Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001099.1 Hibiscus syriacus cultivar Beakdansim tig00002180_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81086

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
961--995
18
1.9
18
100
0
70
71
0
5
22
1.07
5472--5518
23
2.0
24
95
4
87
17
31
21
29
1.96
7873--7925
3
17.7
3
88
7
72
37
0
0
62
0.96
7886--7937
24
2.2
24
89
0
77
48
0
0
51
1.00
7892--7937
21
2.2
21
88
0
65
50
0
0
50
1.00
20818--20877
7
8.9
7
82
10
72
85
0
15
0
0.61
20818--20869
17
3.1
17
88
2
79
86
0
13
0
0.57
20815--20877
23
2.7
23
85
11
92
84
0
15
0
0.63
21861--22240
94
4.1
94
88
5
565
30
16
20
33
1.94
22129--22347
115
1.9
115
91
1
343
34
15
20
29
1.94
23071--23581
113
4.5
113
84
3
688
38
13
18
28
1.90
23410--23474
20
3.3
20
64
12
53
40
12
23
24
1.89
23071--23581
225
2.3
225
93
2
857
38
13
18
28
1.90
23560--23837
120
2.3
118
85
3
344
42
15
17
24
1.87
41428--41486
23
2.6
23
94
0
100
20
27
27
25
1.99
41724--41773
24
2.1
24
88
0
73
8
30
22
40
1.82
53179--53225
22
2.2
22
84
3
60
36
12
12
38
1.82
70945--71000
22
2.5
22
82
11
60
32
3
12
51
1.56
71758--71786
15
1.9
15
100
0
58
37
6
0
55
1.27
75015--75046
3
11.0
3
93
6
57
34
0
0
65
0.93
75015--75042
14
2.0
14
100
0
56
35
0
0
64
0.94
75015--75050
17
2.2
16
95
5
63
33
0
0
66
0.92

Tables:   1

The End!