Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001086.1 Hibiscus syriacus cultivar Beakdansim tig00002147_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84202

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--140
58
2.4
59
86
3
194
29
30
15
25
1.95
143--241
42
2.4
41
88
6
139
20
22
25
32
1.98
231--275
19
2.3
20
92
3
74
22
31
24
22
1.99
2014--2074
24
2.5
24
81
5
68
31
4
6
57
1.46
5117--5206
26
3.5
26
92
6
157
45
13
7
33
1.72
11035--11083
15
3.2
16
77
8
57
79
2
6
12
0.99
14466--14662
99
2.0
99
84
4
254
31
16
15
36
1.90
20094--20131
19
2.0
19
100
0
76
10
21
31
36
1.87
25668--25693
4
6.5
4
100
0
52
76
0
23
0
0.78
40819--40863
2
22.5
2
100
0
90
48
0
0
51
1.00
41519--41559
23
1.9
21
85
14
57
29
7
24
39
1.82
43295--43381
23
3.6
23
74
21
63
57
3
1
37
1.23
43289--43396
56
1.9
55
80
15
125
57
2
1
37
1.24
44127--44173
21
2.2
21
92
0
76
4
25
17
53
1.62
44394--44465
36
2.0
36
100
0
144
22
19
38
19
1.93
44672--44718
23
2.1
22
88
7
69
10
21
29
38
1.87
45306--45417
46
2.5
46
91
2
174
21
22
16
40
1.91
45978--46021
22
2.0
22
95
0
79
38
13
15
31
1.87
51089--51176
45
1.9
47
83
4
117
29
20
12
37
1.89
51771--51803
3
11.0
3
87
12
50
63
0
0
36
0.95
52672--52698
14
1.9
14
100
0
54
22
22
25
29
1.99
52903--52949
23
2.1
22
92
7
78
8
19
31
40
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52971--53002
14
2.1
16
88
11
50
53
3
0
43
1.16
57559--57634
23
3.3
23
96
0
134
25
6
21
47
1.74
62155--62203
19
2.5
20
83
6
64
71
2
6
20
1.18
62235--62276
17
2.4
18
88
4
59
69
0
2
28
1.01
62930--62957
12
2.3
12
100
0
56
53
7
0
39
1.28
62964--63011
25
2.0
24
83
4
60
62
12
2
22
1.40
62901--63069
76
2.3
75
86
5
222
57
12
0
28
1.39
64744--64791
5
9.6
5
82
8
62
75
0
4
20
0.97
64744--64791
20
2.4
20
89
6
71
75
0
4
20
0.97
70054--70133
39
2.1
39
100
0
160
22
23
15
38
1.92
70124--70152
14
2.1
14
100
0
58
20
20
20
37
1.94
71189--71299
19
5.9
19
69
16
54
57
14
0
27
1.43
71146--71307
76
2.2
74
86
6
224
57
12
0
29
1.40
78715--78757
18
2.5
17
85
7
61
25
4
2
67
1.22
79002--79067
14
4.8
13
71
15
53
15
4
1
78
0.98
80212--80249
20
1.9
20
89
10
60
7
26
0
65
1.19
83746--84182
183
2.4
182
96
0
795
28
20
20
30
1.97

Tables:   1

The End!