Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000108.1 Hibiscus syriacus cultivar Beakdansim tig00000192_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112330

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
173--219
17
2.8
16
87
9
58
29
25
8
36
1.86
465--524
20
3.0
21
82
7
79
35
0
8
56
1.29
2704--2737
15
2.2
16
94
5
61
41
11
0
47
1.40
12135--12188
28
1.9
28
96
0
99
22
16
16
44
1.86
22443--22605
64
2.5
63
80
11
170
31
19
20
28
1.97
23177--23245
18
3.7
18
77
7
75
23
20
27
28
1.99
28170--28330
64
2.5
64
82
10
186
34
18
20
27
1.95
29505--29578
31
2.4
31
84
4
87
29
20
16
33
1.94
29556--29617
30
2.0
31
87
3
90
19
19
24
37
1.94
32765--32799
18
1.9
18
100
0
70
17
22
34
25
1.96
35205--35259
21
2.6
21
78
16
69
36
21
14
27
1.93
35850--35912
24
2.6
24
92
0
99
58
0
38
3
1.14
44287--44369
31
2.6
31
81
5
96
42
6
6
45
1.53
56511--56675
85
1.9
85
96
2
305
26
15
13
44
1.84
56854--56891
2
19.0
2
100
0
76
50
0
0
50
1.00
61510--61562
17
3.2
16
84
5
63
13
30
32
24
1.93
65353--65696
172
2.0
172
97
0
652
39
11
8
40
1.72
71690--71729
21
1.9
21
89
0
62
25
40
25
10
1.86
81020--81082
21
2.9
21
83
4
63
20
38
25
15
1.92
81064--81103
21
1.9
21
89
0
62
25
40
25
10
1.86
81465--81517
21
2.5
21
79
8
63
49
5
3
41
1.44
83042--83092
9
6.2
8
76
19
52
13
0
27
58
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83044--83087
17
2.6
17
85
7
63
13
0
29
56
1.38
83692--83898
75
2.8
74
82
4
236
23
31
23
20
1.98
90455--90515
21
3.2
21
65
29
64
42
21
4
31
1.74
90406--90521
35
3.3
35
90
4
171
45
18
5
30
1.71
96137--96195
26
2.3
26
96
0
109
35
33
11
18
1.88
96390--96471
29
2.8
29
94
1
137
32
14
9
42
1.79
97751--97780
15
2.0
15
93
0
51
56
23
0
20
1.42
101145--101226
29
2.8
29
94
1
137
32
14
9
42
1.79
101607--101647
17
2.5
16
84
7
55
48
2
7
41
1.44
104020--104064
17
2.6
17
75
0
54
42
0
0
57
0.98
104192--104220
2
14.5
2
100
0
58
0
48
0
51
1.00

Tables:   1

The End!