genome.fa.s1094.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001094.1 Hibiscus syriacus cultivar Beakdansim tig00002168_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103829

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136--169	12	2.8	12	100	0	68	73	0	26	0	0.83
2418--2473	19	2.9	19	78	2	58	37	23	19	19	1.94
2629--2665	14	2.6	14	91	0	65	45	24	0	29	1.53
4002--4071	21	3.3	21	68	5	61	20	20	37	22	1.95
4343--4524	89	2.0	89	89	7	278	46	19	12	21	1.82
6204--6325	20	6.8	19	69	20	84	43	20	23	12	1.86
6253--6308	14	3.6	14	74	21	58	39	25	25	10	1.87
6229--6325	33	2.9	33	95	1	167	41	22	24	11	1.87
6326--6370	19	2.4	19	88	0	63	13	15	22	48	1.79
6944--6993	20	2.5	20	86	3	64	22	22	14	42	1.88
7054--7105	20	2.5	21	87	3	70	21	23	17	38	1.93
7012--7120	41	2.7	41	74	5	96	29	18	21	31	1.97
7095--7147	21	2.5	22	78	6	65	35	18	24	20	1.95
9085--9110	13	2.0	13	100	0	52	46	0	30	23	1.53
11246--11284	18	2.2	17	90	4	60	28	0	12	58	1.34
12275--12350	29	2.6	29	75	24	79	52	5	1	40	1.32
12523--12563	20	2.0	21	85	4	57	58	2	2	36	1.24
13521--13558	9	4.1	9	87	12	51	0	10	2	86	0.66
13507--13554	12	3.7	12	78	15	51	0	14	4	81	0.84
13969--14003	15	2.4	15	95	4	63	37	0	0	62	0.95
14002--14078	3	25.7	3	97	0	145	64	0	1	33	1.01
14397--14950	113	4.9	113	97	0	1029	29	18	13	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15675--16298	83	7.5	83	95	1	1099	36	23	13	26	1.92
16647--16673	12	2.2	12	100	0	54	33	7	25	33	1.84
17354--17399	6	7.7	6	81	13	51	0	19	0	80	0.71
17355--17404	10	5.1	9	81	13	55	0	18	0	82	0.68
28389--28464	29	2.6	29	75	24	79	52	5	1	40	1.32
28636--28676	20	2.0	21	85	4	57	58	2	2	36	1.24
28708--28746	19	2.1	19	90	9	62	66	5	0	28	1.12
29637--29668	12	2.7	12	90	0	55	0	12	0	87	0.54
30078--30112	15	2.4	15	95	4	63	37	0	0	62	0.95
30111--30229	3	39.7	3	96	0	220	64	0	1	33	1.03
33929--33967	6	6.3	6	88	5	60	20	15	15	48	1.81
36043--36077	2	17.5	2	100	0	70	51	0	0	48	1.00
39077--39172	37	2.6	37	83	1	104	34	17	18	29	1.94
39445--39849	108	3.7	108	80	7	444	35	18	23	22	1.96
39445--39841	54	7.3	54	80	3	388	35	18	24	21	1.95
39827--40719	55	16.3	55	87	2	1224	32	14	23	29	1.94
41020--41058	18	2.2	17	90	4	60	28	0	12	58	1.34
43973--44052	33	2.4	33	91	0	133	31	20	17	31	1.95
49797--49864	20	3.4	20	64	8	57	44	13	32	10	1.77
49804--49880	40	1.9	40	100	0	154	41	14	31	12	1.83
54603--54670	20	3.4	20	64	8	57	44	13	32	10	1.77
54610--54686	40	1.9	40	100	0	154	41	14	31	12	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61379--61447	22	3.1	22	100	0	138	37	13	13	36	1.83
62893--62946	24	2.3	23	79	17	65	9	37	9	44	1.69
63133--63797	6	110.8	6	99	0	1267	51	15	0	33	1.44
64278--64369	36	2.5	37	77	8	98	35	13	21	29	1.91
64413--64801	36	10.6	36	81	10	286	36	14	19	29	1.91
64221--64620	137	2.9	136	81	9	458	38	13	21	27	1.90
64550--64809	39	6.8	39	88	4	343	35	15	19	30	1.92
64550--64809	77	3.4	78	85	5	343	35	15	19	30	1.92
64880--65056	75	2.3	75	80	6	196	40	13	15	30	1.86
70535--70568	14	2.7	12	90	9	50	52	14	14	17	1.74
71973--72091	30	3.9	29	73	13	82	58	8	13	19	1.60
72651--72730	3	26.7	3	100	0	160	66	0	0	33	0.92
76942--77001	22	2.7	22	97	0	111	35	15	15	35	1.88
79980--80016	2	18.5	2	100	0	74	48	0	0	51	1.00
81223--81307	24	3.5	25	74	18	72	45	0	0	54	1.00
81277--81310	2	17.5	2	93	6	61	50	0	0	50	1.00
81331--81375	12	3.5	13	82	11	58	13	13	51	22	1.75
81331--81374	13	3.5	13	90	3	63	13	13	52	20	1.74
81648--81682	2	17.5	2	87	0	52	42	0	5	51	1.25
82238--82313	22	3.5	22	92	0	125	38	10	23	27	1.88
86997--87033	12	3.0	12	92	4	56	18	54	16	10	1.71
87041--87156	2	61.5	2	76	11	111	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87095--87153	21	2.8	22	84	7	68	54	0	0	45	0.99
87154--87205	23	2.2	24	89	3	79	26	46	13	13	1.80
87169--87207	12	3.3	12	85	7	62	25	51	15	7	1.70
87408--87432	5	5.0	5	100	0	50	20	0	0	80	0.72
87472--87519	11	4.2	11	82	10	60	33	2	2	62	1.18

Tables:   1

The End!