genome.fa.s1080.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001080.1 Hibiscus syriacus cultivar Beakdansim tig00002139_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  201579

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9217--9241	12	2.1	12	100	0	50	32	8	20	40	1.81
16914--16954	16	2.6	16	96	0	73	46	34	7	12	1.69
17777--17961	95	2.0	95	90	5	295	42	11	16	29	1.84
19043--19094	20	2.6	21	78	9	63	25	32	15	26	1.95
19104--19149	21	2.2	21	96	0	83	19	26	19	34	1.96
19141--19205	20	3.2	20	88	0	103	40	23	16	20	1.92
19333--19402	22	3.2	22	89	0	104	25	41	10	22	1.85
19619--19650	13	2.5	13	100	0	64	0	6	15	78	0.95
19698--19739	20	2.1	20	86	0	57	14	19	21	45	1.85
21883--21938	21	2.7	21	77	0	67	26	32	12	28	1.93
23354--23495	67	2.2	64	81	9	157	31	1	16	50	1.53
23891--23944	25	2.2	24	96	3	99	16	3	20	59	1.52
23891--23944	6	8.8	6	79	4	63	16	3	20	59	1.52
23884--23925	19	2.3	19	91	4	68	19	2	21	57	1.52
25802--25855	24	2.2	24	93	0	90	40	20	18	20	1.91
25802--25869	24	2.8	24	84	0	64	38	20	17	23	1.93
25982--26015	12	2.8	12	90	0	50	14	0	29	55	1.40
26762--26932	20	8.6	20	67	8	98	28	14	22	34	1.94
46871--46915	23	2.0	23	82	4	56	33	17	26	22	1.96
46916--47013	23	4.4	23	84	3	112	31	26	24	17	1.97
47241--47291	25	2.0	25	96	0	93	49	21	3	25	1.67
53970--54017	23	2.1	23	96	0	87	39	25	22	12	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54836--54885	20	2.5	20	86	0	73	36	22	14	28	1.92
63578--63670	29	3.2	30	74	6	84	40	3	17	38	1.65
64395--64428	17	2.1	16	88	5	50	11	20	29	38	1.88
71963--72002	20	2.0	20	90	0	62	15	35	42	7	1.75
72935--72998	23	2.7	23	74	13	67	17	3	3	76	1.04
84260--85075	106	7.8	105	91	1	1207	34	25	17	22	1.96
87055--87080	5	5.2	5	100	0	52	0	0	19	80	0.71
87474--87498	10	2.5	10	100	0	50	16	0	8	76	1.02
104657--105312	326	2.0	326	95	0	1188	32	17	11	38	1.86
107146--108112	483	2.0	483	93	0	1659	34	24	12	28	1.92
111900--111977	20	3.8	19	75	12	66	29	20	16	33	1.95
111893--111976	41	2.1	40	86	6	116	27	22	15	34	1.94
114568--114609	21	2.0	21	100	0	84	9	42	14	33	1.78
124170--124209	21	1.9	21	85	10	55	35	10	2	52	1.48
127012--127069	21	2.7	22	81	5	66	22	22	20	34	1.97
128940--129002	23	2.6	24	78	19	60	52	0	0	47	1.00
128957--129020	22	2.9	23	84	6	71	48	0	0	51	1.00
128983--129110	53	2.5	52	80	17	130	49	0	0	49	1.12
131795--131834	7	5.6	7	82	5	53	67	0	0	32	0.91
136180--136262	42	2.0	42	85	0	112	44	13	14	27	1.82
144047--144121	23	3.3	23	90	3	107	21	18	21	38	1.93
144245--144303	29	2.0	29	100	0	118	37	10	6	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146457--146491	18	1.9	18	94	0	61	42	17	11	28	1.83
149339--149376	18	2.1	18	85	9	51	26	42	15	15	1.87
153789--154178	195	2.0	195	99	0	771	42	13	19	24	1.88
157478--157534	22	2.7	22	81	5	73	26	33	22	17	1.96
160917--160954	19	2.0	19	94	0	67	13	28	31	26	1.93
161992--162049	24	2.5	24	88	2	82	17	27	27	27	1.97
162896--162960	18	3.6	18	89	0	94	24	13	7	53	1.66
166875--166908	11	3.1	11	100	0	68	0	35	0	64	0.94
176970--177018	20	2.5	20	96	0	89	30	42	12	14	1.82
179370--179448	38	2.1	38	95	2	142	37	8	20	32	1.83
179656--179708	20	2.7	20	93	0	88	32	18	16	32	1.94
183834--183931	44	2.2	44	98	0	187	44	6	10	38	1.63
184229--184278	25	2.0	25	100	0	100	40	20	12	28	1.87
185582--185637	14	4.3	14	76	17	66	10	12	23	53	1.69
185589--185658	24	2.9	24	87	4	97	12	10	18	58	1.62
186382--186456	10	7.7	10	69	21	61	9	12	21	57	1.62
186388--186452	16	4.1	16	95	0	121	7	12	23	56	1.61
190932--191083	71	2.1	70	83	4	169	47	1	5	45	1.35

Tables:   1

The End!