genome.fa.s1090.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001090.1 Hibiscus syriacus cultivar Beakdansim tig00002151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74018

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6123--6227	37	2.8	37	82	0	129	41	14	13	30	1.84
6585--6618	14	2.4	14	90	5	50	23	5	2	67	1.26
6580--6620	15	2.6	16	81	14	50	26	4	2	65	1.25
6580--6712	12	11.1	12	67	26	52	33	3	1	61	1.23
6780--6826	21	2.1	22	77	18	53	34	2	0	63	1.06
6781--6836	14	3.9	14	76	6	51	35	1	0	62	1.06
8055--8092	20	1.9	20	89	10	60	7	26	0	65	1.19
11596--12132	183	2.9	183	94	0	941	27	20	21	30	1.98
13288--13401	36	3.2	34	71	9	86	25	16	14	43	1.85
13272--13446	72	2.4	75	84	8	218	26	18	13	41	1.87
13288--13483	72	2.7	72	82	8	177	26	17	15	40	1.89
13526--13640	36	3.1	36	78	9	115	24	22	13	40	1.89
13540--13650	36	3.0	37	81	7	127	26	24	12	36	1.91
13854--14471	105	5.9	105	91	2	940	33	26	18	21	1.97
15014--15118	37	2.8	37	85	0	138	41	14	13	30	1.84
17791--17827	18	2.0	19	89	5	58	40	2	27	29	1.70
18976--19076	31	3.4	31	76	14	115	24	0	3	71	1.03
18991--19071	5	15.2	5	82	12	99	22	0	3	74	0.98
18976--19079	43	2.3	43	88	11	149	24	0	4	71	1.05
19161--19216	2	28.0	2	100	0	112	50	0	0	50	1.00
19993--20043	18	2.8	17	77	16	50	31	0	1	66	1.03
20831--20870	7	5.9	7	88	5	64	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20830--20873	20	2.2	20	95	0	79	40	0	0	59	0.98
23758--23850	4	24.0	4	71	14	54	18	8	1	72	1.16
35491--35684	99	2.0	99	88	2	291	36	23	19	21	1.95
37666--37731	3	21.3	3	80	11	71	34	1	1	62	1.14
37817--37853	2	18.5	2	94	0	65	45	0	2	51	1.15
38338--38367	13	2.3	13	94	0	51	23	16	0	60	1.36
40326--40388	2	31.5	2	100	0	126	50	0	49	0	1.00
40932--40980	3	15.7	3	87	4	62	34	2	0	63	1.06
42592--42808	59	3.7	57	81	9	213	17	11	10	61	1.56
42592--42814	30	7.5	30	80	4	220	17	10	10	60	1.58
42614--42814	89	2.3	90	81	6	232	17	11	10	60	1.59
43701--43743	22	1.9	22	85	4	59	44	2	4	48	1.36
44722--44947	55	4.1	54	81	3	227	29	20	19	30	1.97
44729--44933	110	1.9	110	82	4	261	29	21	18	30	1.97
44811--44969	55	2.9	55	83	3	160	27	23	19	30	1.98
44988--45103	37	3.2	37	89	4	175	20	24	18	36	1.95
48362--48430	35	2.0	35	85	5	95	31	18	26	23	1.97
59190--59217	8	3.5	8	100	0	56	50	10	0	39	1.37
64538--64562	11	2.3	11	100	0	50	68	0	0	32	0.90
64890--65335	113	4.0	113	89	3	654	27	18	15	38	1.91
68338--68415	19	3.9	19	83	13	88	56	5	8	29	1.52
68744--68793	9	5.4	9	77	13	57	4	14	0	82	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68746--68770	10	2.5	10	100	0	50	0	8	0	92	0.40
68748--68793	17	2.6	18	86	3	58	4	13	0	82	0.81

Tables:   1

The End!