Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001083.1 Hibiscus syriacus cultivar Beakdansim tig00002144_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79325

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2401--2554
63
2.5
64
76
10
165
25
19
20
35
1.96
3953--4018
34
1.9
34
87
0
96
53
15
1
30
1.51
10786--10823
20
1.9
20
100
0
76
36
10
28
23
1.88
10978--11051
36
2.1
36
85
10
98
47
2
0
50
1.15
14304--15130
416
2.0
414
94
0
1467
28
19
14
37
1.91
18299--18424
16
7.8
16
66
5
65
45
26
11
16
1.82
18300--18381
32
2.6
32
82
7
96
48
25
12
13
1.77
18626--18662
19
1.9
19
88
0
56
59
0
5
35
1.20
24382--24460
32
2.5
32
89
4
115
34
16
10
39
1.82
25806--26056
45
6.2
45
67
24
157
36
11
23
27
1.90
25851--25983
34
3.6
34
69
20
104
36
11
23
28
1.89
25796--26030
79
3.0
77
89
5
352
37
11
23
27
1.89
33873--33943
20
3.5
20
73
16
58
26
16
28
28
1.97
34350--34592
79
3.1
79
91
0
378
37
11
23
28
1.89
34439--34582
45
3.5
44
73
20
155
33
11
25
29
1.90
43166--43212
24
2.0
24
83
8
60
72
4
2
21
1.12
43652--43778
9
14.1
9
66
23
54
38
2
0
58
1.17
43647--43784
16
8.1
16
66
21
59
39
2
0
57
1.19
43708--43751
22
2.1
22
83
8
56
45
4
0
50
1.22
43652--43774
35
3.6
33
85
10
142
39
2
0
57
1.17
43654--43780
13
9.5
13
72
17
57
38
2
0
58
1.17
47207--47254
11
3.9
12
86
10
62
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58140--58184
20
2.2
20
92
0
72
33
17
17
31
1.94
58698--59001
151
2.0
151
98
0
581
42
13
15
27
1.85
59083--59122
21
1.9
22
90
10
66
12
10
40
37
1.77
59235--59308
20
3.7
20
80
3
85
29
24
25
20
1.99
59329--59469
21
6.7
21
88
2
203
21
19
36
21
1.95
59549--59606
30
2.0
29
90
10
91
44
17
5
32
1.70
59549--59608
29
2.0
30
93
6
104
43
16
6
33
1.74
60847--60894
19
2.5
20
82
3
62
29
12
6
52
1.63
62032--62071
21
1.9
22
90
10
66
12
10
40
37
1.77
62175--62281
21
5.1
21
87
4
146
26
28
24
21
1.99
62334--62376
22
1.9
23
90
4
70
20
20
32
25
1.97
62320--62439
21
5.8
20
84
10
143
22
19
35
22
1.96
62519--62576
30
2.0
29
90
10
91
44
17
5
32
1.70
62519--62578
29
2.0
30
93
6
104
43
16
6
33
1.74
64790--64820
12
2.6
12
94
0
53
29
19
0
51
1.47
64873--64947
19
3.9
19
82
3
89
29
17
9
44
1.80
71164--71224
23
2.7
23
86
0
86
27
26
26
19
1.99
72168--72243
2
38.0
2
100
0
152
50
0
0
50
1.00

Tables:   1

The End!