genome.fa.s1093.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001093.1 Hibiscus syriacus cultivar Beakdansim tig00002162_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  167491

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4736--4770	13	2.7	13	86	0	52	11	25	0	62	1.28
6754--6796	20	2.2	20	86	0	59	30	13	20	34	1.92
10584--10608	10	2.5	10	100	0	50	20	8	20	52	1.71
12594--12632	19	2.0	20	85	14	55	41	5	7	46	1.55
18539--18689	40	3.8	40	90	0	230	22	13	29	34	1.93
19434--19496	9	6.7	9	83	8	81	14	25	30	30	1.95
19434--19502	19	3.7	18	81	9	84	15	27	28	27	1.96
19499--19550	5	10.8	5	79	8	63	23	53	19	3	1.61
19499--19549	14	3.6	14	89	2	75	23	52	19	3	1.62
19499--19550	19	2.7	20	79	8	63	23	53	19	3	1.61
26670--26753	20	4.3	21	82	10	99	14	26	29	29	1.95
26670--26753	10	8.7	9	72	14	69	14	26	29	29	1.95
28897--28926	14	2.1	15	93	6	53	33	6	20	40	1.78
30612--30651	20	1.9	21	85	10	55	12	15	7	65	1.47
32701--32857	75	2.1	73	83	6	192	57	3	2	36	1.31
33672--33744	32	2.3	32	95	0	128	32	16	26	24	1.96
41054--41199	71	2.0	72	93	1	249	28	17	15	38	1.90
41138--41251	41	2.7	42	86	5	160	27	19	19	34	1.96
41138--41251	42	2.7	42	86	8	153	27	19	19	34	1.96
41521--41560	20	2.0	20	85	0	53	35	37	10	17	1.83
43404--43507	3	32.7	3	73	11	82	36	4	0	57	1.26
43407--43506	13	8.0	13	75	8	84	37	5	1	57	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43413--43506	32	2.9	32	88	4	136	37	5	1	56	1.29
43746--43786	2	20.5	2	100	0	82	51	0	0	48	1.00
44083--44136	26	2.1	26	82	6	65	25	3	1	68	1.16
44095--44135	10	3.9	11	87	9	50	24	4	0	70	1.06
59389--59436	24	2.1	22	81	11	53	81	0	10	8	0.88
60919--61003	3	27.0	3	81	9	98	36	2	0	61	1.09
60920--61002	16	5.0	16	80	13	105	37	2	0	60	1.10
62986--63031	5	9.0	5	80	4	56	19	0	4	76	0.96
62983--63030	21	2.3	21	88	0	69	18	0	4	77	0.93
63459--63502	23	1.9	24	86	9	65	27	4	6	61	1.41
66881--67306	214	2.0	212	97	0	807	34	7	20	36	1.82
74620--74671	19	2.7	19	84	3	68	17	30	26	25	1.97
74666--74699	17	2.0	17	100	0	68	17	52	23	5	1.66
84497--84535	18	2.1	19	85	4	53	66	5	7	20	1.36
85628--85678	25	2.2	22	82	10	57	45	1	1	50	1.24
92422--92498	37	2.1	37	85	4	102	48	1	3	46	1.28
102903--102940	20	2.0	19	90	10	60	47	10	23	18	1.79
103709--103746	18	2.1	18	95	0	67	21	44	23	10	1.83
103792--103859	29	2.3	29	84	0	82	27	7	23	41	1.81
108276--108346	10	7.3	9	74	13	61	16	29	26	26	1.97
108258--108346	20	4.5	19	76	14	83	16	28	25	29	1.97
108258--108346	29	3.0	29	91	8	137	16	28	25	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108357--108394	17	2.2	17	100	0	76	18	47	23	10	1.79
108384--108414	7	4.4	7	91	0	53	16	25	29	29	1.96
115575--115681	9	11.3	9	80	7	106	15	28	28	27	1.96
115575--115681	19	5.6	19	76	15	105	15	28	28	27	1.96
115575--115677	29	3.6	29	83	8	122	15	28	28	28	1.96
115603--115692	28	3.2	28	82	3	81	16	32	28	22	1.96
115677--115727	17	3.3	17	71	25	58	17	43	23	15	1.88
115683--115715	12	2.8	12	100	0	66	18	45	24	12	1.83
120875--120911	13	2.8	13	95	0	65	18	45	24	10	1.81
120929--121002	29	2.6	29	95	0	139	25	9	20	44	1.81
120987--121054	29	2.3	29	84	0	82	27	7	23	41	1.81
134192--134285	44	2.1	44	88	3	136	38	7	22	31	1.82
134215--134287	24	3.2	24	63	28	59	39	8	20	31	1.82
141679--141782	44	2.3	44	88	6	147	37	6	23	32	1.81
144926--145156	44	5.2	44	95	0	408	41	25	10	22	1.85
151360--151547	21	8.7	21	81	11	218	42	25	10	22	1.85
151360--151579	44	4.9	42	81	10	201	42	25	10	21	1.84
151360--151578	65	3.2	65	83	7	260	42	25	10	21	1.84
151513--151577	30	2.2	30	91	0	103	47	21	10	20	1.80
151354--151556	109	1.9	108	87	5	304	41	25	10	22	1.85
154140--154177	11	3.5	11	96	0	67	55	5	0	39	1.23
165712--165754	12	3.7	12	84	6	52	55	9	9	25	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167023--167073	26	1.9	27	84	11	70	37	5	7	49	1.56

Tables:   1

The End!