genome.fa.s1096.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001096.1 Hibiscus syriacus cultivar Beakdansim tig00002171_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71741

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1761--1811	27	2.0	27	88	7	79	19	17	19	43	1.89
11427--11786	76	4.8	76	87	1	490	27	9	21	41	1.84
12785--12943	76	2.1	76	87	0	228	28	14	17	38	1.89
13246--13321	28	2.6	29	87	6	109	23	21	38	17	1.93
16736--17223	76	6.5	75	77	8	411	30	10	18	40	1.84
19401--19450	21	2.4	21	79	0	55	42	12	20	26	1.86
19417--19467	21	2.4	21	90	0	75	39	15	23	21	1.92
23580--23614	10	3.4	10	84	7	52	17	8	2	71	1.23
23581--23615	11	3.3	11	88	4	54	14	8	2	74	1.17
23638--23671	5	6.6	5	93	6	59	17	0	0	82	0.67
27644--27760	44	2.7	44	84	5	148	32	21	17	29	1.96
27751--27956	43	4.8	43	81	1	225	35	23	18	22	1.96
27707--27960	86	3.0	85	81	6	273	33	23	18	24	1.96
31240--31394	79	2.0	79	93	2	267	29	2	12	55	1.51
33313--33674	76	4.8	77	83	4	430	29	11	18	39	1.87
33324--33674	152	2.3	152	86	1	481	29	12	18	39	1.87
33546--33802	134	1.9	134	88	0	388	29	10	18	40	1.85
33675--34199	76	6.9	76	84	1	651	29	10	19	40	1.84
33476--33884	210	1.9	210	90	0	647	29	11	19	40	1.86
33876--33924	25	1.9	26	87	4	73	28	2	22	46	1.63
33313--34026	362	2.0	362	87	1	1020	29	10	19	40	1.85
34375--34669	69	4.4	67	76	8	235	30	20	27	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34492--34599	30	3.6	30	93	1	180	27	21	32	18	1.97
35769--35799	16	1.9	16	93	0	53	32	12	19	35	1.90
36256--36312	28	2.0	28	86	0	78	43	22	1	31	1.64
37161--37214	27	2.0	27	100	0	108	40	11	11	37	1.76
44249--44306	24	2.4	24	85	0	71	22	17	18	41	1.90
44266--44311	24	1.9	24	86	0	65	21	15	19	43	1.87
50003--50070	24	2.8	24	86	0	91	54	11	13	20	1.70
50003--50068	12	5.5	12	72	0	60	54	12	12	21	1.69
53760--53847	24	3.7	24	85	8	126	55	10	13	20	1.67
53786--53851	12	5.5	12	71	7	62	54	12	12	21	1.69
53759--53858	24	4.1	24	78	10	87	54	10	14	22	1.69
65950--66008	21	2.8	21	87	5	84	20	5	27	47	1.71

Tables:   1

The End!