genome.fa.s1079.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001079.1 Hibiscus syriacus cultivar Beakdansim tig00002138_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113573

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4779--4804	12	2.2	12	100	0	52	34	7	23	34	1.83
5360--5398	20	1.9	20	89	5	60	30	7	7	53	1.57
5745--5792	21	2.2	22	81	7	53	16	12	12	58	1.63
14896--14948	26	2.0	26	100	0	106	37	0	0	62	0.96
19449--19605	60	2.6	60	83	6	201	36	8	14	40	1.77
20120--20144	2	12.5	2	100	0	50	52	0	0	48	1.00
21564--21601	20	1.9	20	94	0	67	57	7	2	31	1.41
21835--21883	18	2.7	18	81	6	55	42	4	20	32	1.71
22520--22649	32	3.9	33	72	8	104	37	24	6	30	1.82
30710--30748	2	19.5	2	94	0	69	48	0	0	51	1.00
33050--33098	9	4.7	11	76	19	52	28	2	2	67	1.13
36365--36433	35	2.0	33	86	10	95	36	2	0	60	1.11
39133--39165	15	2.1	17	88	11	52	36	6	0	57	1.23
42856--42890	12	2.9	12	91	0	52	20	11	2	65	1.37
43049--43421	186	2.0	186	96	0	692	28	17	19	34	1.94
44100--44298	21	9.8	20	72	4	121	38	24	16	20	1.92
44100--44317	20	10.8	20	70	10	122	38	25	16	19	1.92
44181--44292	41	2.7	41	91	6	174	38	21	16	23	1.93
44265--44458	20	9.6	20	81	5	221	35	25	19	19	1.95
44265--44458	60	3.2	60	83	0	253	35	25	19	19	1.95
44836--44906	33	2.2	33	89	0	106	11	23	16	47	1.79
44986--45091	21	5.6	20	70	16	91	45	18	25	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44984--45062	21	3.8	21	79	12	92	45	16	26	11	1.81
44979--45095	41	3.1	38	79	14	136	46	17	26	10	1.80
45049--45102	14	3.5	14	73	22	54	42	24	25	7	1.80
45038--45107	33	2.1	33	97	0	131	47	20	25	7	1.75
45044--45118	33	2.3	33	92	0	123	46	24	22	6	1.75
45114--45211	19	5.7	19	68	22	72	11	23	22	42	1.85
45119--45233	33	3.5	33	92	0	194	10	23	20	45	1.82
45169--45225	14	3.7	14	79	20	69	8	26	24	40	1.84
46926--47397	93	5.1	93	98	0	903	22	12	18	45	1.83
47441--47569	19	7.3	19	75	17	125	45	28	17	8	1.77
47477--47569	33	2.8	32	91	4	150	46	27	18	7	1.76
47441--47569	52	2.5	52	74	14	140	45	28	17	8	1.77
47565--47699	19	7.6	19	75	16	128	11	19	23	45	1.82
47587--47643	14	3.7	14	77	20	60	10	21	22	45	1.82
47570--47662	33	2.8	33	95	0	168	10	20	21	47	1.80
49624--49660	14	2.6	14	86	0	56	32	2	21	43	1.67
49765--49863	19	5.5	19	83	13	138	44	17	23	15	1.86
49765--49876	52	2.2	52	93	3	190	43	16	24	15	1.86
49878--50037	19	9.2	19	75	19	170	15	22	17	45	1.85
49878--50037	33	4.7	33	73	16	146	15	22	17	45	1.85
49878--50037	52	3.1	52	97	0	293	15	22	17	45	1.85
50096--50214	19	6.5	19	87	10	185	45	16	22	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50096--50214	33	3.2	36	84	12	163	45	16	22	15	1.85
50114--50231	53	2.2	53	95	1	211	44	16	24	14	1.86
52546--52570	12	2.1	12	100	0	50	0	28	0	72	0.86
52745--52791	24	2.0	24	87	8	69	38	21	14	25	1.92
53473--53742	20	13.5	20	85	1	308	19	17	24	38	1.93
53729--53811	21	4.0	21	73	6	78	25	16	24	33	1.96
53709--53807	42	2.4	43	77	11	100	21	18	23	37	1.94
55691--55722	17	1.9	17	93	6	57	56	3	28	12	1.51
61024--61057	15	2.2	16	89	5	52	23	8	0	67	1.18
61962--62046	29	2.9	29	78	13	77	75	1	11	11	1.11
62003--62045	23	2.0	21	86	9	59	79	2	11	6	1.02
63040--63083	2	22.0	2	100	0	88	50	0	0	50	1.00
63738--63763	2	13.0	2	100	0	52	50	0	0	50	1.00
72024--72059	16	2.2	17	90	5	56	66	0	0	33	0.92
76582--76614	17	1.9	17	93	0	57	78	0	0	21	0.75
76599--76650	21	2.5	21	100	0	104	67	0	0	32	0.91
76580--76651	21	3.3	22	83	9	94	69	0	0	30	0.89
85533--85570	18	2.1	18	100	0	76	28	50	21	0	1.49
86986--87022	18	2.1	18	90	10	58	32	8	0	59	1.27
95311--95345	2	17.5	2	100	0	70	48	0	0	51	1.00
103272--103413	71	2.0	71	85	0	194	35	23	14	26	1.94
104547--104623	34	2.3	34	90	4	129	33	25	3	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105017--105322	160	1.9	156	89	3	470	41	21	11	25	1.87
107570--107849	107	2.6	107	86	1	391	38	10	15	36	1.80
108460--108517	23	2.5	23	88	0	80	36	10	15	37	1.82
108478--108522	23	2.0	23	90	0	72	37	8	17	35	1.81
108578--108627	23	2.2	23	92	0	82	36	14	12	38	1.83
108411--108706	118	2.5	117	86	3	405	34	13	11	40	1.81
108578--108635	23	2.5	23	88	0	71	37	13	10	37	1.79
108636--108952	75	4.3	75	81	3	327	33	12	12	41	1.80
108642--108924	149	1.9	149	85	4	392	34	12	11	40	1.79
108624--108952	149	2.2	149	81	4	389	34	12	11	41	1.79

Tables:   1

The End!