genome.fa.s109.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000109.1 Hibiscus syriacus cultivar Beakdansim tig00000193_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69422

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429--506	41	1.9	41	84	5	104	30	21	15	32	1.94
6570--6609	20	2.0	21	90	5	64	40	17	0	42	1.49
7585--7635	23	2.3	22	83	6	59	39	1	3	54	1.30
10743--10769	2	13.5	2	100	0	54	0	48	0	51	1.00
21922--21969	21	2.3	21	85	7	62	37	10	20	31	1.87
25658--25705	23	2.1	23	96	0	87	35	29	22	12	1.91
25748--25806	21	2.9	19	76	14	55	40	22	11	25	1.88
26009--26050	22	1.9	22	85	9	59	33	19	9	38	1.84
26511--26565	20	2.7	21	78	13	62	21	27	18	32	1.96
30578--30611	2	17.5	2	93	6	61	47	0	0	52	1.00
32552--33034	215	2.3	215	91	2	776	51	8	11	28	1.66
33123--33179	2	28.5	2	96	0	105	50	1	0	47	1.11
33201--33256	22	2.6	21	76	20	62	44	3	7	44	1.48
33348--33412	33	2.0	32	87	3	94	50	4	4	40	1.43
33376--33425	13	3.8	13	75	17	50	54	2	4	40	1.31
33363--33436	20	3.5	20	77	14	76	52	1	5	40	1.33
33475--33547	19	3.8	20	78	8	71	43	6	4	45	1.49
33515--33617	18	5.7	18	71	15	70	39	6	9	43	1.64
33533--33653	62	2.0	62	91	3	199	40	7	7	44	1.61
33515--33652	18	7.3	18	67	20	68	39	7	7	44	1.63
33565--33782	96	2.2	99	81	11	270	39	11	5	43	1.65
33713--33793	18	4.4	18	71	11	65	39	9	6	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33694--33827	42	3.3	42	81	12	179	40	9	6	43	1.64
33793--33827	18	1.9	18	94	0	52	40	11	5	42	1.65
33798--33866	33	2.2	32	84	10	88	44	8	5	40	1.59
33894--33984	2	43.0	2	72	18	60	46	6	2	45	1.41
33879--33972	44	2.2	42	81	9	118	46	7	1	44	1.38
33900--34031	22	5.9	21	73	19	97	47	9	2	40	1.48
33881--33984	20	5.4	20	77	13	87	46	6	1	45	1.40
33882--34006	34	3.4	36	76	9	112	46	7	2	44	1.44
34067--34306	18	13.2	18	66	23	103	42	7	7	42	1.61
34089--34295	33	6.8	33	74	16	203	42	7	8	42	1.62
34067--34340	58	5.1	51	82	11	259	42	7	8	41	1.62
34122--34340	58	3.9	58	88	5	310	42	8	8	41	1.64
34155--34203	25	2.0	25	87	0	71	40	8	10	40	1.69
34214--34261	25	1.9	25	86	0	69	43	8	6	41	1.60
34400--34529	61	2.1	61	88	2	190	47	6	11	34	1.65
34650--34683	17	1.9	17	88	5	50	8	20	5	64	1.43
34682--34726	18	2.4	20	82	14	60	17	35	4	42	1.70
34741--35115	123	3.0	122	87	3	520	26	28	7	36	1.84
35250--35375	6	21.2	6	77	16	79	34	46	3	15	1.61
35253--35363	36	3.1	36	82	11	122	34	46	2	16	1.61
35531--35601	2	35.5	2	100	0	142	50	0	0	49	1.00
35597--35686	31	2.9	31	88	1	137	27	4	21	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38024--38103	20	4.0	20	90	0	115	15	13	15	56	1.68
38925--39053	51	2.6	48	86	7	168	48	5	3	42	1.41
49348--49383	9	4.1	9	92	7	56	61	0	0	38	0.96
49355--49392	14	2.6	14	87	4	58	57	0	0	42	0.98
55434--55472	19	2.1	19	100	0	78	10	25	30	33	1.89
55463--55556	21	4.5	21	79	11	104	23	13	21	41	1.89
55463--55556	41	2.3	42	86	1	136	23	13	21	41	1.89
55611--55665	23	2.4	23	84	0	65	18	20	21	40	1.92
57475--57513	20	2.0	20	94	0	69	25	35	25	12	1.92
63277--63334	20	2.8	20	81	5	62	24	32	25	17	1.96

Tables:   1

The End!