Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001085.1 Hibiscus syriacus cultivar Beakdansim tig00002146_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62882

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3003--3071
30
2.3
30
90
5
104
40
4
21
33
1.73
3290--3358
23
3.0
23
74
4
68
24
26
21
27
1.99
8908--8976
23
3.0
22
87
8
93
20
24
26
28
1.99
11666--11724
29
2.0
29
93
0
100
50
15
10
23
1.74
15681--15737
22
2.6
21
73
15
53
40
1
5
52
1.34
16731--16783
26
2.0
26
100
0
106
50
11
7
30
1.65
20006--20035
2
15.5
2
93
6
53
46
0
0
53
1.00
20226--20292
35
1.9
35
87
0
98
26
20
19
32
1.97
20273--20347
35
2.1
35
87
4
107
21
14
22
41
1.89
28564--28593
2
15.0
2
100
0
60
50
0
0
50
1.00
29060--29088
14
2.1
14
100
0
58
37
13
20
27
1.91
30678--30707
3
10.0
3
100
0
60
33
0
0
66
0.92
34084--34333
131
1.9
131
84
3
333
33
11
16
38
1.84
35243--35270
14
2.0
14
100
0
56
64
7
28
0
1.20
42511--42554
6
7.3
6
100
0
88
15
0
50
34
1.45
47217--47329
42
2.7
41
88
2
154
16
16
17
48
1.81
47524--47567
22
2.0
23
86
4
63
45
0
0
54
0.99
47533--47643
54
2.1
52
81
9
127
51
0
0
46
1.13
47620--47683
28
2.2
28
81
8
67
54
0
1
43
1.09
47618--47693
19
3.9
19
72
14
57
55
0
1
43
1.08
47688--47732
23
2.0
23
86
0
63
53
2
2
42
1.25
48033--48073
14
2.9
14
88
0
64
41
14
9
34
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48075--48120
15
3.1
15
78
6
58
30
17
8
43
1.79
48099--48141
21
2.0
21
86
0
59
27
20
9
41
1.83
51529--51559
16
1.9
16
100
0
62
58
22
12
6
1.58
51627--51701
10
7.7
10
72
21
70
57
20
12
10
1.64
51631--51695
16
4.1
16
91
0
112
56
21
12
9
1.63
52447--52502
14
4.3
14
76
17
66
53
23
12
10
1.69
52427--52501
24
3.1
24
86
3
98
56
20
10
13
1.66
55155--55207
3
18.0
3
96
3
99
33
0
0
66
0.92
56640--56695
2
28.0
2
92
7
96
50
1
0
48
1.11

Tables:   1

The End!