Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001092.1 Hibiscus syriacus cultivar Beakdansim tig00002159_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62011

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--3660
4
927.5
4
92
4
6047
48
24
1
25
1.59
5680--5814
60
2.2
59
81
10
141
34
17
14
32
1.91
5713--5826
60
1.9
60
87
3
167
30
20
14
34
1.93
7345--7371
12
2.2
12
100
0
54
51
0
11
37
1.37
7773--7835
16
3.8
16
77
8
72
65
14
1
19
1.35
7761--7851
34
2.6
34
92
3
146
62
14
5
17
1.49
10471--10569
50
2.0
50
84
4
128
33
22
6
38
1.79
11720--11981
122
2.1
122
82
1
310
31
14
9
44
1.78
11720--12016
122
2.4
120
77
3
306
32
14
8
44
1.75
12258--12312
21
2.6
21
78
13
60
41
29
3
25
1.72
13819--14080
122
2.1
122
82
1
310
31
14
9
44
1.78
13819--14115
122
2.4
120
77
3
306
32
14
8
44
1.75
17549--17605
17
3.3
18
68
24
50
64
12
1
21
1.35
17553--17610
16
3.5
16
77
9
71
65
12
1
20
1.34
17536--17617
34
2.4
34
93
0
137
63
12
4
19
1.46
19957--20091
60
2.2
59
81
10
141
34
17
14
32
1.91
19990--20103
60
1.9
60
87
3
167
30
20
14
34
1.93
20586--20639
2
28.0
2
92
7
94
50
0
0
50
1.00
21642--21668
12
2.2
12
100
0
54
51
0
11
37
1.37
23864--23963
51
2.0
50
86
2
137
34
22
6
38
1.78
25146--25372
121
1.9
122
84
2
305
30
15
10
43
1.80
25113--25407
121
2.4
118
76
7
277
32
14
8
44
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28832--28891
16
3.6
16
74
12
59
65
11
1
21
1.34
28819--28898
34
2.4
32
89
4
115
62
12
5
20
1.48
31271--31384
60
1.9
60
87
3
167
30
20
14
34
1.93
31867--31926
2
30.0
2
100
0
120
50
0
0
50
1.00
32935--32961
12
2.2
12
100
0
54
51
0
11
37
1.37
34270--34338
28
2.4
30
80
4
88
44
7
15
31
1.74
36430--36464
15
2.3
15
95
0
61
17
34
37
11
1.85
39279--39405
60
2.1
59
82
4
155
40
17
12
29
1.86
41139--41166
2
14.0
2
100
0
56
50
0
0
50
1.00
43092--43153
2
31.0
2
100
0
124
50
0
0
50
1.00
43952--44169
112
1.9
112
91
1
357
50
12
14
22
1.77
44383--44716
167
2.0
167
99
0
659
38
13
11
37
1.80
46782--46843
28
2.2
28
85
0
88
22
17
19
40
1.91
47027--47097
30
2.4
29
88
4
115
19
22
21
36
1.95
48887--48945
29
2.0
29
100
0
118
49
13
13
23
1.78
53571--53629
29
2.0
29
100
0
118
49
13
13
23
1.78
53847--53908
2
32.0
2
74
18
51
48
1
3
46
1.28
55862--55906
21
2.1
21
83
0
54
48
4
15
31
1.65
58827--58863
2
19.0
2
94
5
67
51
0
0
48
1.00
61490--62010
165
3.2
162
84
5
710
22
28
13
35
1.92

Tables:   1

The End!