Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001084.1 Hibiscus syriacus cultivar Beakdansim tig00002145_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72197

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
490--517
3
9.3
3
100
0
56
64
0
35
0
0.94
3902--3994
20
4.8
20
81
4
100
52
20
12
13
1.73
3916--3992
39
2.0
39
84
5
102
54
22
11
11
1.68
4027--4066
20
2.0
20
85
0
53
15
12
22
50
1.77
4399--4449
22
2.3
22
100
0
102
19
13
45
21
1.85
4604--4674
20
3.5
20
84
5
90
16
15
28
39
1.89
14184--14222
18
2.2
18
95
4
71
64
2
0
33
1.08
14753--14795
20
2.2
20
100
0
86
39
25
9
25
1.85
15115--15146
14
2.3
14
100
0
64
37
0
0
62
0.95
15139--15187
2
25.0
2
95
4
91
51
0
0
48
1.00
15803--16170
131
2.8
130
86
2
470
32
7
16
44
1.75
18667--18735
3
23.3
3
71
14
54
28
1
1
68
1.07
18667--18704
20
1.9
20
94
0
67
31
2
2
63
1.22
18664--18740
33
2.3
33
86
6
102
28
1
1
68
1.05
18702--18736
10
3.7
9
88
11
52
25
0
0
74
0.82
24870--24909
21
1.9
21
84
0
53
25
40
25
10
1.86
29404--29536
10
12.3
11
74
20
97
41
3
1
54
1.25
29470--29695
2
115.0
2
76
8
160
42
5
4
46
1.47
29692--29738
16
3.0
16
76
11
53
12
0
38
48
1.41
29695--29721
2
13.5
2
100
0
54
0
0
48
51
1.00
31712--31762
24
2.0
27
85
11
72
50
0
3
45
1.20
31728--31973
36
6.7
36
74
20
142
47
2
8
42
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31728--32105
37
9.8
37
72
18
201
46
1
8
43
1.44
31904--32005
11
8.4
11
69
25
55
44
1
7
46
1.44
31805--32002
76
2.6
76
86
7
251
47
2
8
41
1.44
31940--32048
48
2.2
49
88
6
157
45
0
6
46
1.34
31940--32012
13
5.7
13
73
12
62
43
1
8
46
1.42
31882--32113
76
3.1
75
77
14
169
46
1
7
44
1.39
31915--32074
88
1.8
88
87
11
240
46
0
7
45
1.36
33193--33530
5
65.6
5
66
21
73
73
2
7
15
1.19
33150--33349
18
11.3
17
72
19
126
75
2
8
15
1.13
33229--33349
4
30.2
4
68
22
60
77
1
4
15
1.02
33232--33357
31
3.8
33
73
15
100
77
1
5
15
1.02
33153--33357
13
16.2
13
68
19
87
75
1
8
14
1.12
33241--33400
9
19.8
8
68
24
54
75
3
5
15
1.11
33421--33478
24
2.5
23
83
5
64
77
3
5
13
1.07
33488--33530
23
1.9
23
86
13
63
74
0
9
16
1.06
33549--33588
12
2.9
15
75
21
50
62
0
10
27
1.27
33630--33662
2
16.5
2
100
0
66
51
0
0
48
1.00
35062--36568
85
17.8
85
84
2
1722
25
17
21
34
1.96
37555--37753
94
2.1
96
84
2
267
33
16
15
35
1.89
41675--41802
14
9.2
13
70
23
50
73
2
7
17
1.16
41678--41802
38
3.3
38
80
13
118
73
2
7
16
1.16
41740--41802
33
1.9
33
86
0
90
74
3
6
15
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41815--41853
6
6.5
6
90
0
60
69
20
0
10
1.17
41710--41825
29
3.9
30
76
14
84
74
3
6
15
1.17
41815--42074
12
21.7
12
95
0
151
58
25
8
8
1.55
41819--42085
6
45.0
6
95
1
135
58
25
8
7
1.53
41964--42074
6
18.5
6
97
0
186
63
18
2
15
1.41
42162--42233
23
3.1
22
82
9
74
79
2
9
8
1.04
42194--42254
28
2.2
27
82
8
70
81
1
6
9
0.92
42225--42293
20
3.2
21
71
21
54
72
0
1
26
0.93
42231--42291
17
3.8
16
81
12
63
70
0
1
27
0.97
42334--42396
2
32.5
2
84
12
78
53
0
3
42
1.16
43937--43979
12
3.7
12
81
3
52
13
9
0
76
1.01
44000--44242
5
46.6
5
68
21
103
17
2
4
74
1.10
43990--44081
42
2.2
42
82
9
107
17
3
5
73
1.15
44009--44242
9
27.5
8
68
15
64
17
2
4
74
1.11
44004--44077
16
4.7
15
75
18
53
16
2
4
77
1.04
44105--44151
24
1.9
25
82
4
60
17
4
4
74
1.14
44180--44261
25
3.3
24
73
13
69
15
3
4
75
1.11
46769--46844
24
2.9
27
77
14
72
75
1
5
18
1.07
46782--46849
13
5.4
13
69
13
52
77
2
2
16
1.00
46784--46836
26
2.2
24
83
10
63
79
0
3
16
0.88
47192--47274
24
3.6
23
75
19
84
65
1
3
30
1.17
47204--47278
23
3.4
21
69
10
60
64
0
4
32
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47371--47449
30
2.6
30
76
9
81
72
2
6
18
1.18
47490--47534
12
3.7
12
81
3
54
66
0
4
28
1.11
47491--47539
24
2.0
24
92
0
80
67
0
4
28
1.09
48106--48197
37
2.5
37
90
0
139
30
14
14
41
1.85
48417--49898
106
14.0
106
90
1
2172
23
18
24
34
1.96
50808--50884
22
3.5
22
94
0
136
24
14
25
35
1.93
51490--51564
7
10.7
7
76
9
55
1
12
6
80
0.97
51492--51566
20
3.8
20
73
16
59
1
12
6
80
0.97
51513--51570
16
3.7
15
80
15
57
0
13
5
81
0.86
51503--51569
35
1.9
34
82
14
84
0
13
5
80
0.88
56183--56210
12
2.3
12
100
0
56
85
0
14
0
0.59
56817--56870
24
2.1
27
86
10
78
72
1
0
25
0.95
56761--56850
16
5.2
16
70
18
56
74
2
5
17
1.11
65238--65369
30
4.4
30
96
0
239
32
23
18
25
1.97
65238--65394
60
2.6
60
90
2
226
33
24
18
23
1.97
65618--65658
4
10.8
4
89
10
68
48
24
0
26
1.51
69981--70078
30
3.2
30
91
1
142
33
24
18
23
1.97
70039--70114
31
2.4
32
84
4
93
32
21
15
30
1.94
71318--71357
20
2.0
20
95
0
71
27
20
27
25
1.99

Tables:   1

The End!