genome.fa.s1082.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001082.1 Hibiscus syriacus cultivar Beakdansim tig00002141_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70169

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2909--2982	36	2.1	35	80	9	80	52	2	8	36	1.45
3648--3987	109	3.1	112	89	3	530	45	12	15	27	1.81
3860--4483	180	3.5	182	88	3	890	43	12	15	29	1.83
5123--5170	23	2.1	23	88	0	69	37	20	6	35	1.78
6104--6160	23	2.4	23	76	2	60	40	17	5	36	1.72
4574--6417	989	1.9	973	89	6	2715	39	13	12	34	1.82
6598--6636	15	2.5	15	88	12	53	41	0	0	58	0.98
6745--6790	14	3.5	14	82	17	71	43	4	0	52	1.21
6756--6802	11	3.9	11	82	17	58	40	2	0	57	1.11
6743--6803	25	2.4	26	94	5	115	44	3	0	52	1.17
8819--8868	23	2.2	23	85	3	75	36	0	0	64	0.94
10120--10500	118	3.2	118	82	4	394	34	8	21	35	1.84
9978--10500	236	2.3	224	78	6	523	34	8	21	35	1.83
21115--21164	21	2.4	21	75	0	55	24	18	24	34	1.96
21170--21237	21	3.2	21	91	0	118	23	23	23	29	1.99
21602--21638	18	2.0	19	89	5	58	48	2	2	45	1.30
25080--25129	23	2.2	24	85	7	68	64	8	10	18	1.48
25091--25146	23	2.4	23	85	5	69	62	10	10	16	1.54
25753--25809	30	1.9	29	82	10	71	15	15	1	66	1.33
26896--26933	9	4.0	10	80	13	53	71	0	13	15	1.16
28155--28268	58	1.9	60	87	3	160	39	7	15	36	1.77
28413--28459	21	2.1	23	88	7	71	25	40	0	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28649--28685	15	2.4	16	86	13	51	16	59	5	18	1.55
31893--31939	2	23.0	2	95	4	85	48	0	2	48	1.13
32219--32484	120	2.3	115	81	6	320	30	27	6	35	1.82
34460--34510	25	2.0	25	85	7	68	15	31	21	31	1.95
35760--35825	31	2.1	31	100	0	132	34	15	9	40	1.78
38513--38587	21	3.6	21	73	14	57	38	4	0	57	1.18
45396--45425	2	15.0	2	100	0	60	50	0	0	50	1.00
49003--49238	120	2.0	120	98	0	454	29	23	9	37	1.87
60346--60409	24	2.7	24	80	7	69	45	14	15	25	1.83
61047--61098	24	2.2	23	83	10	61	48	13	9	28	1.74
62842--62953	59	1.9	59	87	3	163	30	20	6	42	1.76
63081--63239	60	2.7	60	76	2	142	40	6	20	31	1.79
63409--63441	15	2.3	15	89	5	50	60	0	3	36	1.12

Tables:   1

The End!