Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001087.1 Hibiscus syriacus cultivar Beakdansim tig00002148_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 149113
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Found at i:5431 original size:18 final size:17
Alignment explanation
Indices: 5377--5425 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
5367 TTAGACCCTT
* *
5377 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
5395 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
5413 AGTGCATTCGATG
1 AGTGCA-TCGATG
5426 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:5483 original size:64 final size:65
Alignment explanation
Indices: 5397--5541 Score: 188
Period size: 64 Copynumber: 2.2 Consensus size: 65
5387 TGCACTAAGA
*
5397 GTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAAT-AGCCA-GAGTACATCGATGCATGG-C
1 GTGCATCGATGCATCAAATGCATTCGATG-TTCAAAATAAGCCATG-GTACATCGATGCATGGAC
5459 TG
64 TG
** ** * *
5461 GTGCATCGATGCATCAAATGCATTCGATGTTCAATTTAATTCATGGTGCATCGATGCATGGATTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTCAAAATAAGCCATGGTACATCGATGCATGGACTG
5526 GTGCATCGATGCATCA
1 GTGCATCGATGCATCA
5542 CTTTGATAAA
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
63 6 0.08
64 46 0.65
65 19 0.27
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (65 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTCAAAATAAGCCATGGTACATCGATGCATGGACTG
Found at i:6473 original size:16 final size:16
Alignment explanation
Indices: 6452--6488 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
6442 ACCTAGACTG
6452 TCTACCGATATTCTCA
1 TCTACCGATATTCTCA
6468 TCTACCGATATTCTCA
1 TCTACCGATATTCTCA
6484 TCTAC
1 TCTAC
6489 AAAAGATTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.32, G:0.05, T:0.38
Consensus pattern (16 bp):
TCTACCGATATTCTCA
Found at i:10666 original size:45 final size:45
Alignment explanation
Indices: 10602--10687 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
10592 TATTGCTTAT
10602 CCATCCTATTCTTACATGATTGATGAGAATGAAGATTAATTTTAC
1 CCATCCTATTCTTACATGATTGATGAGAATGAAGATTAATTTTAC
* *
10647 CCATCCTATTCTTACATGATTGATTAGAATGAATATTAATT
1 CCATCCTATTCTTACATGATTGATGAGAATGAAGATTAATT
10688 AGAATCATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.40
Consensus pattern (45 bp):
CCATCCTATTCTTACATGATTGATGAGAATGAAGATTAATTTTAC
Found at i:13580 original size:7 final size:7
Alignment explanation
Indices: 13568--13619 Score: 63
Period size: 7 Copynumber: 7.3 Consensus size: 7
13558 ATTATTGTTA
13568 TTTTTAT
1 TTTTTAT
13575 TTTTTAAT
1 TTTTT-AT
13583 TTTTTAT
1 TTTTTAT
13590 TTTTTAAT
1 TTTTT-AT
13598 TTTTT-T
1 TTTTTAT
13604 TTTGTTA-
1 TTT-TTAT
13611 TTTTTAT
1 TTTTTAT
13618 TT
1 TT
13620 GACGAAAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
6 7 0.17
7 19 0.47
8 14 0.35
ACGTcount: A:0.15, C:0.00, G:0.02, T:0.83
Consensus pattern (7 bp):
TTTTTAT
Found at i:13588 original size:15 final size:15
Alignment explanation
Indices: 13568--13619 Score: 74
Period size: 15 Copynumber: 3.6 Consensus size: 15
13558 ATTATTGTTA
13568 TTTTTATTTTTTAAT
1 TTTTTATTTTTTAAT
13583 TTTTTATTTTTTAAT
1 TTTTTATTTTTTAAT
13598 TTTTT-TTTTGTT-A-
1 TTTTTATTTT-TTAAT
13611 TTTTTATTT
1 TTTTTATTT
13620 GACGAAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.14
14 8 0.23
15 22 0.63
ACGTcount: A:0.15, C:0.00, G:0.02, T:0.83
Consensus pattern (15 bp):
TTTTTATTTTTTAAT
Found at i:13600 original size:22 final size:22
Alignment explanation
Indices: 13562--13615 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
13552 TATTTCATTA
*
13562 TTGTTA-TTTTTATTTTTTAATT
1 TTGTTATTTTTTAATTTTT-ATT
*
13584 TT-TTATTTTTTAATTTTTTTT
1 TTGTTATTTTTTAATTTTTATT
13605 TTGTTATTTTT
1 TTGTTATTTTT
13616 ATTTGACGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 7 0.25
22 21 0.75
ACGTcount: A:0.15, C:0.00, G:0.04, T:0.81
Consensus pattern (22 bp):
TTGTTATTTTTTAATTTTTATT
Found at i:15248 original size:155 final size:155
Alignment explanation
Indices: 14959--15260 Score: 426
Period size: 155 Copynumber: 1.9 Consensus size: 155
14949 GGAACATCTA
* * ** *
14959 GGACAGTTGGAAGGATGAGAGAAGAAAGAAGTTCTACCAACGCTATGGCGATATTGCATATCTAC
1 GGACAGTTGGAAGGATGAAAGAAGAAAAAAGTTCTACCAACGCTATAACGACATTGCATATCTAC
* *
15024 TATATGTTAAGGTGCACAAACCTTTGATCCAGACACTAGTCTAGTTCTGGAATCCGGGGATCAAT
66 TATATGTTAAGGTGCACAAACCTTTGATCCAGACACTAGTCTAGTTCTGGAATCAGGGGATCAAC
15089 TGTTTCACCTTCAACAACGAAGTTG
131 TGTTTCACCTTCAACAACGAAGTTG
15114 GGACAGTTGGAAGGATGAAAGAAGAAAAAAGTTCTACCAACGCTATAACGACATTGCATATCTAC
1 GGACAGTTGGAAGGATGAAAGAAGAAAAAAGTTCTACCAACGCTATAACGACATTGCATATCTAC
* * ** ** ** * * *
15179 TCTATGTTAAGGTGGATGAACCTTTGATCTGGGTACTAGTCTAGTTTTGGAATTCAGGGTA-CAG
66 TATATGTTAAGGTGCACAAACCTTTGATCCAGACACTAGTCTAGTTCTGGAA-TCAGGGGATCAA
15243 CTGTTTCACCTTCAACAA
130 CTGTTTCACCTTCAACAA
15261 AGAAAATATG
Statistics
Matches: 128, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
155 122 0.95
156 6 0.05
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (155 bp):
GGACAGTTGGAAGGATGAAAGAAGAAAAAAGTTCTACCAACGCTATAACGACATTGCATATCTAC
TATATGTTAAGGTGCACAAACCTTTGATCCAGACACTAGTCTAGTTCTGGAATCAGGGGATCAAC
TGTTTCACCTTCAACAACGAAGTTG
Found at i:30103 original size:6 final size:6
Alignment explanation
Indices: 30092--30125 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
30082 CCTTTCAATT
*
30092 AAAATG AAAATG AAAATG AAAATA AAAAT- AAAAT
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAAT
30126 TATTTTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.18
Consensus pattern (6 bp):
AAAATG
Found at i:30170 original size:25 final size:23
Alignment explanation
Indices: 30118--30179 Score: 81
Period size: 23 Copynumber: 2.6 Consensus size: 23
30108 TGAAAATAAA
*
30118 AATAAAATTATTTTAATTAAGTT
1 AATAAAAATATTTTAATTAAGTT
30141 AATAAAAATATATTTAA-TAAGTT
1 AATAAAAATAT-TTTAATTAAGTT
30164 AATATAAAAATATTTT
1 -A-ATAAAAATATTTT
30180 TATGTTAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
23 16 0.46
24 9 0.26
25 10 0.29
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (23 bp):
AATAAAAATATTTTAATTAAGTT
Found at i:31038 original size:7 final size:7
Alignment explanation
Indices: 31015--31073 Score: 73
Period size: 7 Copynumber: 8.1 Consensus size: 7
31005 CCCTCTTCCC
31015 TTCCCCAT
1 TTCCCC-T
*
31023 TTTCCCT
1 TTCCCCT
31030 TTCCCCT
1 TTCCCCT
31037 TTCCCCT
1 TTCCCCT
31044 TTCCCCT
1 TTCCCCT
*
31051 TTCCCCA
1 TTCCCCT
*
31058 TTCCCAT
1 TTCCCCT
31065 TTCCTCCT
1 TTCC-CCT
31073 T
1 T
31074 CTACCATTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
7 36 0.82
8 8 0.18
ACGTcount: A:0.05, C:0.51, G:0.00, T:0.44
Consensus pattern (7 bp):
TTCCCCT
Found at i:43228 original size:34 final size:30
Alignment explanation
Indices: 43197--43257 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
43187 ACAATTTAAG
43197 ACAAAATGGTTTTTGGACTTGAATTAAATTT-
1 ACAAAAT-GTTTTTGGACTT-AATTAAATTTA
* *
43228 ACAATATGTTTTTGGACTTAATTGAATTTA
1 ACAAAATGTTTTTGGACTTAATTAAATTTA
43258 TTCAAAGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 9 0.33
30 12 0.44
31 6 0.22
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.44
Consensus pattern (30 bp):
ACAAAATGTTTTTGGACTTAATTAAATTTA
Found at i:43376 original size:21 final size:21
Alignment explanation
Indices: 43347--43388 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
43337 TTCAAGATTG
* *
43347 CCCAGGGGGTACAGATTCCCC
1 CCCAAGGGGTACAGATACCCC
43368 CCCAAGGGGTACAGATACCCC
1 CCCAAGGGGTACAGATACCCC
43389 GGGTACAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.38, G:0.26, T:0.12
Consensus pattern (21 bp):
CCCAAGGGGTACAGATACCCC
Found at i:43394 original size:15 final size:15
Alignment explanation
Indices: 43374--43403 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
43364 CCCCCCCAAG
43374 GGGTACAGATACCCC
1 GGGTACAGATACCCC
43389 GGGTACAGATACCCC
1 GGGTACAGATACCCC
43404 CCCCAGGGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.27, T:0.13
Consensus pattern (15 bp):
GGGTACAGATACCCC
Found at i:43414 original size:37 final size:36
Alignment explanation
Indices: 43353--43425 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 36
43343 ATTGCCCAGG
*
43353 GGGTACAGATTCCCCCCCAAGGGGTACAGATACCCC
1 GGGTACAGATCCCCCCCCAAGGGGTACAGATACCCC
* * *
43389 GGGTACAGATACCCCCCCCAGGGGGTACCGATTCCCC
1 GGGTACAGAT-CCCCCCCCAAGGGGTACAGATACCCC
43426 CTGTCTAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 10 0.31
37 22 0.69
ACGTcount: A:0.22, C:0.38, G:0.26, T:0.14
Consensus pattern (36 bp):
GGGTACAGATCCCCCCCCAAGGGGTACAGATACCCC
Found at i:43536 original size:21 final size:21
Alignment explanation
Indices: 43510--43551 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
43500 ATTTGAATAT
*
43510 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
43531 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
43552 CCCATTCTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:43614 original size:21 final size:21
Alignment explanation
Indices: 43580--43619 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
43570 TTTGAGTAGA
*
43580 AAAATCATTCCCAAACGGCTCC
1 AAAATCA-TCCCCAACGGCTCC
43602 AAAAT-ATCCCCAACGGCT
1 AAAATCATCCCCAACGGCT
43620 AGATACGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 1 0.06
22 5 0.29
ACGTcount: A:0.38, C:0.35, G:0.10, T:0.17
Consensus pattern (21 bp):
AAAATCATCCCCAACGGCTCC
Found at i:46721 original size:34 final size:30
Alignment explanation
Indices: 46691--46751 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
46681 ACAATTTAAG
46691 ACAAAATGGTTTTTGGACTTGAATTAAATTT-
1 ACAAAAT-GTTTTTGGACTT-AATTAAATTTA
* *
46722 ACAATATGTTTTTGGACTTAATTGAATTTA
1 ACAAAATGTTTTTGGACTTAATTAAATTTA
46752 TTCAAAGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 9 0.33
30 12 0.44
31 6 0.22
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.44
Consensus pattern (30 bp):
ACAAAATGTTTTTGGACTTAATTAAATTTA
Found at i:46866 original size:21 final size:21
Alignment explanation
Indices: 46841--46921 Score: 84
Period size: 21 Copynumber: 4.1 Consensus size: 21
46831 TTCAAGATTG
46841 CCCAGGGGGTACAGATTCCCC
1 CCCAGGGGGTACAGATTCCCC
*
46862 CCCAGGGGGTACAGA-T--AC
1 CCCAGGGGGTACAGATTCCCC
*
46880 CCC---GGGTACAGATACCCCC
1 CCCAGGGGGTACAGAT-TCCCC
*
46899 CCCAGGGGGTACCGATTCCCC
1 CCCAGGGGGTACAGATTCCCC
46920 CC
1 CC
46922 TGTCTAAAGC
Statistics
Matches: 48, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
15 9 0.19
18 4 0.08
19 4 0.08
20 1 0.02
21 21 0.44
22 9 0.19
ACGTcount: A:0.20, C:0.41, G:0.27, T:0.12
Consensus pattern (21 bp):
CCCAGGGGGTACAGATTCCCC
Found at i:46887 original size:36 final size:37
Alignment explanation
Indices: 46847--46919 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
46837 ATTGCCCAGG
*
46847 GGGTACAGAT-TCCCCCCCAGGGGGTACAGATACCCC
1 GGGTACAGATACCCCCCCCAGGGGGTACAGATACCCC
* *
46883 GGGTACAGATACCCCCCCCAGGGGGTACCGATTCCCC
1 GGGTACAGATACCCCCCCCAGGGGGTACAGATACCCC
46920 CCTGTCTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
36 10 0.30
37 23 0.70
ACGTcount: A:0.21, C:0.38, G:0.27, T:0.14
Consensus pattern (37 bp):
GGGTACAGATACCCCCCCCAGGGGGTACAGATACCCC
Found at i:46888 original size:15 final size:15
Alignment explanation
Indices: 46868--46897 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
46858 CCCCCCCAGG
46868 GGGTACAGATACCCC
1 GGGTACAGATACCCC
46883 GGGTACAGATACCCC
1 GGGTACAGATACCCC
46898 CCCCAGGGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.27, T:0.13
Consensus pattern (15 bp):
GGGTACAGATACCCC
Found at i:46987 original size:20 final size:21
Alignment explanation
Indices: 46947--46990 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
46937 AACAGAATGT
46947 CCAGGGGGTACCGATTCCCCC
1 CCAGGGGGTACCGATTCCCCC
46968 CCAGGGGGTACCGATTCCCCC
1 CCAGGGGGTACCGATTCCCCC
46989 CC
1 CC
46991 TGTTCAACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.14, C:0.45, G:0.27, T:0.14
Consensus pattern (21 bp):
CCAGGGGGTACCGATTCCCCC
Found at i:47052 original size:21 final size:21
Alignment explanation
Indices: 47026--47067 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
47016 ATTTGAATAT
*
47026 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
47047 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
47068 CCCATTCTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:47130 original size:21 final size:21
Alignment explanation
Indices: 47096--47135 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
47086 TTTGAGTAGA
*
47096 AAAATCATTCCCAAACGGCTCC
1 AAAATCA-TCCCCAACGGCTCC
47118 AAAAT-ATCCCCAACGGCT
1 AAAATCATCCCCAACGGCT
47136 AGATACGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 1 0.06
22 5 0.29
ACGTcount: A:0.38, C:0.35, G:0.10, T:0.17
Consensus pattern (21 bp):
AAAATCATCCCCAACGGCTCC
Found at i:49736 original size:21 final size:21
Alignment explanation
Indices: 49712--49764 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
49702 ATTCTGACTA
*
49712 TCGCATTGTGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
49733 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
49754 TCGCAATGCGA
1 TCGCATTGCGA
49765 ATACGTAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:49779 original size:20 final size:20
Alignment explanation
Indices: 49754--49900 Score: 177
Period size: 20 Copynumber: 7.2 Consensus size: 20
49744 TTTTCCTAAT
49754 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
49774 TCGCAACGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
49794 TCGTAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
* * *
49814 TCGTAATGCGAATTAGGAAAA
1 TCGCAATGCGAA-TACGTAAA
* * *
49835 TCGCAACGCGAATTAGGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
49856 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
49876 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
49896 TCGCA
1 TCGCA
49901 TTCGCGTTGC
Statistics
Matches: 112, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
20 77 0.69
21 35 0.31
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:49867 original size:62 final size:61
Alignment explanation
Indices: 49754--49900 Score: 208
Period size: 62 Copynumber: 2.4 Consensus size: 61
49744 TTTTCCTAAT
* * *
49754 TCGCAATGCGAA-TACGTAAATCGCAACGCGATTACGTAAATCGTAATGCGATTACGTAAA
1 TCGCAATGCGAATTACGAAAATCGCAACGCGATTACGAAAATCGCAATGCGATTACGTAAA
* * *
49814 TCGTAATGCGAATTAGGAAAATCGCAACGCGAATTAGGAAAATCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATTACGAAAATCGCAACGCG-ATTACGAAAATCGCAATGCGATTACGTAAA
*
49876 TCGCAATGCGAA-TACGTAAATCGCA
1 TCGCAATGCGAATTACGAAAATCGCA
49901 TTCGCGTTGC
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
60 11 0.14
61 27 0.36
62 38 0.50
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (61 bp):
TCGCAATGCGAATTACGAAAATCGCAACGCGATTACGAAAATCGCAATGCGATTACGTAAA
Found at i:49929 original size:19 final size:19
Alignment explanation
Indices: 49901--50051 Score: 107
Period size: 19 Copynumber: 8.7 Consensus size: 19
49891 GTAAATCGCA
*
49901 TTCGCGTTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
* *
49920 TTCGCTTTGCGA--TTC-C
1 TTCGCATTGCGATTTTCAT
*
49936 CTCG--TTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
49953 TTCGCATTGCGA--TTC-T
1 TTCGCATTGCGATTTTCAT
*
49969 CTCG--TTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
*
49986 TTTGCATTGCGA--TTC-T
1 TTCGCATTGCGATTTTCAT
*
50002 CTCG--TTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
**
50019 TTCGCATTGCGATAGTCAT
1 TTCGCATTGCGATTTTCAT
50038 TTCCGCATTGCGAT
1 TT-CGCATTGCGAT
50052 AGACATTAAG
Statistics
Matches: 103, Mismatches: 13, Indels: 31
0.70 0.09 0.21
Matches are distributed among these distances:
14 18 0.17
16 19 0.18
17 19 0.18
19 36 0.35
20 11 0.11
ACGTcount: A:0.13, C:0.24, G:0.19, T:0.44
Consensus pattern (19 bp):
TTCGCATTGCGATTTTCAT
Found at i:49947 original size:33 final size:33
Alignment explanation
Indices: 49905--50031 Score: 227
Period size: 33 Copynumber: 3.8 Consensus size: 33
49895 ATCGCATTCG
* *
49905 CGTTGCGATTTTCATTTCGCTTTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
49938 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
*
49971 CGTTGCGATTTTCATTTTGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
50004 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
50032 AGTCATTTCC
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 90 1.00
ACGTcount: A:0.12, C:0.24, G:0.19, T:0.46
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
Found at i:49978 original size:14 final size:14
Alignment explanation
Indices: 49926--50013 Score: 50
Period size: 14 Copynumber: 5.6 Consensus size: 14
49916 TCATTTCGCT
*
49926 TTGCGATTCCCTCG
1 TTGCGATTCTCTCG
*
49940 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
49957 CATTGCGATTCTCTCG
1 --TTGCGATTCTCTCG
* *
49973 TTGCGATTTTCATTTTGCA
1 TTGCGA--TTC--TCT-CG
49992 TTGCGATTCTCTCG
1 TTGCGATTCTCTCG
50006 TTGCGATT
1 TTGCGATT
50014 TTCATTTCGC
Statistics
Matches: 57, Mismatches: 7, Indels: 20
0.68 0.08 0.24
Matches are distributed among these distances:
14 21 0.37
15 2 0.04
16 10 0.18
17 9 0.16
18 2 0.04
19 13 0.23
ACGTcount: A:0.11, C:0.24, G:0.19, T:0.45
Consensus pattern (14 bp):
TTGCGATTCTCTCG
Found at i:50046 original size:20 final size:19
Alignment explanation
Indices: 50015--50058 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
50005 GTTGCGATTT
50015 TCATTTCGCATTGCGATAG
1 TCATTTCGCATTGCGATAG
50034 TCATTTCCGCATTGCGATAG
1 TCATTT-CGCATTGCGATAG
*
50054 ACATT
1 TCATT
50059 AAGATGATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (19 bp):
TCATTTCGCATTGCGATAG
Found at i:50097 original size:20 final size:20
Alignment explanation
Indices: 50025--50097 Score: 60
Period size: 20 Copynumber: 3.6 Consensus size: 20
50015 TCATTTCGCA
**
50025 TTGCGATAGTCATTTCCGCA
1 TTGCGATAGTCATTTCCGTG
* **
50045 TTGCGATAGACA-TTAAGATG
1 TTGCGATAGTCATTTCCG-TG
50065 ATTGCGA-ACGTCATTTCCGTG
1 -TTGCGATA-GTCATTTCCGTG
50086 TTGCGATAGTCA
1 TTGCGATAGTCA
50098 AATGAATGCC
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 3 0.08
20 22 0.55
21 12 0.30
22 3 0.08
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (20 bp):
TTGCGATAGTCATTTCCGTG
Found at i:52607 original size:24 final size:24
Alignment explanation
Indices: 52580--52626 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
52570 CAAAATCTGA
52580 GTATTGAAC-AAGATCAAAGTTCGG
1 GTATTG-ACTAAGATCAAAGTTCGG
*
52604 GTATTGACTAAGATCAAATTTCG
1 GTATTGACTAAGATCAAAGTTCG
52627 AATGCTGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 2 0.10
24 19 0.90
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (24 bp):
GTATTGACTAAGATCAAAGTTCGG
Found at i:54490 original size:84 final size:84
Alignment explanation
Indices: 54343--54512 Score: 259
Period size: 84 Copynumber: 2.0 Consensus size: 84
54333 AAATCATAAA
* * * * *
54343 TGAAACTGCGATACGATACACTTTAGTGCAATCATAACCTGAGCACCAACGGTGTTGAGCATTGG
1 TGAAACTGCGATACAATACACTTCAGTGCAATCATAACCTGAGCACCAACGATGCTGAACATTGG
54408 TACACGAATGTACCAAAGC
66 TACACGAATGTACCAAAGC
* * *
54427 TGAAACTGTGATATAATGCACTTCAGTGCAATCATAACCTGAGCACCAACGATGCTGAACATTGG
1 TGAAACTGCGATACAATACACTTCAGTGCAATCATAACCTGAGCACCAACGATGCTGAACATTGG
*
54492 TACACGAATGTACTAAAGC
66 TACACGAATGTACCAAAGC
54511 TG
1 TG
54513 GACTAATAAC
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
84 77 1.00
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.24
Consensus pattern (84 bp):
TGAAACTGCGATACAATACACTTCAGTGCAATCATAACCTGAGCACCAACGATGCTGAACATTGG
TACACGAATGTACCAAAGC
Found at i:54655 original size:18 final size:19
Alignment explanation
Indices: 54632--54718 Score: 94
Period size: 18 Copynumber: 4.8 Consensus size: 19
54622 TTAATCTATG
54632 TCTGATAACTGTAAAA-CA
1 TCTGATAACTGTAAAATCA
54650 TCTGATAACTG-AAAATCA
1 TCTGATAACTGTAAAATCA
*
54668 TATGATAACTGT-AAAT-A
1 TCTGATAACTGTAAAATCA
* * *
54685 TCTAATAACT-AAAAATTA
1 TCTGATAACTGTAAAATCA
*
54703 TCTTATAACTGTAAAA
1 TCTGATAACTGTAAAA
54719 ATTTAAAATT
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
17 17 0.29
18 37 0.64
19 4 0.07
ACGTcount: A:0.47, C:0.13, G:0.08, T:0.32
Consensus pattern (19 bp):
TCTGATAACTGTAAAATCA
Found at i:54700 original size:35 final size:35
Alignment explanation
Indices: 54634--54717 Score: 105
Period size: 35 Copynumber: 2.4 Consensus size: 35
54624 AATCTATGTC
* *
54634 TGATAACTGTAAAACATCTGATAACTGAAAATCATA
1 TGATAACTGT-AAACATCTAATAACTAAAAATCATA
* * *
54670 TGATAACTGTAAATATCTAATAACTAAAAATTATC
1 TGATAACTGTAAACATCTAATAACTAAAAATCATA
*
54705 TTATAACTGTAAA
1 TGATAACTGTAAA
54718 AATTTAAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 32 0.76
36 10 0.24
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (35 bp):
TGATAACTGTAAACATCTAATAACTAAAAATCATA
Found at i:58751 original size:57 final size:57
Alignment explanation
Indices: 58661--58832 Score: 254
Period size: 57 Copynumber: 3.0 Consensus size: 57
58651 GTTGGAGGAA
* *
58661 GAATACTTGCATGTTCCTCGGCTTTGTGATGAGAGCCTTACTGTTCGTGACGGGGTT
1 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTT
* * *
58718 GAATACTTGTAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGATGGGGAT
1 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTT
* * * * *
58775 GATTACTTACAGGTTCCTTGGCTTTGTGCTCAGTGCCTTACTGTTCGTGACGGGGTT
1 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTT
58832 G
1 G
58833 TATGGTTATG
Statistics
Matches: 102, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 102 1.00
ACGTcount: A:0.15, C:0.19, G:0.30, T:0.36
Consensus pattern (57 bp):
GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTT
Found at i:63715 original size:57 final size:57
Alignment explanation
Indices: 63489--63717 Score: 325
Period size: 57 Copynumber: 4.0 Consensus size: 57
63479 GTTGGAGGAA
* * *
63489 GAATACTTGCATGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCTTGACGGGGAAT
1 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGG-TT
*
63547 -AATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGTCTTACTGTTCGTGACGGGGTT
1 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTT
*
63603 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGATGGGGTT
1 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTT
* * * * * ** *
63660 GATTACTTACAGGTCCCTTGGCTTTGTGCTCATTGCCTTACTGTTTGTGACGGGGTT
1 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTT
63717 G
1 G
63718 TATGGTTATG
Statistics
Matches: 155, Mismatches: 15, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
56 1 0.01
57 154 0.99
ACGTcount: A:0.14, C:0.20, G:0.29, T:0.36
Consensus pattern (57 bp):
GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTT
Found at i:68560 original size:57 final size:57
Alignment explanation
Indices: 68334--68562 Score: 307
Period size: 57 Copynumber: 4.0 Consensus size: 57
68324 GTTGGAGGAA
*
68334 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGAAT
1 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGG-TT
* * * *
68392 -AATACTTGTAGGTTCCTCGGCATTGTGCTGAAAGCCTTACTGTTCATGACGGGGTT
1 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTT
* * * *
68448 GAATACTTGCAAGTTCCTTGGCTTTGTGTTGAGAGCCTTACTGTTCGTGATGGGGTT
1 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTT
* * * * * *
68505 GATTACTTACAGGTTCCTTGGGTTTGTGCTCAGTGCCTTACTGTTCGTGACGGGGTT
1 GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTT
68562 G
1 G
68563 TATGGTTATG
Statistics
Matches: 149, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
56 1 0.01
57 148 0.99
ACGTcount: A:0.16, C:0.19, G:0.30, T:0.35
Consensus pattern (57 bp):
GAATACTTGCAGGTTCCTCGGCTTTGTGCTGAGAGCCTTACTGTTCGTGACGGGGTT
Found at i:71482 original size:31 final size:31
Alignment explanation
Indices: 71437--71539 Score: 127
Period size: 31 Copynumber: 3.4 Consensus size: 31
71427 AACCTAAAAG
* * *
71437 TATATTGTATTATTATTTTAATTTAAATATA
1 TATATTTTATTATTATCTTAAATTAAATATA
* *
71468 TATATTTTAATATTATCTTAAATTAAA-AAA
1 TATATTTTATTATTATCTTAAATTAAATATA
* * *
71498 TATAATTTATTATTATCTTAACTTAAATATT
1 TATATTTTATTATTATCTTAAATTAAATATA
71529 TATATTTTATT
1 TATATTTTATT
71540 TTGATAATAT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
30 26 0.43
31 34 0.57
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (31 bp):
TATATTTTATTATTATCTTAAATTAAATATA
Found at i:71512 original size:30 final size:31
Alignment explanation
Indices: 71444--71526 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
71434 AAGTATATTG
* * * *
71444 TATTATTATTTTAATTTAAATATATATATTT
1 TATTATTATCTTAAATTAAATAAATATAATT
*
71475 TAATATTATCTTAAATTAAA-AAATATAATT
1 TATTATTATCTTAAATTAAATAAATATAATT
*
71505 TATTATTATCTTAACTTAAATA
1 TATTATTATCTTAAATTAAATA
71527 TTTATATTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
30 26 0.59
31 18 0.41
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.52
Consensus pattern (31 bp):
TATTATTATCTTAAATTAAATAAATATAATT
Found at i:71623 original size:24 final size:24
Alignment explanation
Indices: 71596--71680 Score: 82
Period size: 25 Copynumber: 3.3 Consensus size: 24
71586 ATTTAAGATA
*
71596 AAAATAAAATATATTTTTATTGTT
1 AAAATAAAATATATTTTTATTGAT
*
71620 AAAATAAAAAAATATTTTTAAGTTAAGAT
1 AAAAT-AAAATATATTTTT-A-TT--GAT
71649 AAGAATAAAATATATGTTTTA-TGAT
1 AA-AATAAAATATAT-TTTTATTGAT
71674 AAAATAA
1 AAAATAA
71681 GAATTAATTA
Statistics
Matches: 51, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
24 10 0.20
25 17 0.33
26 1 0.02
27 3 0.06
29 13 0.25
30 7 0.14
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (24 bp):
AAAATAAAATATATTTTTATTGAT
Found at i:71711 original size:60 final size:58
Alignment explanation
Indices: 71588--71908 Score: 262
Period size: 60 Copynumber: 5.5 Consensus size: 58
71578 ATTTTTGTAT
*
71588 TTAAGATAAAAATAAAATATATTTTTATTGTTAAAATAA-AA--AAATAT-TT-TTAAG
1 TTAAGATAAAAATAAAATATATTTTTA-TGTTAAAATAAGAATTAAATATATTAATAAG
* * * *
71642 TTAAGATAAGAATAAAATATATGTTTTATGATAAAATAAGAATTAATTATATTAAATAAT
1 TTAAGATAAAAATAAAATATAT-TTTTATGTTAAAATAAGAATTAAATATATT-AATAAG
* * * ** *
71702 TTAAGATAAGAATAGAATATATTTAATAAT-TTAAGTTAAGAA-TATAATTTATGTAATAAG
1 TTAAGATAAAAATAAAATATATTT--TTATGTTAAAATAAGAATTA-AATATAT-TAATAAG
* * * * * **
71762 TTAAGATTAGAATAAAATAGTTTTTTTAAGTTAAGATAA-AGATTAAAAATATATTTTTAAG
1 TTAAGATAAAAATAAAATA-TATTTTTATGTTAAAATAAGA-ATT--AAATATATTAATAAG
* * * * *
71823 TTAAAATAAAAATAAAATATATATTTAGGTTAAAACAAGAATAAAATATATTTAATAAG
1 TTAAGATAAAAATAAAATATATTTTTATGTTAAAATAAGAATTAAATATA-TTAATAAG
*
71882 TTAATATAAAAATAAAATATATTTTTA
1 TTAAGATAAAAATAAAATATATTTTTA
71909 ATATTACGAT
Statistics
Matches: 213, Mismatches: 35, Indels: 33
0.76 0.12 0.12
Matches are distributed among these distances:
54 31 0.15
55 7 0.03
57 5 0.02
58 9 0.04
59 38 0.18
60 85 0.40
61 31 0.15
62 6 0.03
63 1 0.00
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (58 bp):
TTAAGATAAAAATAAAATATATTTTTATGTTAAAATAAGAATTAAATATATTAATAAG
Found at i:71819 original size:31 final size:30
Alignment explanation
Indices: 71546--71909 Score: 222
Period size: 30 Copynumber: 12.3 Consensus size: 30
71536 TATTTTGATA
* * * *
71546 ATATTTTAAATTTAAAATAAA-AACTATAAT
1 ATATTTTTAAGTTAAGATAAAGAA-TAAAAT
* *
71576 ATATTTTTGTATTTAAGATAAA-AATAAAAT
1 ATATTTTT-AAGTTAAGATAAAGAATAAAAT
* *
71606 ATATTTTT-A-TT--G-TTAA-AATAAAAAA
1 ATATTTTTAAGTTAAGATAAAGAAT-AAAAT
71631 ATATTTTTAAGTTAAGAT-AAGAATAAAAT
1 ATATTTTTAAGTTAAGATAAAGAATAAAAT
* * * * *
71660 ATATGTTTTATGATAAAAT-AAGAATTAATT
1 ATAT-TTTTAAGTTAAGATAAAGAATAAAAT
** * *
71690 ATATTAAATAATTTAAGAT-AAGAATAGAAT
1 ATATT-TTTAAGTTAAGATAAAGAATAAAAT
* * * *
71720 ATATTTAATAATTTAAG-TTAAGAATATAAT
1 ATATTT-TTAAGTTAAGATAAAGAATAAAAT
* ** *
71750 TTATGTAATAAGTTAAGAT-TAGAATAAAAT
1 ATAT-TTTTAAGTTAAGATAAAGAATAAAAT
* *
71780 AGTTTTTTTAAGTTAAGATAAAGATTAAAAAT
1 A-TATTTTTAAGTTAAGATAAAGAAT-AAAAT
*
71812 ATATTTTTAAGTTAAAATAAA-AATAAAAT
1 ATATTTTTAAGTTAAGATAAAGAATAAAAT
* *
71841 ATATATTTAGGTTAA-A-ACAAGAATAAAAT
1 ATATTTTTAAGTTAAGATA-AAGAATAAAAT
* *
71870 ATATTTAATAAGTTAATATAAA-AATAAAAT
1 ATATTT-TTAAGTTAAGATAAAGAATAAAAT
71900 ATATTTTTAA
1 ATATTTTTAA
71910 TATTACGATG
Statistics
Matches: 269, Mismatches: 43, Indels: 45
0.75 0.12 0.13
Matches are distributed among these distances:
24 6 0.02
25 13 0.05
26 1 0.00
27 5 0.02
28 4 0.01
29 47 0.17
30 144 0.54
31 42 0.16
32 7 0.03
ACGTcount: A:0.52, C:0.01, G:0.07, T:0.40
Consensus pattern (30 bp):
ATATTTTTAAGTTAAGATAAAGAATAAAAT
Found at i:72798 original size:48 final size:48
Alignment explanation
Indices: 72745--72838 Score: 161
Period size: 48 Copynumber: 2.0 Consensus size: 48
72735 TTTATATTTG
72745 TACGTTGAGTCCTTTAGAATTTTAAATTTTTATAAATTAAATTAATTA
1 TACGTTGAGTCCTTTAGAATTTTAAATTTTTATAAATTAAATTAATTA
* * *
72793 TACGTTTAGTCCTTTATAGTTTTAAATTTTTATAAATTAAATTAAT
1 TACGTTGAGTCCTTTAGAATTTTAAATTTTTATAAATTAAATTAAT
72839 AATGTTTATC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.36, C:0.06, G:0.07, T:0.50
Consensus pattern (48 bp):
TACGTTGAGTCCTTTAGAATTTTAAATTTTTATAAATTAAATTAATTA
Found at i:73225 original size:23 final size:24
Alignment explanation
Indices: 73199--73247 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
73189 ACAAGTGTAA
*
73199 AGGAACG-AAAAAATCGAAGAGAG
1 AGGAACGAAAAAAATCAAAGAGAG
73222 AGGAACGAAAAAAATCAAAGAGAG
1 AGGAACGAAAAAAATCAAAGAGAG
73246 AG
1 AG
73248 AGAGAGGAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.59, C:0.08, G:0.29, T:0.04
Consensus pattern (24 bp):
AGGAACGAAAAAAATCAAAGAGAG
Found at i:73685 original size:28 final size:27
Alignment explanation
Indices: 73654--73720 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 27
73644 CCCTGTAATA
73654 ATTTTTTAATTTCATGTCAAAT-TTTTAT
1 ATTTTTTAATTT-A-GTCAAATGTTTTAT
*
73682 ATTTATTTCAATTTAGTCACATGTTTTAT
1 ATTT-TTT-AATTTAGTCAAATGTTTTAT
*
73711 -TTATTTAATT
1 ATTTTTTAATT
73721 AATTATCATT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
26 4 0.12
27 3 0.09
28 12 0.35
29 10 0.29
30 5 0.15
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.60
Consensus pattern (27 bp):
ATTTTTTAATTTAGTCAAATGTTTTAT
Found at i:73907 original size:29 final size:29
Alignment explanation
Indices: 73877--73991 Score: 114
Period size: 29 Copynumber: 4.0 Consensus size: 29
73867 TAGGATTATA
* *
73877 TTTTTTACACTTAGGTCCC-AAACATTTTAT
1 TTTTTTACACTTAGGTCCCTAGAC--TTTAG
73907 TTTTTTACA-TATAGG-CCCTAGACTTTA-
1 TTTTTTACACT-TAGGTCCCTAGACTTTAG
*
73934 TTTTATACACTTAGGTCCCTAGACTTTAG
1 TTTTTTACACTTAGGTCCCTAGACTTTAG
**
73963 TTTTTTACACTTTA-GTTTCTAGACTTTAG
1 TTTTTTACAC-TTAGGTCCCTAGACTTTAG
73992 AGTTCTTATA
Statistics
Matches: 74, Mismatches: 5, Indels: 13
0.80 0.05 0.14
Matches are distributed among these distances:
27 12 0.16
28 17 0.23
29 26 0.35
30 19 0.26
ACGTcount: A:0.24, C:0.18, G:0.10, T:0.47
Consensus pattern (29 bp):
TTTTTTACACTTAGGTCCCTAGACTTTAG
Found at i:73933 original size:28 final size:28
Alignment explanation
Indices: 73875--73974 Score: 116
Period size: 28 Copynumber: 3.5 Consensus size: 28
73865 TTTAGGATTA
*
73875 TATTTTTTACACTTAGGTCCC-AAACATTT
1 TATTTTTTACACTTAGGTCCCTAGAC--TT
73904 TATTTTTTTACA-TATAGG-CCCTAGACTT
1 TA-TTTTTTACACT-TAGGTCCCTAGACTT
*
73932 TATTTTATACACTTAGGTCCCTAGACTT
1 TATTTTTTACACTTAGGTCCCTAGACTT
73960 TAGTTTTTTACACTT
1 TA-TTTTTTACACTT
73975 TAGTTTCTAG
Statistics
Matches: 62, Mismatches: 3, Indels: 12
0.81 0.04 0.16
Matches are distributed among these distances:
27 12 0.19
28 17 0.27
29 17 0.27
30 16 0.26
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (28 bp):
TATTTTTTACACTTAGGTCCCTAGACTT
Found at i:73990 original size:14 final size:15
Alignment explanation
Indices: 73952--73991 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
73942 ACTTAGGTCC
73952 CTAGACTTTAGTTTT
1 CTAGACTTTAGTTTT
* *
73967 TTACACTTTAG-TTT
1 CTAGACTTTAGTTTT
73981 CTAGACTTTAG
1 CTAGACTTTAG
73992 AGTTCTTATA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.23, C:0.15, G:0.12, T:0.50
Consensus pattern (15 bp):
CTAGACTTTAGTTTT
Found at i:76410 original size:19 final size:20
Alignment explanation
Indices: 76386--76433 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
76376 AATGCTTTTC
*
76386 TTTTGAAAGTAAAAATG-AA
1 TTTTGAAAATAAAAATGAAA
*
76405 TTTTGAAAATCAAAATGAAA
1 TTTTGAAAATAAAAATGAAA
76425 TTTTGAAAA
1 TTTTGAAAA
76434 AAGGATTTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.52, C:0.02, G:0.12, T:0.33
Consensus pattern (20 bp):
TTTTGAAAATAAAAATGAAA
Found at i:77769 original size:20 final size:20
Alignment explanation
Indices: 77756--77795 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
77746 GATACTCTCT
77756 AGGTAGTATTGATACTACTA
1 AGGTAGTATTGATACTACTA
77776 AGGTAGTATTGATACTACTA
1 AGGTAGTATTGATACTACTA
77796 GTTCGCTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (20 bp):
AGGTAGTATTGATACTACTA
Found at i:81521 original size:41 final size:41
Alignment explanation
Indices: 81476--81585 Score: 139
Period size: 41 Copynumber: 2.7 Consensus size: 41
81466 GCATTTTTCA
* * * *
81476 ACAAACGCCGTAAAAGAGTAGTACTTTAGCGGTGATTTTAT
1 ACAAATGCCGCAAAAGAATAGTACTTTAGCGGCGATTTTAT
* * *
81517 ACAAATGCTGCAACAGAATAGTACTTTAGCGGCGTTTTTAT
1 ACAAATGCCGCAAAAGAATAGTACTTTAGCGGCGATTTTAT
* *
81558 ACAAATGCCACAATAGAATAGTACTTTA
1 ACAAATGCCGCAAAAGAATAGTACTTTA
81586 ACGTCGTAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.29
Consensus pattern (41 bp):
ACAAATGCCGCAAAAGAATAGTACTTTAGCGGCGATTTTAT
Found at i:81529 original size:82 final size:82
Alignment explanation
Indices: 81250--81529 Score: 307
Period size: 82 Copynumber: 3.4 Consensus size: 82
81240 CAAAATGGTA
* * * * * *
81250 ACTTTAGC-GTCGTTTGTATACAAAAACGCCGTAATTGGGTTCATCGATAGTGGCGTTTATTCAA
1 ACTTTAGCGGT-GTTTTTATAC--AAACGCTGCAATAGGGTTCATCTATAGTGGCATTT-TTCAA
* *
81314 AAAACGCCGCAACAGAGTAGT
62 AAAACGCCGTAAAAGAGTAGT
* ** * * *
81335 ACTTTAGCGGCGTTTTTATACAAACGCCACAATA-GGTTCATTTATAGTGGTATTTCTCAAAAAA
1 ACTTTAGCGGTGTTTTTATACAAACGCTGCAATAGGGTTCATCTATAGTGGCATTTTTCAAAAAA
*
81399 TGCCGTGAAAA-AGTAGT
66 CGCCGT-AAAAGAGTAGT
* *
81416 ACTTTAGCGGCT-TTTTTATACAAACGATGCAATAGGGTTCATCTATAGTGGCATTTTTCAACAA
1 ACTTTAGCGG-TGTTTTTATACAAACGCTGCAATAGGGTTCATCTATAGTGGCATTTTTCAAAAA
81480 ACGCCGTAAAAGAGTAGT
65 ACGCCGTAAAAGAGTAGT
* *
81498 ACTTTAGCGGTGATTTTATACAAATGCTGCAA
1 ACTTTAGCGGTGTTTTTATACAAACGCTGCAA
81530 CAGAATAGTA
Statistics
Matches: 164, Mismatches: 25, Indels: 15
0.80 0.12 0.07
Matches are distributed among these distances:
81 52 0.32
82 84 0.51
83 10 0.06
85 17 0.10
86 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (82 bp):
ACTTTAGCGGTGTTTTTATACAAACGCTGCAATAGGGTTCATCTATAGTGGCATTTTTCAAAAAA
CGCCGTAAAAGAGTAGT
Found at i:84235 original size:42 final size:42
Alignment explanation
Indices: 84189--84578 Score: 449
Period size: 43 Copynumber: 9.1 Consensus size: 42
84179 TTTGTATTAC
84189 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGTGGTAA
1 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGTGGTAA
* * * **
84231 AAACGCCACTAAAACAAATAGCATTAGCGGCATTTATAGCAAA
1 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGT-GGTAA
**
84274 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGTGAAAA
1 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGTGGTAA
* * * *
84316 AAATGCCACTAAAACCAATAGCATTAGCGCCATTTGTGGCAAA
1 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGTGG-TAA
* * *
84359 AAACGCCACTAAAATCAATAGCATTAGCGGTGTTTGTGGCAAA
1 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGTGG-TAA
* * *
84402 AAATGCCACTAAAATCAATAGCATTAGCGGCGTTTTTGGTAAAAAA
1 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGTGGT----AA
* * * * *
84448 AAATGCCACTAAAATCAATAGGATTAGCGACGTTTATGGTAAAAA
1 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGTGGT---AA
* *
84493 AAACGCCACTAAAACCAATAGCATTAGC-GAGTTTGTGGTGA
1 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGTGGTAA
* *
84534 AAACGCCACTAAAACTAATAGCAATAGCGGCGTTTGTGGTAA
1 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGTGGTAA
84576 AAA
1 AAA
84579 AATGCCACTA
Statistics
Matches: 305, Mismatches: 36, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
41 27 0.09
42 87 0.29
43 114 0.37
44 8 0.03
45 30 0.10
46 39 0.13
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (42 bp):
AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGTGGTAA
Found at i:84336 original size:85 final size:85
Alignment explanation
Indices: 84189--84590 Score: 468
Period size: 85 Copynumber: 4.6 Consensus size: 85
84179 TTTGTATTAC
** * *
84189 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGTGGTAAAAACGCCACTAAAACAAATAGCA
1 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGTGAAAAAAATGCCACTAAAACCAATAGCA
*
84254 TTAGCGGCATTTATAGCAAA
66 TTAGCGGCATTTGTAGCAAA
84274 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGTGAAAAAAATGCCACTAAAACCAATAGCA
1 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGTGAAAAAAATGCCACTAAAACCAATAGCA
* *
84339 TTAGCGCCATTTGTGGCAAA
66 TTAGCGGCATTTGTAGCAAA
* * * *
84359 AAACGCCACTAAAATCAATAGCATTAGCGGTGTTTGTGGCAAAAAATGCCACTAAAATCAATAGC
1 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGT-GAAAAAAATGCCACTAAAACCAATAGC
* **
84424 ATTAGCGGCGTTTTTGGTAAAAAA
65 ATTAGCGGC--ATTT-GTAGCAAA
* * * * * *
84448 AAATGCCACTAAAATCAATAGGATTAGCGACGTTTATGGTAAAAAAAACGCCACTAAAACCAATA
1 AAACGCCACTAAAACCAATAGCATTAGCGGCG-TT-T-GTGAAAAAAATGCCACTAAAACCAATA
***
84513 GCATTAGC-G-AGTTTGT-GGTGA
63 GCATTAGCGGCA-TTTGTAGCAAA
* *
84534 AAACGCCACTAAAACTAATAGCAATAGCGGCGTTTGTGGTAAAAAAATGCCACTAAA
1 AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGT-G-AAAAAAATGCCACTAAA
84591 GGTAAGAGAA
Statistics
Matches: 270, Mismatches: 37, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
83 2 0.01
84 1 0.00
85 131 0.49
86 60 0.22
87 2 0.01
88 6 0.02
89 33 0.12
90 3 0.01
91 30 0.11
92 2 0.01
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (85 bp):
AAACGCCACTAAAACCAATAGCATTAGCGGCGTTTGTGAAAAAAATGCCACTAAAACCAATAGCA
TTAGCGGCATTTGTAGCAAA
Found at i:84934 original size:12 final size:12
Alignment explanation
Indices: 84913--84942 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
84903 GATATAGTAA
84913 AGAAAAAAAGAG
1 AGAAAAAAAGAG
*
84925 AGAAAGAAAGAG
1 AGAAAAAAAGAG
84937 AGAAAA
1 AGAAAA
84943 GAGAGAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (12 bp):
AGAAAAAAAGAG
Found at i:84947 original size:23 final size:23
Alignment explanation
Indices: 84911--84987 Score: 74
Period size: 22 Copynumber: 3.6 Consensus size: 23
84901 ATGATATAGT
84911 AAAG-AAA-AAAAGAGAG-AAAG
1 AAAGCAAAGAAAAGAGAGAAAAG
* *
84931 AAAG-AGAGAAAAGAGAGAAAAT
1 AAAGCAAAGAAAAGAGAGAAAAG
*
84953 AAAGCAAAGAAAAGGGA-AAAAG
1 AAAGCAAAGAAAAGAGAGAAAAG
**
84975 AAAAAAAAGAAAA
1 AAAGCAAAGAAAA
84988 AAAATCAAGT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
20 6 0.13
21 9 0.19
22 22 0.47
23 10 0.21
ACGTcount: A:0.74, C:0.01, G:0.23, T:0.01
Consensus pattern (23 bp):
AAAGCAAAGAAAAGAGAGAAAAG
Found at i:84963 original size:31 final size:27
Alignment explanation
Indices: 84911--84991 Score: 74
Period size: 31 Copynumber: 2.8 Consensus size: 27
84901 ATGATATAGT
*
84911 AAAGAAAAAAAGAGAGAAAGAAAGAGAGAA
1 AAAGAAAAAAA-AG-CAAAGAAA-AGAGAA
*
84941 AAGAGAGAAAATAAAGCAAAGAAAAGGGAA
1 AA-AGA-AAAA-AAAGCAAAGAAAAGAGAA
*
84971 AAAGAAAAAAAAG-AAAAAAAA
1 AAAGAAAAAAAAGCAAAGAAAA
84992 TCAAGTACTT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
26 7 0.16
27 4 0.09
28 4 0.09
29 3 0.07
30 9 0.20
31 10 0.22
32 6 0.13
33 2 0.04
ACGTcount: A:0.75, C:0.01, G:0.22, T:0.01
Consensus pattern (27 bp):
AAAGAAAAAAAAGCAAAGAAAAGAGAA
Found at i:84980 original size:8 final size:8
Alignment explanation
Indices: 84911--84990 Score: 52
Period size: 8 Copynumber: 9.4 Consensus size: 8
84901 ATGATATAGT
84911 AAAGAAAA
1 AAAGAAAA
* *
84919 AAAGAGAG
1 AAAGAAAA
*
84927 AAAGAAAG
1 AAAGAAAA
*
84935 AGAGAAAA
1 AAAGAAAA
*
84943 GAGAGAAAA
1 -AAAGAAAA
84952 TAAAGCAAAGA
1 -AAAG-AAA-A
**
84963 AAAGGGAA
1 AAAGAAAA
84971 AAAGAAAAA
1 AAAG-AAAA
84980 AAAGAAAA
1 AAAGAAAA
84988 AAA
1 AAA
84991 ATCAAGTACT
Statistics
Matches: 57, Mismatches: 11, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
8 31 0.54
9 18 0.32
10 7 0.12
11 1 0.02
ACGTcount: A:0.75, C:0.01, G:0.23, T:0.01
Consensus pattern (8 bp):
AAAGAAAA
Found at i:85591 original size:60 final size:60
Alignment explanation
Indices: 85519--85634 Score: 187
Period size: 60 Copynumber: 1.9 Consensus size: 60
85509 CTAAAAAGGT
* ** *
85519 GGCTCGAATAAGCAGATCGTGTAGCTATTTCATAATAAGATTTCTTATACGATAAATTAG
1 GGCTCGAATAAGCAGATCGTGTAGCTATTGCATAATAAGAGGTATTATACGATAAATTAG
*
85579 GGCTCGAATAAGCAGATCTTGTAGCTATTGCATAATAAGAGGTATTATACGATAAA
1 GGCTCGAATAAGCAGATCGTGTAGCTATTGCATAATAAGAGGTATTATACGATAAA
85635 GTAGCAAACC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (60 bp):
GGCTCGAATAAGCAGATCGTGTAGCTATTGCATAATAAGAGGTATTATACGATAAATTAG
Found at i:87746 original size:116 final size:116
Alignment explanation
Indices: 87547--87859 Score: 342
Period size: 116 Copynumber: 2.7 Consensus size: 116
87537 AGGAGATAGG
* * * * * *
87547 TCAACATTTTCAGTGAAGAGTTCATAATGAGAAGAAATCATCCGATGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGA-GGAGAAGAAATTAATA
* * * *
87612 ATGAAAAGAACTTG-TCAACCTATACTTGACTCCATCGTAGAAGGATGTGGA
65 ATGAAAAGAACTTGTTCAACATATACTCGACTCCATCGTAGAAGGAGGAGGA
* * * *
87663 TCAACATTTCCAATTGAGAGTTCATAATAAGAATAACTCATCCGATGAGAGAGAAAAAATT-ATA
1 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAG-GAGAAGAAATTAATA
* * *
87727 ATGAAAAGAACTTGTTCAACATTTACTCGATTCCATTGTAGAAGGAGGAGGA
65 ATGAAAAGAACTTGTTCAACATATACTCGACTCCATCGTAGAAGGAGGAGGA
* * * * * ** *
87779 TCAATATTTTCAGTGGAAAGTTTATAATGAGAAGAACTCATATGATGAGGAAGAGGAAATTAATA
1 TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGG-AGAAGAAATTAATA
* *
87844 ATGAGAAGAACATGTT
65 ATGAAAAGAACTTGTT
87860 TAGAACTCAA
Statistics
Matches: 163, Mismatches: 30, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
115 19 0.12
116 127 0.78
117 17 0.10
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.27
Consensus pattern (116 bp):
TCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGAGAAGAAATTAATAA
TGAAAAGAACTTGTTCAACATATACTCGACTCCATCGTAGAAGGAGGAGGA
Found at i:88202 original size:116 final size:116
Alignment explanation
Indices: 88001--88406 Score: 427
Period size: 116 Copynumber: 3.6 Consensus size: 116
87991 TCGCACAAGA
* * *
88001 GTTCGTAATGAGAAGAACTCAT-T--CGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTTAG
1 GTTCGTAATGAGAAGAACTCATCTAACGAGGAAGAAGAAGTTCATAATGAGAAGAACTTATTCAA
* ** *
88063 AACTCAACATGTCTGTCGCACAAGAAGACGGGTCAACATTTCAGAAGAAGG
66 AACTCGACACATCTATCGCACAAGAAGACGGGTCAACATTTCAGAAGAAGG
* ** *
88114 GTTCGTAATGAGAAAAACTCATCTAATTAGGAAGAAGAAGTTCATAATGAGAAGAACTTTTTCAA
1 GTTCGTAATGAGAAGAACTCATCTAACGAGGAAGAAGAAGTTCATAATGAGAAGAACTTATTCAA
* * * * * *
88179 AACTCGACACATCCATCACACAAGGAA-ATGGGCCAAGATTTCAGAAAAAGG
66 AACTCGACACATCTATCGCACAA-GAAGACGGGTCAACATTTCAGAAGAAGG
* * * * * *
88230 GTTTGTAATGAGTAGTAA-TCATCTAACGCGGAAGAAAAAATACATAATGAGAAGAACTTATTCA
1 GTTCGTAATGAGAAG-AACTCATCTAACGAGGAAGAAGAAGTTCATAATGAGAAGAACTTATTCA
* * * * * *
88294 AAAATCGACACATCTATCGCATAAGGAGAGGGGTCAACAATTTTAG-GGAAGG
65 AAACTCGACACATCTATCGCACAAGAAGACGGGTCAAC-ATTTCAGAAGAAGG
* * *
88346 GTTCGTAATGAGAAGAACTCGTCCAATGA-G-AG-AGAAGTTCATAATGAGAAGAA-TTATTCAA
1 GTTCGTAATGAGAAGAACTCATCTAACGAGGAAGAAGAAGTTCATAATGAGAAGAACTTATTCAA
88407 CCTTGGGTCA
Statistics
Matches: 239, Mismatches: 46, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
112 8 0.03
113 39 0.16
114 3 0.01
115 5 0.02
116 173 0.72
117 11 0.05
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (116 bp):
GTTCGTAATGAGAAGAACTCATCTAACGAGGAAGAAGAAGTTCATAATGAGAAGAACTTATTCAA
AACTCGACACATCTATCGCACAAGAAGACGGGTCAACATTTCAGAAGAAGG
Found at i:88367 original size:16 final size:17
Alignment explanation
Indices: 88348--88398 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
88338 AGGGAAGGGT
88348 TCGTAATGAGAAGAA-C
1 TCGTAATGAGAAGAAGC
*
88364 TCGTCCAATGAGAGAGAAGT
1 TCGT--AATGAGA-AGAAGC
*
88384 TCATAATGAGAAGAA
1 TCGTAATGAGAAGAA
88399 TTATTCAACC
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
16 4 0.14
17 4 0.14
18 14 0.48
19 4 0.14
20 3 0.10
ACGTcount: A:0.43, C:0.12, G:0.25, T:0.20
Consensus pattern (17 bp):
TCGTAATGAGAAGAAGC
Found at i:88768 original size:20 final size:20
Alignment explanation
Indices: 88743--88781 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
88733 ATTATTTGAC
88743 AAAAAT-AAAACAAAAATAAA
1 AAAAATGAAAA-AAAAATAAA
*
88763 AAAAATGAATAAAAAATAA
1 AAAAATGAAAAAAAAATAA
88782 GAAACCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (20 bp):
AAAAATGAAAAAAAAATAAA
Found at i:88780 original size:7 final size:7
Alignment explanation
Indices: 88754--88824 Score: 54
Period size: 8 Copynumber: 9.7 Consensus size: 7
88744 AAAATAAAAC
88754 AAAAATA
1 AAAAATA
88761 AAAAA-A
1 AAAAATA
**
88767 ATGAATA
1 AAAAATA
88774 AAAAATA
1 AAAAATA
**
88781 AGAAACCA
1 A-AAAATA
88789 AAAAATGA
1 AAAAAT-A
*
88797 AAAAATG
1 AAAAATA
88804 AAAAATGA
1 AAAAAT-A
88812 AAAAATGA
1 AAAAAT-A
88820 AAAAA
1 AAAAA
88825 ACCAAAGTGA
Statistics
Matches: 50, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
6 4 0.08
7 21 0.42
8 25 0.50
ACGTcount: A:0.77, C:0.03, G:0.08, T:0.11
Consensus pattern (7 bp):
AAAAATA
Found at i:88801 original size:8 final size:8
Alignment explanation
Indices: 88788--88824 Score: 67
Period size: 8 Copynumber: 4.8 Consensus size: 8
88778 ATAAGAAACC
88788 AAAAAATG
1 AAAAAATG
88796 AAAAAATG
1 AAAAAATG
88804 -AAAAATG
1 AAAAAATG
88811 AAAAAATG
1 AAAAAATG
88819 AAAAAA
1 AAAAAA
88825 ACCAAAGTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 7 0.25
8 21 0.75
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (8 bp):
AAAAAATG
Found at i:88807 original size:15 final size:15
Alignment explanation
Indices: 88789--88823 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
88779 TAAGAAACCA
88789 AAAAATGAAAAAATG
1 AAAAATGAAAAAATG
88804 AAAAATGAAAAAATG
1 AAAAATGAAAAAATG
88819 AAAAA
1 AAAAA
88824 AACCAAAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.11
Consensus pattern (15 bp):
AAAAATGAAAAAATG
Found at i:88835 original size:23 final size:23
Alignment explanation
Indices: 88749--88837 Score: 70
Period size: 23 Copynumber: 3.7 Consensus size: 23
88739 TGACAAAAAT
*
88749 AAAACAAAAATAAAAAAAATGAATAA
1 AAAACAAAAAT-GAAAAAATG-A-AA
* **
88775 AAAATAAGAAACCAAAAAATGAAA
1 AAAACAA-AAATGAAAAAATGAAA
**
88799 AAATGAAAAATGAAAAAATGAAA
1 AAAACAAAAATGAAAAAATGAAA
* *
88822 AAAACCAAAGTGAAAA
1 AAAACAAAAATGAAAA
88838 CCTGAAAGGG
Statistics
Matches: 51, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
23 26 0.51
24 7 0.14
25 1 0.02
26 14 0.27
27 3 0.06
ACGTcount: A:0.75, C:0.06, G:0.09, T:0.10
Consensus pattern (23 bp):
AAAACAAAAATGAAAAAATGAAA
Found at i:89163 original size:76 final size:77
Alignment explanation
Indices: 89034--89209 Score: 239
Period size: 76 Copynumber: 2.3 Consensus size: 77
89024 AAATTTAACA
* * * *
89034 CATCCATCACACAAGGAGATGAATCAATATTTCATCAAATAAGTTCATAATGAGAAGAACTTGTT
1 CATCCATCACACAAGGAGGTGGATCAATATTTCAGCAAAGAAGTTCATAATGAGAAGAACTTGTT
*
89099 CAACCT-TGATT
66 CAACCTGGGATT
* * * * *
89110 CATCCATCACAGAAGAAGGTGGATTAATATTTCAGCAAAGAAGTTCATTATGAGAAGAGCTTGTT
1 CATCCATCACACAAGGAGGTGGATCAATATTTCAGCAAAGAAGTTCATAATGAGAAGAACTTGTT
89175 CAACCTGGGATT
66 CAACCTGGGATT
*
89187 -GTCCATCACACAAGGAGGTGGAT
1 CATCCATCACACAAGGAGGTGGAT
89210 AAATGAAGAG
Statistics
Matches: 86, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
76 82 0.95
77 4 0.05
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (77 bp):
CATCCATCACACAAGGAGGTGGATCAATATTTCAGCAAAGAAGTTCATAATGAGAAGAACTTGTT
CAACCTGGGATT
Found at i:91007 original size:29 final size:28
Alignment explanation
Indices: 90973--91086 Score: 108
Period size: 29 Copynumber: 4.0 Consensus size: 28
90963 CTAGGATTAG
* * *
90973 ATTTTTCACACTTAGGTCCTTATACTTTAT
1 ATTTTTTACACTTAGGTCCATAGAC-TT-T
*
91003 ATTTTTTACACATA-G-CCATAGACTTT
1 ATTTTTTACACTTAGGTCCATAGACTTT
* *
91029 ATTTTTTACACTAAGGTCCCTAGACTTT
1 ATTTTTTACACTTAGGTCCATAGACTTT
*
91057 ATTTTTTTACACTTTA-GTCCCTAGACTTT
1 A-TTTTTTACAC-TTAGGTCCATAGACTTT
91086 A
1 A
91087 AAGTTATCAC
Statistics
Matches: 72, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
26 13 0.18
27 3 0.04
28 17 0.24
29 25 0.35
30 14 0.19
ACGTcount: A:0.25, C:0.20, G:0.08, T:0.46
Consensus pattern (28 bp):
ATTTTTTACACTTAGGTCCATAGACTTT
Found at i:91033 original size:56 final size:57
Alignment explanation
Indices: 90973--91086 Score: 151
Period size: 56 Copynumber: 2.0 Consensus size: 57
90963 CTAGGATTAG
* * *
90973 ATTTTTCACACTTAGGTCCTTATACTTTATATTTTTTACAC-ATAG-CCATAGACTTT
1 ATTTTTCACACTAAGGTCCCTAGACTTTAT-TTTTTTACACTATAGTCCATAGACTTT
* * *
91029 ATTTTTTACACTAAGGTCCCTAGACTTTATTTTTTTACACTTTAGTCCCTAGACTTT
1 ATTTTTCACACTAAGGTCCCTAGACTTTATTTTTTTACACTATAGTCCATAGACTTT
91086 A
1 A
91087 AAGTTATCAC
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
55 10 0.20
56 29 0.58
57 11 0.22
ACGTcount: A:0.25, C:0.20, G:0.08, T:0.46
Consensus pattern (57 bp):
ATTTTTCACACTAAGGTCCCTAGACTTTATTTTTTTACACTATAGTCCATAGACTTT
Found at i:92241 original size:13 final size:13
Alignment explanation
Indices: 92223--92253 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
92213 ATTGACACCA
92223 ATTTTAATAAGAT
1 ATTTTAATAAGAT
*
92236 ATTTTAATAATAT
1 ATTTTAATAAGAT
92249 ATTTT
1 ATTTT
92254 GAACTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (13 bp):
ATTTTAATAAGAT
Found at i:95076 original size:15 final size:15
Alignment explanation
Indices: 95058--95089 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
95048 AAATCCGATA
95058 TGTTCTAATCGGTTT
1 TGTTCTAATCGGTTT
95073 TGTTCTAATCGGTTT
1 TGTTCTAATCGGTTT
95088 TG
1 TG
95090 AAAAGTCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.22, T:0.53
Consensus pattern (15 bp):
TGTTCTAATCGGTTT
Found at i:95285 original size:12 final size:12
Alignment explanation
Indices: 95268--95311 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
95258 GAGATTTTTC
95268 ACTGTTCTA-GGT
1 ACTGTTC-ACGGT
*
95280 ACTGTTCATGGT
1 ACTGTTCACGGT
*
95292 ACTATTCACGGT
1 ACTGTTCACGGT
95304 ACTGTTCA
1 ACTGTTCA
95312 TATCGTATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 1 0.04
12 27 0.96
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (12 bp):
ACTGTTCACGGT
Found at i:97843 original size:21 final size:21
Alignment explanation
Indices: 97817--97871 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
97807 AATAGAGTTT
97817 TAGCGGCGTTTTTTAGTCCTA
1 TAGCGGCGTTTTTTAGTCCTA
97838 TAGCGGCGTTTTTTAGTCCTA
1 TAGCGGCGTTTTTTAGTCCTA
97859 TAGCGGCGTTTTT
1 TAGCGGCGTTTTT
97872 AAATGCCGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.13, C:0.18, G:0.25, T:0.44
Consensus pattern (21 bp):
TAGCGGCGTTTTTTAGTCCTA
Found at i:98038 original size:30 final size:30
Alignment explanation
Indices: 98002--98062 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
97992 AACAAACGCC
* *
98002 GCAAAAGGTCAGATTTATAGTGGCGTTTTT
1 GCAAAAGGTCAGATCTATAGCGGCGTTTTT
*
98032 GCAAAAGGTCAGATCTATAGCGGTGTTTTT
1 GCAAAAGGTCAGATCTATAGCGGCGTTTTT
98062 G
1 G
98063 GATACAAACG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.34
Consensus pattern (30 bp):
GCAAAAGGTCAGATCTATAGCGGCGTTTTT
Found at i:98083 original size:73 final size:74
Alignment explanation
Indices: 97959--98109 Score: 189
Period size: 73 Copynumber: 2.0 Consensus size: 74
97949 AAAAAATGCC
* * * * * **
97959 GCAATAGGTCAAGATCTATTGTGGCGTTTTCGGAACAAACGCCGCAAAAGGTCAG-ATTTATAGT
1 GCAAAAGGTCAAGATCTATAGCGGCGTTTTCGGAACAAACGCCACAAAAGGTCAGTATATATAAC
98023 GGCGTTTTT
66 GGCGTTTTT
* *
98032 GCAAAAGGTC-AGATCTATAGCGGTGTTTTTGGATACAAACGCCACAAAAGGTCAGTTATATATA
1 GCAAAAGGTCAAGATCTATAGCGGCGTTTTCGGA-ACAAACGCCACAAAAGGTCAG-TATATATA
98096 ACGGCGTTTTT
64 ACGGCGTTTTT
98107 GCA
1 GCA
98110 TACAAACGCC
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
72 19 0.29
73 29 0.44
75 18 0.27
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (74 bp):
GCAAAAGGTCAAGATCTATAGCGGCGTTTTCGGAACAAACGCCACAAAAGGTCAGTATATATAAC
GGCGTTTTT
Found at i:98160 original size:43 final size:43
Alignment explanation
Indices: 98032--98179 Score: 215
Period size: 43 Copynumber: 3.4 Consensus size: 43
98022 TGGCGTTTTT
*
98032 GCAAAAGGTCAGATCTATAGCGGTGTTTTTGGATACAAACGCC
1 GCAAAAGGTCAGATCTATAGCGGCGTTTTTGGATACAAACGCC
* * * *
98075 ACAAAAGGTCAGTTATATATAACGGCGTTTTTGCATACAAACGCC
1 GCAAAAGGTCAG--ATCTATAGCGGCGTTTTTGGATACAAACGCC
* *
98120 GCAAAATGTCAGATCTATAGCAGCGTTTTTGGATACAAACGCC
1 GCAAAAGGTCAGATCTATAGCGGCGTTTTTGGATACAAACGCC
98163 GCAAAAGGTCAGATCTA
1 GCAAAAGGTCAGATCTA
98180 GCACTCTGTT
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
43 54 0.59
45 37 0.41
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (43 bp):
GCAAAAGGTCAGATCTATAGCGGCGTTTTTGGATACAAACGCC
Found at i:101794 original size:6 final size:6
Alignment explanation
Indices: 101783--101809 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
101773 CAAAGCCACG
101783 AAATCA AAATCA AAATCA AAATCA AAA
1 AAATCA AAATCA AAATCA AAATCA AAA
101810 GAACAACAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.70, C:0.15, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATCA
Found at i:102143 original size:41 final size:41
Alignment explanation
Indices: 102076--102336 Score: 272
Period size: 41 Copynumber: 6.3 Consensus size: 41
102066 TTGTAAACAC
* * *
102076 AAACGCCACTAAAGTATGAA-TCTATAGCGGCGTATGTATAT
1 AAACGCCACTAAAGTA-CAAGTCTATAGCGGCGTTTGTATAA
* * *
102117 AAACTCCACTAAAGTACAATTATATAGCGGCGTTTGTATAA
1 AAACGCCACTAAAGTACAAGTCTATAGCGGCGTTTGTATAA
* * * * *
102158 AAACGCCACCAAAGTACAAGTGTATAGCGGCATTTATATAT
1 AAACGCCACTAAAGTACAAGTCTATAGCGGCGTTTGTATAA
* * * * *
102199 AAACACCACTAAATTACAAGTCTTTAGCGGCGTTTATAAACA
1 AAACGCCACTAAAGTACAAGTCTATAGCGGCGTTTGTATA-A
* *
102241 CAAACGCCACTAAAGTACAATTGTATAGCGGCGTTTGTATAA
1 -AAACGCCACTAAAGTACAAGTCTATAGCGGCGTTTGTATAA
* * * * *
102283 AAACTCCTCTAAAGTACGAGCCTTTAGCGGCGTTTGTATAA
1 AAACGCCACTAAAGTACAAGTCTATAGCGGCGTTTGTATAA
*
102324 AAACGCCATTAAA
1 AAACGCCACTAAA
102337 ATACTACTGT
Statistics
Matches: 180, Mismatches: 37, Indels: 6
0.81 0.17 0.03
Matches are distributed among these distances:
40 2 0.01
41 144 0.80
42 1 0.01
43 33 0.18
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (41 bp):
AAACGCCACTAAAGTACAAGTCTATAGCGGCGTTTGTATAA
Found at i:102354 original size:125 final size:125
Alignment explanation
Indices: 102117--102358 Score: 306
Period size: 125 Copynumber: 1.9 Consensus size: 125
102107 GTATGTATAT
* **
102117 AAACTCCACTAAAGTACAATTATATAGCGGCGTTTGTATAAAAACGCCACCAAAGTACAAGTGTA
1 AAACGCCACTAAAGTACAATTATATAGCGGCGTTTGTATAAAAACGCCACCAAAGTACAAGCCTA
* * *
102182 TAGCGGCATTTATATATAAACACCACTAAATTACAAGTCTTTAGCGGCGTTTATAAACAC
66 TAGCGGCATTTATATAAAAACACCACTAAAATACAACTCTTTAGCGGCGTTTATAAACAC
* * * * * *
102242 AAACGCCACTAAAGTACAATTGTATAGCGGCGTTTGTATAAAAACTCCTCTAAAGTACGAGCCTT
1 AAACGCCACTAAAGTACAATTATATAGCGGCGTTTGTATAAAAACGCCACCAAAGTACAAGCCTA
* * * * * *
102307 TAGCGGCGTTTGTATAAAAACGCCATTAAAATACTACTGTGTT-GCGGCGTTT
66 TAGCGGCATTTATATAAAAACACCACTAAAATACAACTCT-TTAGCGGCGTTT
102359 GTTGAAAACA
Statistics
Matches: 98, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
125 96 0.98
126 2 0.02
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.28
Consensus pattern (125 bp):
AAACGCCACTAAAGTACAATTATATAGCGGCGTTTGTATAAAAACGCCACCAAAGTACAAGCCTA
TAGCGGCATTTATATAAAAACACCACTAAAATACAACTCTTTAGCGGCGTTTATAAACAC
Found at i:103258 original size:2 final size:2
Alignment explanation
Indices: 103251--103275 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
103241 TTACCCTTAT
103251 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
103276 TATTTTGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:104352 original size:18 final size:17
Alignment explanation
Indices: 104329--104364 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
104319 ATATTGAAAA
*
104329 TATTTTTATATTTTCATT
1 TATTTTT-TACTTTCATT
104347 TATTTTTTACTTTCATT
1 TATTTTTTACTTTCATT
104364 T
1 T
104365 TTAAGAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.72
Consensus pattern (17 bp):
TATTTTTTACTTTCATT
Found at i:104625 original size:16 final size:16
Alignment explanation
Indices: 104604--104636 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
104594 TAATAAATAG
104604 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
*
104620 ACGAACATAAATGAAC
1 ACGAACATAAACGAAC
104636 A
1 A
104637 AAAAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.58, C:0.21, G:0.12, T:0.09
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:104723 original size:16 final size:16
Alignment explanation
Indices: 104702--104760 Score: 100
Period size: 16 Copynumber: 3.7 Consensus size: 16
104692 CATTTAATAA
104702 ATAAACGAACACGAAC
1 ATAAACGAACACGAAC
*
104718 ATAAACGAATACGAAC
1 ATAAACGAACACGAAC
*
104734 ATAAATGAACACGAAC
1 ATAAACGAACACGAAC
104750 ATAAACGAACA
1 ATAAACGAACA
104761 TAAACGTTGG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.58, C:0.20, G:0.12, T:0.10
Consensus pattern (16 bp):
ATAAACGAACACGAAC
Found at i:105522 original size:10 final size:10
Alignment explanation
Indices: 105507--105554 Score: 51
Period size: 10 Copynumber: 4.4 Consensus size: 10
105497 ATAAGTGAAT
105507 GAACATAAAC
1 GAACATAAAC
105517 GAACATAATCGAAC
1 GAACAT-A---AAC
105531 GAACATAAAC
1 GAACATAAAC
*
105541 GAACATAACC
1 GAACATAAAC
105551 GAAC
1 GAAC
105555 GAACATAACT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
10 22 0.67
11 1 0.03
13 1 0.03
14 9 0.27
ACGTcount: A:0.54, C:0.23, G:0.12, T:0.10
Consensus pattern (10 bp):
GAACATAAAC
Found at i:105531 original size:14 final size:13
Alignment explanation
Indices: 105514--105569 Score: 64
Period size: 14 Copynumber: 4.3 Consensus size: 13
105504 AATGAACATA
105514 AACGAACATAATCG
1 AACGAACATAA-CG
105528 AACGAACAT-A--
1 AACGAACATAACG
105538 AACGAACATAACCG
1 AACGAACATAA-CG
105552 AACGAACATAACTG
1 AACGAACATAAC-G
105566 AACG
1 AACG
105570 TTCACAAACG
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
10 9 0.24
11 1 0.03
13 2 0.05
14 25 0.68
ACGTcount: A:0.52, C:0.23, G:0.14, T:0.11
Consensus pattern (13 bp):
AACGAACATAACG
Found at i:105534 original size:24 final size:24
Alignment explanation
Indices: 105494--105562 Score: 104
Period size: 24 Copynumber: 2.9 Consensus size: 24
105484 GATTGGGTTA
*
105494 AACATAAGT-GAATGAACATAAACG
1 AACATAA-TCGAACGAACATAAACG
105518 AACATAATCGAACGAACATAAACG
1 AACATAATCGAACGAACATAAACG
*
105542 AACATAACCGAACGAACATAA
1 AACATAATCGAACGAACATAA
105563 CTGAACGTTC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
23 1 0.02
24 41 0.98
ACGTcount: A:0.55, C:0.19, G:0.13, T:0.13
Consensus pattern (24 bp):
AACATAATCGAACGAACATAAACG
Found at i:108103 original size:21 final size:21
Alignment explanation
Indices: 108056--108103 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
108046 GATATTCAAT
108056 TAAATAACATTAACTATAAAA
1 TAAATAACATTAACTATAAAA
* *
108077 TGAATAACATTAAGCTA-AATA
1 TAAATAACATTAA-CTATAAAA
108098 TAAATA
1 TAAATA
108104 TATAATATTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.58, C:0.08, G:0.04, T:0.29
Consensus pattern (21 bp):
TAAATAACATTAACTATAAAA
Found at i:108184 original size:13 final size:13
Alignment explanation
Indices: 108157--108197 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
108147 GTTCAATTAA
*
108157 AAAAATATAACATT
1 AAAAATA-AAAATT
108171 AAAAATAAAAATT
1 AAAAATAAAAATT
*
108184 AAATATAAAAATT
1 AAAAATAAAAATT
108197 A
1 A
108198 TAATATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 18 0.72
14 7 0.28
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (13 bp):
AAAAATAAAAATT
Found at i:108192 original size:19 final size:20
Alignment explanation
Indices: 108157--108195 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
108147 GTTCAATTAA
108157 AAAAATATAACATTAAAAAT
1 AAAAATATAACATTAAAAAT
108177 AAAAAT-TAA-ATATAAAAAT
1 AAAAATATAACAT-TAAAAAT
108196 TATAATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 2 0.11
19 10 0.56
20 6 0.33
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (20 bp):
AAAAATATAACATTAAAAAT
Found at i:108608 original size:21 final size:21
Alignment explanation
Indices: 108584--108626 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
108574 CCTGCGAGCG
*
108584 TGACATGTAAACCGAAGGGCT
1 TGACATATAAACCGAAGGGCT
**
108605 TGACATATAAATTGAAGGGCT
1 TGACATATAAACCGAAGGGCT
108626 T
1 T
108627 CGGATGTAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.26
Consensus pattern (21 bp):
TGACATATAAACCGAAGGGCT
Found at i:111023 original size:30 final size:31
Alignment explanation
Indices: 110967--111044 Score: 140
Period size: 30 Copynumber: 2.5 Consensus size: 31
110957 AGAACCTGAA
110967 GAACCGGCTGAAAACCGGGAAAAATCGGGGT
1 GAACCGGCTGAAAACCGGGAAAAATCGGGGT
110998 GAACCGGCTGAAAACCGGG-AAAATCGGGGT
1 GAACCGGCTGAAAACCGGGAAAAATCGGGGT
*
111028 GAACCGACTGAAAACCG
1 GAACCGGCTGAAAACCG
111045 ACAAAACCGG
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 27 0.59
31 19 0.41
ACGTcount: A:0.36, C:0.22, G:0.33, T:0.09
Consensus pattern (31 bp):
GAACCGGCTGAAAACCGGGAAAAATCGGGGT
Found at i:111061 original size:30 final size:30
Alignment explanation
Indices: 110967--111054 Score: 97
Period size: 30 Copynumber: 2.9 Consensus size: 30
110957 AGAACCTGAA
* *
110967 GAACCGGCTGAAAACCGGGA-AAAATCGGGGT
1 GAACCGACTGAAAACC--GACAAAACCGGGGT
* ** *
110998 GAACCGGCTGAAAACCGGGAAAATCGGGGT
1 GAACCGACTGAAAACCGACAAAACCGGGGT
111028 GAACCGACTGAAAACCGACAAAACCGG
1 GAACCGACTGAAAACCGACAAAACCGG
111055 TTTGAACTGC
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
29 1 0.02
30 34 0.67
31 16 0.31
ACGTcount: A:0.38, C:0.23, G:0.32, T:0.08
Consensus pattern (30 bp):
GAACCGACTGAAAACCGACAAAACCGGGGT
Found at i:111316 original size:24 final size:24
Alignment explanation
Indices: 111287--111366 Score: 151
Period size: 24 Copynumber: 3.3 Consensus size: 24
111277 TAGAAGTTCG
111287 ATTGAAGCCTAAAATTTGAGCTCA
1 ATTGAAGCCTAAAATTTGAGCTCA
111311 ATTGAAGCCTAAAATTTGAGCTCA
1 ATTGAAGCCTAAAATTTGAGCTCA
*
111335 ATTGAAGCCTAAAATTCGAGCTCA
1 ATTGAAGCCTAAAATTTGAGCTCA
111359 ATTGAAGC
1 ATTGAAGC
111367 GAAAGAATAG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 55 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (24 bp):
ATTGAAGCCTAAAATTTGAGCTCA
Found at i:112574 original size:14 final size:15
Alignment explanation
Indices: 112555--112583 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
112545 GTTAATTTAT
112555 AATTAAA-TGAAAAA
1 AATTAAATTGAAAAA
112569 AATTAAATTGAAAAA
1 AATTAAATTGAAAAA
112584 TAAAACGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (15 bp):
AATTAAATTGAAAAA
Found at i:126604 original size:14 final size:14
Alignment explanation
Indices: 126585--126616 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
126575 AGATTCTCCC
126585 ATATGTATATGTAT
1 ATATGTATATGTAT
126599 ATATGTATATGTAT
1 ATATGTATATGTAT
126613 ATAT
1 ATAT
126617 CTTCTTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (14 bp):
ATATGTATATGTAT
Found at i:130137 original size:7 final size:7
Alignment explanation
Indices: 130097--130166 Score: 61
Period size: 7 Copynumber: 9.3 Consensus size: 7
130087 ATTTTGCTTG
130097 AAGAAAA
1 AAGAAAA
*
130104 AAG-AAG
1 AAGAAAA
130110 AAGAAAA
1 AAGAAAA
130117 AATGAGTGAAA
1 AA-GA---AAA
130128 AAGAAAA
1 AAGAAAA
130135 AAGAAAAA
1 AAG-AAAA
130143 AAGAAAA
1 AAGAAAA
*
130150 AATAAAA
1 AAGAAAA
130157 AATGAAAA
1 AA-GAAAA
130165 AA
1 AA
130167 TGGAAAAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
6 5 0.10
7 25 0.48
8 15 0.29
10 2 0.04
11 5 0.10
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.06
Consensus pattern (7 bp):
AAGAAAA
Found at i:130142 original size:8 final size:8
Alignment explanation
Indices: 130125--130176 Score: 54
Period size: 8 Copynumber: 6.6 Consensus size: 8
130115 AAAATGAGTG
130125 AAAAAG-A
1 AAAAAGAA
130132 AAAAAGAA
1 AAAAAGAA
130140 AAAAAG-A
1 AAAAAGAA
*
130147 AAAAATAA
1 AAAAAGAA
*
130155 AAAATGAA
1 AAAAAGAA
*
130163 AAAATGGAA
1 AAAA-AGAA
130172 AAAAA
1 AAAAA
130177 AGAAGGGTTC
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
7 12 0.32
8 18 0.49
9 7 0.19
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.06
Consensus pattern (8 bp):
AAAAAGAA
Found at i:130145 original size:15 final size:15
Alignment explanation
Indices: 130125--130176 Score: 68
Period size: 15 Copynumber: 3.3 Consensus size: 15
130115 AAAATGAGTG
130125 AAAAAGAAAAAAGAA
1 AAAAAGAAAAAAGAA
*
130140 AAAAAGAAAAAATAA
1 AAAAAGAAAAAAGAA
*
130155 AAAATGAAAAAATGGAA
1 AAAAAGAAAAAA--GAA
130172 AAAAA
1 AAAAA
130177 AGAAGGGTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
15 25 0.81
17 6 0.19
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.06
Consensus pattern (15 bp):
AAAAAGAAAAAAGAA
Found at i:131307 original size:55 final size:55
Alignment explanation
Indices: 131099--131337 Score: 299
Period size: 53 Copynumber: 4.4 Consensus size: 55
131089 AGATTTCCCA
*
131099 ACAATTATTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
1 ACAATTGTTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
* * * * *
131154 GCAATTGATGAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
1 ACAATTGTTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
* * * * * *
131207 GCAATTGATGAAGATTG-T-GGGTCTTATACTCTCTGAAGATATAGGGGGCAGAC
1 ACAATTGTTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
* *
131260 ACAATCGTTGAAGATCGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
1 ACAATTGTTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
* *
131315 ACGATTGTTGAAGA-TATTCGAGT
1 ACAATTGTTGAAGATTGTTCGAGT
131338 TCTATTCTCC
Statistics
Matches: 163, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
53 97 0.60
54 9 0.06
55 57 0.35
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.27
Consensus pattern (55 bp):
ACAATTGTTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
Found at i:131547 original size:51 final size:51
Alignment explanation
Indices: 131322--131742 Score: 397
Period size: 54 Copynumber: 8.0 Consensus size: 51
131312 GACACGATTG
* * *
131322 TTGAAGATATTCGAGTTCTATTCTCCTTAAAGAAAGAAGGAGCGAATCCGT
1 TTGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGT
* * *
131373 TTGAAGA-GATGTCTAAGTTCCATACTCCCTTGAAGAAA-AATGGAGCGAACCCAG-
1 TTGAAGATG-T-TC-GAGTTCTATACT-CCTTAAAGAAAGAA-GGAGCGAACCC-GT
* *
131427 TCGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGGAGAGAACCCAG-
1 TTGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAA-GGAGCGAACCC-GT
131479 TTGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGT
1 TTGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGT
131530 TTGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGT
1 TTGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGT
* * * *
131581 TTAAAGAGATGTTCGAGTTCTATACTCTCTGAAGGAATAG--GGAGC-AGACACGTTTT
1 TT-GA-AGATGTTCGAGTTCTATACTC-CTTAAAGAA-AGAAGGAGCGA-ACCCG---T
* * * * * *
131637 TTAAAAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGAGAACCCGT
1 TT-GAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGT
* * * * * *
131689 TTGCAGAAGATTTTCAAGTTCTATACTCCCTGAAGGAAGAGGGAGCGAACCCGT
1 TT---GAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGT
131743 AGGCAAAAGA
Statistics
Matches: 319, Mismatches: 29, Indels: 41
0.82 0.07 0.11
Matches are distributed among these distances:
50 1 0.00
51 81 0.25
52 68 0.21
53 45 0.14
54 85 0.27
55 32 0.10
56 7 0.02
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (51 bp):
TTGAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGT
Found at i:131660 original size:55 final size:55
Alignment explanation
Indices: 131482--131792 Score: 232
Period size: 54 Copynumber: 5.8 Consensus size: 55
131472 AACCCAGTTG
* * * * * * *
131482 AAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGC-GAACCCG--TTT-G
1 AAGATTTTCGAGTTCTATACTCCCTGAAGGAAGAGGGAGCAGAACACGTTTTTAA
* * * * * *
131533 AAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGC-GAACCCG--TTTAA
1 AAGATTTTCGAGTTCTATACTCCCTGAAGGAAGAGGGAGCAGAACACGTTTTTAA
* * *
131585 AGAGATGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCAG-ACACGTTTTTTAA
1 A-AGATTTTCGAGTTCTATACTCCCTGAAGGAAGAGGGAGCAGAACACG-TTTTTAA
* * ** *
131641 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAG-AGAACCCGTTTGCAG
1 AAGATTTTCGAGTTCTATACTCCCTGAAGGAAGAGGGAGCAGAACACGTTTTTAA
* * ****
131695 AAGATTTTCAAGTTCTATACTCCCTGAAGGAAGAGGGAGC-GAACCCGTAGGCAA
1 AAGATTTTCGAGTTCTATACTCCCTGAAGGAAGAGGGAGCAGAACACGTTTTTAA
* * * *
131749 AAGATTGTACGAGTT-TCTACTCCATGAAGGAATAGGGAGC-GAAC
1 AAGATT-TTCGAGTTCTATACTCCCTGAAGGAAGAGGGAGCAGAAC
131793 CTGTTGTCTG
Statistics
Matches: 225, Mismatches: 26, Indels: 15
0.85 0.10 0.06
Matches are distributed among these distances:
51 50 0.22
52 1 0.00
53 37 0.16
54 87 0.39
55 44 0.20
56 6 0.03
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (55 bp):
AAGATTTTCGAGTTCTATACTCCCTGAAGGAAGAGGGAGCAGAACACGTTTTTAA
Found at i:131717 original size:54 final size:52
Alignment explanation
Indices: 131269--131742 Score: 392
Period size: 54 Copynumber: 8.9 Consensus size: 52
131259 CACAATCGTT
* * * *
131269 GAAGATCGTTCGAG-TCTCATACTCTCTGAAGAAATAGGGAGC-AGACACGATTGTT
1 GAAGAT-GTTCGAGTTCT-ATACTCCCTGAAGAAAGAGGGAGCGA-ACCCG-TT-TA
* * * * * *
131324 GAAGATATTCGAGTTCTATTCTCCTTAAAGAAAGAAGGAGCGAATCCGTTT-
1 GAAGATGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTA
* * * * *
131375 GAAGA-GATGTCTAAGTTCCATACTCCCTTGAAGAAAAATGGAGCGAACCCAG--TC
1 GAAGATG-T-TC-GAGTTCTATACTCCC-TGAAGAAAGAGGGAGCGAACCC-GTTTA
* * *
131429 GAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGGAGAGAACCCAG-TT-
1 GAAGATGTTCGAGTTCTATACTCCCTGAAGAAAG-AGGGAGCGAACCC-GTTTA
* * *
131481 GAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTT-
1 GAAGATGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTA
* * *
131532 GAAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTA
1 GAAGATGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTA
* * * * *
131584 AAGAGATGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGC-AGACACGTTTTTTA
1 GA-AGATGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGA-ACCCG---TTTA
* * *
131640 AAAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGAGAACCCGTTTGCA
1 GAAGATGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTT--A
* * *
131694 GAAGATTTTCAAGTTCTATACTCCCTGAAGGAAGAGGGAGCGAACCCGT
1 GAAGATGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGT
131743 AGGCAAAAGA
Statistics
Matches: 353, Mismatches: 45, Indels: 43
0.80 0.10 0.10
Matches are distributed among these distances:
50 1 0.00
51 77 0.22
52 67 0.19
53 54 0.15
54 97 0.27
55 50 0.14
56 7 0.02
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (52 bp):
GAAGATGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTA
Found at i:131751 original size:108 final size:107
Alignment explanation
Indices: 131325--131793 Score: 388
Period size: 108 Copynumber: 4.4 Consensus size: 107
131315 ACGATTGTTG
* * * * *
131325 AAGATATTCGAGTTCTATTCTCCTTAAAGAAAGAAGGAGCGAATCCGTTTGAAG-AGA-TGTCTA
1 AAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATTTTC-A
* * * * *
131388 AGTTCCATACTCCCTTGAAGAAAAATGGAGCGAACCC--AGTCG
65 AGTTCTATACTCCC-TGAAGAAAGAGGGAGCGAACCCGTAGGCA
* *
131430 AAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGGAGAGAACCCAG-TT---GAAGATGTTC
1 AAGATGTTCGAGTTCTATACTCCTTAAAGAAAG-AGGGAGCGAACCC-GTTTGAAGAAGATTTTC
* * * * **
131491 GAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTG--
64 AAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTAGGCA
* * * *
131533 AAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTAAAG-AGATGTTCGA
1 AAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATTTTCAA
* * * * ****
131597 GTTCTATACTCTCTGAAGGAATAGGGAGC-AGACACGTTTTTTAA
66 GTTCTATACTCCCTGAAGAAAGAGGGAGCGA-ACCCG--TAGGCA
* * * * *
131641 AAGATTTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGAGAACCCGTTTGCAGAAGATTTTCAA
1 AAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATTTTCAA
*
131706 GTTCTATACTCCCTGAAGGAAGAGGGAGCGAACCCGTAGGCAA
66 GTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTAGGC-A
* * * * * *
131749 AAGATTGTACGAGTT-TCTACTCCATGAAGGAATAGGGAGCGAACC
1 AAGA-TGTTCGAGTTCTATACTCCTTAAAGAAAGAGGGAGCGAACC
131794 TGTTGTCTGA
Statistics
Matches: 296, Mismatches: 49, Indels: 35
0.78 0.13 0.09
Matches are distributed among these distances:
101 1 0.00
102 13 0.04
103 54 0.18
104 52 0.18
105 34 0.11
106 15 0.05
107 2 0.01
108 77 0.26
109 47 0.16
110 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.25
Consensus pattern (107 bp):
AAGATGTTCGAGTTCTATACTCCTTAAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATTTTCAA
GTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCGTAGGCA
Done.