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24040--24094
10
5.6
10
79
16
62
16
25
25
32
1.96
24040--24127
29
3.1
28
84
11
99
17
25
27
30
1.97
24058--24121
19
3.4
19
80
10
60
17
25
28
29
1.97
24130--24172
22
2.0
22
100
0
86
18
48
23
9
1.76
24123--24160
17
2.2
17
100
0
76
18
47
23
10
1.79
24162--24192
7
4.4
7
100
0
62
16
29
29
25
1.96
31350--31451
10
10.6
9
78
12
87
17
27
26
28
1.98
31350--31446
20
4.9
19
81
10
115
17
26
25
29
1.97
31459--31496
12
3.3
12
85
14
62
18
44
23
13
1.85
31454--31496
22
2.0
22
95
0
77
18
46
23
11
1.82
31447--31484
17
2.2
17
95
0
67
18
44
23
13
1.85
33141--33181
22
1.9
21
90
5
64
24
2
36
36
1.69
33940--33970
9
3.6
9
95
4
55
0
35
0
64
0.94
34494--34545
19
2.7
19
100
0
104
30
17
30
21
1.96
35139--35211
18
3.9
18
84
7
92
21
21
28
27
1.99
35135--35212
38
2.1
38
90
0
120
24
21
26
26
1.99
41292--41348
21
2.7
21
94
0
96
28
21
19
31
1.97
42050--42120
18
3.8
18
78
7
79
19
16
30
32
1.95
51419--51452
13
2.6
13
100
0
68
79
0
14
5
0.91

Tables:   1

The End!