genome.fa.s1088.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001088.1 Hibiscus syriacus cultivar Beakdansim tig00002149_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124344

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1129--1167	17	2.2	17	86	4	51	48	0	0	51	1.00
4087--4153	32	2.1	32	97	0	125	20	5	46	26	1.74
7082--7202	39	3.1	39	83	2	136	32	17	26	23	1.97
8141--8193	27	2.0	27	88	0	79	20	13	18	47	1.82
8943--8990	23	2.1	23	84	0	60	39	25	20	14	1.91
9745--10061	155	2.0	159	92	3	534	35	15	11	36	1.85
10208--10241	18	1.9	17	88	5	50	64	0	0	35	0.94
13796--13831	12	3.0	12	83	0	54	22	13	19	44	1.86
14054--14117	22	3.0	22	80	11	78	56	18	9	15	1.66
14108--14163	24	2.4	23	81	3	58	46	19	12	21	1.83
15431--15466	2	18.0	2	100	0	72	50	0	0	50	1.00
16420--16510	2	45.5	2	100	0	182	49	0	0	50	1.00
17325--17446	43	2.8	44	85	6	167	32	28	8	30	1.86
30393--30469	33	2.4	32	86	4	118	44	14	9	32	1.76
30458--30499	21	2.0	21	95	0	75	47	7	14	30	1.71
31718--31820	21	5.0	21	71	4	93	15	19	27	37	1.92
31722--31831	41	2.7	40	90	4	175	17	20	25	37	1.94
31747--31819	20	3.6	20	75	3	83	10	21	27	39	1.87
31726--31831	20	5.2	20	69	12	72	16	19	26	36	1.94
31867--32023	21	7.6	21	71	12	119	17	21	24	35	1.95
31864--32051	41	4.6	41	88	5	258	20	20	22	35	1.96
31693--31974	142	2.0	143	89	3	435	20	22	22	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32115--32205	11	9.0	10	79	16	66	35	42	21	0	1.53
32116--32205	5	16.8	5	79	18	85	35	42	22	0	1.54
32116--32199	16	5.1	16	82	16	100	35	42	21	0	1.53
32128--32199	11	5.8	13	78	15	73	37	40	22	0	1.54
32671--32726	6	10.3	6	75	24	54	0	16	55	28	1.41
32663--32712	15	3.4	15	76	20	52	0	16	56	28	1.41
32835--33029	20	9.6	20	67	7	115	35	23	22	18	1.95
32832--33048	41	5.4	40	89	3	305	35	23	21	19	1.96
32808--32929	21	5.9	21	70	17	94	36	25	21	16	1.94
32813--33048	82	2.9	82	88	4	338	35	24	21	19	1.96
36207--36241	17	2.0	17	88	5	52	28	2	8	60	1.41
36730--36829	21	4.4	21	71	22	58	31	22	14	33	1.93
36709--36806	50	2.0	50	87	4	144	32	19	16	31	1.94
36768--36807	21	1.9	21	89	0	62	37	17	15	30	1.90
36790--36829	21	1.9	21	94	0	71	32	20	12	35	1.90
37078--37111	16	2.1	16	88	0	50	44	14	0	41	1.45
37883--37935	25	2.0	28	86	13	78	43	16	3	35	1.67
38380--38440	24	2.5	24	94	0	104	16	22	18	42	1.89
48350--48958	165	3.7	165	93	0	979	29	25	21	23	1.99
48309--48998	81	8.4	79	77	7	588	29	25	21	24	1.99
50735--50775	15	2.7	15	88	3	55	31	0	0	68	0.90
50855--50996	13	11.2	12	68	14	81	20	2	0	76	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50854--50999	11	13.3	11	68	21	60	21	2	0	75	0.97
50851--50994	50	2.9	48	74	14	134	21	3	0	74	1.01
50917--50999	29	2.7	31	79	7	98	21	3	0	74	0.97
51930--51982	24	2.0	28	86	13	78	43	15	3	37	1.64
61909--61935	13	2.1	13	100	0	54	37	14	25	22	1.93
63450--63495	24	2.0	23	83	8	58	10	23	19	45	1.82
63864--63946	42	2.0	42	95	0	148	18	15	13	53	1.74
66238--66302	31	2.1	31	82	5	78	21	16	26	35	1.95
66921--67257	35	9.5	35	77	8	167	42	2	7	46	1.46
66983--67266	73	4.0	69	83	8	288	42	2	7	47	1.44
66982--67272	35	8.1	35	80	11	274	43	2	7	46	1.44
67305--67352	12	3.9	12	83	5	51	29	2	0	68	1.01
67313--67348	17	2.1	17	89	0	54	25	2	0	72	0.98
67312--67353	21	2.0	21	90	0	66	26	2	0	71	0.98
67312--67372	4	15.0	4	78	10	61	22	6	0	70	1.10
67517--67547	16	2.0	15	93	6	53	19	41	25	12	1.87
70279--70324	19	2.4	19	92	0	74	13	13	8	65	1.48
73738--74781	249	4.2	249	91	1	1497	30	24	20	25	1.99
73667--74800	418	2.7	417	88	3	1532	30	24	20	25	1.98
75482--75760	35	8.0	35	80	9	279	43	2	7	46	1.45
75599--75755	68	2.3	70	92	2	255	43	0	7	48	1.36
75800--75847	12	3.9	12	83	5	51	29	2	0	68	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75808--75843	17	2.1	17	89	0	54	25	2	0	72	0.98
75807--75848	21	2.0	21	90	0	66	26	2	0	71	0.98
75807--75866	4	14.0	4	76	13	57	23	6	0	70	1.11
76011--76041	16	2.0	15	93	6	53	19	41	25	12	1.87
77664--77693	2	15.0	2	100	0	60	50	0	0	50	1.00
78905--79013	52	2.1	52	82	3	130	43	12	9	34	1.75
79601--79643	2	21.5	2	100	0	86	51	0	0	48	1.00
90990--91016	6	4.5	6	100	0	54	29	0	0	70	0.88
93264--93354	20	4.8	20	76	13	84	25	18	31	24	1.97
93285--93315	15	2.1	15	93	0	53	25	22	25	25	2.00
93265--93334	35	2.0	35	85	0	95	24	20	31	24	1.98
94226--94337	58	1.9	58	94	1	199	24	13	35	26	1.92
97611--97656	20	2.3	19	85	14	58	26	15	8	50	1.73
98076--98109	13	2.6	13	95	0	59	41	17	23	17	1.90
107990--108035	20	2.3	19	85	14	58	26	15	8	50	1.73
112400--112439	20	2.0	20	85	9	55	52	5	2	40	1.37
118116--118144	2	14.5	2	100	0	58	51	0	0	48	1.00
121301--121483	91	2.0	91	98	0	357	43	19	12	25	1.85

Tables:   1

The End!