genome.fa.s1081.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001081.1 Hibiscus syriacus cultivar Beakdansim tig00002140_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73439

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1376--1570	42	4.8	42	71	9	129	31	16	21	30	1.96
1481--1592	40	2.8	39	76	14	120	30	14	24	31	1.94
1499--1592	40	2.4	39	85	5	125	28	13	24	32	1.94
1481--1606	41	3.1	40	78	7	130	30	13	23	32	1.93
1700--1776	40	1.9	41	86	2	111	29	16	24	28	1.97
1782--1854	40	1.9	39	81	10	89	38	15	15	31	1.88
2362--2414	13	3.8	14	75	9	54	69	1	0	28	0.99
4481--4534	26	2.0	27	86	10	76	61	9	3	25	1.43
7277--7309	12	2.5	13	90	9	50	72	0	3	24	0.98
7408--7448	13	3.3	13	80	10	50	70	0	4	24	1.06
7446--7493	17	2.9	15	80	17	51	68	0	10	20	1.18
7446--7483	17	2.4	17	86	8	53	71	0	10	18	1.14
10319--10382	29	2.2	28	81	8	74	40	12	4	42	1.64
10409--10460	26	2.0	25	92	3	86	48	9	23	19	1.78
13167--13207	2	22.0	2	85	14	61	51	0	0	48	1.00
13244--13514	40	7.0	39	70	16	156	45	4	9	40	1.57
13292--13435	37	3.9	35	77	13	121	43	4	11	41	1.59
13329--13536	38	5.5	38	75	18	166	43	2	9	44	1.51
13460--13542	34	2.5	33	80	18	84	40	1	8	49	1.41
13365--13537	80	2.3	78	84	13	220	43	2	8	45	1.46
13517--13572	27	2.0	29	83	13	73	42	0	8	48	1.34
13567--13614	14	3.2	14	80	11	51	33	0	2	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13569--13626	8	7.4	8	77	16	50	34	1	1	62	1.16
16484--16529	23	2.0	23	95	0	83	36	17	21	23	1.94
21800--21851	26	2.0	26	96	0	95	25	19	17	38	1.93
23066--23513	201	2.2	200	80	4	508	35	18	18	27	1.94
23968--24086	60	2.0	59	86	6	168	46	5	8	40	1.56
23998--24052	23	2.4	23	100	0	110	47	3	9	40	1.53
24021--24131	38	2.9	38	87	9	149	44	3	8	44	1.51
24094--24149	26	2.2	26	84	6	80	41	1	8	48	1.45
24121--24204	36	2.3	36	81	4	98	39	2	9	48	1.49
23996--24202	98	2.1	96	82	8	249	42	3	9	44	1.52
29775--29848	3	24.7	3	78	5	78	41	0	0	58	0.98
29775--29843	24	2.8	25	89	4	106	43	0	0	56	0.99
29775--29848	30	2.5	30	88	4	105	41	0	0	58	0.98
29855--29909	26	2.1	26	86	0	74	40	30	18	10	1.85
38689--39228	114	4.7	113	93	1	864	31	15	20	31	1.94
41384--41500	55	2.1	54	89	4	173	41	16	20	22	1.90
41867--41923	22	2.6	22	91	0	96	38	10	14	36	1.80
42598--43160	76	7.4	76	97	0	1038	21	20	22	35	1.96
43305--43369	3	21.7	3	75	6	60	43	0	0	56	0.99
43305--43364	21	2.8	22	87	5	88	45	0	0	55	0.99
43305--43369	27	2.4	27	87	5	87	43	0	0	56	0.99
43376--43430	26	2.1	26	89	0	83	40	32	18	9	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46865--46904	12	3.6	12	80	12	50	45	2	0	52	1.14
46891--47299	22	18.6	22	83	6	481	41	0	9	48	1.39
47323--47381	31	1.9	31	85	0	82	42	8	5	44	1.57
53042--53072	15	2.0	16	93	6	55	19	12	12	54	1.70
54870--54910	3	13.7	3	94	0	73	34	0	2	63	1.08
55680--55774	28	3.4	28	75	15	81	32	6	1	60	1.29
55680--55774	29	3.4	30	76	15	80	32	6	1	60	1.29
66786--66863	18	3.9	19	83	13	88	29	8	5	56	1.52
69847--70284	111	4.0	113	86	6	614	38	15	18	27	1.91
72322--72363	20	2.3	19	81	18	54	52	4	7	35	1.50

Tables:   1

The End!