Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001098.1 Hibiscus syriacus cultivar Beakdansim tig00002178_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91955

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4292--4318
7
3.9
7
100
0
54
70
0
0
29
0.88
8140--8200
23
2.7
23
86
0
86
27
27
24
19
1.99
8216--8429
102
2.1
101
95
3
333
35
23
14
26
1.93
13101--13161
23
2.7
23
86
0
86
27
27
24
19
1.99
13177--13394
103
2.1
103
96
0
400
36
22
13
27
1.92
14483--14513
16
1.9
16
93
0
53
51
22
0
25
1.48
16296--16452
70
2.2
70
82
4
192
21
21
19
38
1.94
21371--21434
31
2.1
31
84
0
83
53
15
12
18
1.73
22018--22058
17
2.4
17
87
0
55
21
19
31
26
1.97
22512--22537
2
13.0
2
100
0
52
50
0
0
50
1.00
23515--23585
30
2.4
30
97
0
133
40
11
15
32
1.83
23681--23770
31
2.9
31
89
1
135
36
10
14
38
1.80
24301--24326
2
13.0
2
100
0
52
50
0
0
50
1.00
28985--29329
190
1.8
186
82
6
435
28
21
22
26
1.99
32908--32960
24
2.2
24
83
6
63
54
3
1
39
1.29
38885--38929
23
2.0
23
86
8
65
66
2
0
31
1.04
39369--39482
59
1.9
59
83
3
149
34
21
4
40
1.73
42973--43050
29
2.7
29
92
2
131
43
30
0
25
1.55
43000--43041
21
2.0
22
86
13
61
42
33
0
23
1.55
46628--46682
28
2.0
28
85
7
76
47
3
14
34
1.62
50708--50821
35
3.3
35
87
0
156
42
21
0
35
1.60
52591--52702
35
3.2
35
88
0
161
34
0
23
41
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53261--53290
15
2.0
15
100
0
60
40
13
13
33
1.83
53455--53490
3
12.0
3
100
0
72
33
0
0
66
0.92
58421--58506
42
2.0
42
93
0
145
47
4
5
41
1.48
58829--58856
2
14.0
2
100
0
56
50
0
0
50
1.00
59596--59653
24
2.5
24
80
2
73
48
12
13
25
1.77
78780--78894
7
16.4
7
79
9
85
2
36
0
60
1.10
78803--78894
42
2.2
42
86
7
125
0
38
0
61
0.96
86558--86600
20
2.2
20
86
0
59
37
16
11
34
1.85
87755--87839
7
12.3
7
83
7
93
69
0
25
4
1.08
90133--90174
20
2.2
19
87
12
59
33
7
11
47
1.68
90210--90265
20
2.8
20
94
0
94
30
37
14
17
1.90
90229--90373
65
2.2
64
81
12
163
32
24
17
25
1.97
90314--90420
45
2.4
45
85
4
135
29
20
20
28
1.98
91455--91510
7
8.0
7
82
7
69
66
0
32
1
1.03
91455--91536
18
4.7
17
83
7
96
65
0
30
3
1.09
91457--91536
3
23.3
3
78
18
61
66
0
30
3
1.09

Tables:   1

The End!