genome.fa.s11.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000011.1 Hibiscus syriacus cultivar Beakdansim tig00000017_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62787

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2209--2354	45	3.2	45	81	1	166	29	23	8	39	1.84
3559--3607	20	2.5	20	93	0	89	22	28	10	38	1.87
15217--15278	3	20.7	3	100	0	124	32	0	0	67	0.91
18768--18867	3	33.7	3	97	2	193	34	0	0	66	0.92
19606--19681	31	2.5	31	100	0	152	14	14	38	32	1.87
21661--22081	41	10.3	40	73	13	238	31	14	19	34	1.92
21735--22054	82	3.9	82	84	3	412	31	13	20	35	1.91
21707--22077	82	4.5	82	81	6	371	31	14	19	34	1.91
31152--31203	21	2.5	21	70	0	50	42	17	36	3	1.67
31648--31853	43	4.8	43	83	5	211	34	24	17	23	1.96
35960--36015	29	1.9	29	82	7	69	35	5	21	37	1.76
37072--37102	16	1.9	16	100	0	62	58	22	12	6	1.58
37170--37228	10	5.7	10	73	15	57	57	20	11	10	1.63
37174--37222	16	3.1	16	93	0	89	57	22	12	8	1.61
37969--38016	10	4.4	10	78	19	51	54	22	12	10	1.68
37976--38006	14	2.2	14	94	0	53	54	22	12	9	1.67
37956--38017	24	2.6	24	89	5	90	54	19	12	12	1.70
39702--39758	25	2.3	25	96	0	105	29	19	24	26	1.98
41557--41627	35	2.0	35	91	0	115	25	9	12	52	1.70
43561--43608	20	2.3	21	92	3	80	37	22	18	20	1.94
43637--43746	19	5.6	19	86	3	139	38	21	9	30	1.85
43922--43960	16	2.5	15	84	8	51	28	5	0	66	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44701--44778	24	3.2	24	90	0	120	23	20	17	38	1.93
47033--47068	18	2.0	18	94	0	63	55	25	2	16	1.55
47406--47477	20	3.6	20	92	0	117	22	13	20	43	1.87
47543--47701	65	2.4	65	93	2	266	49	17	2	30	1.60
49006--49099	21	4.5	21	73	7	84	20	17	38	24	1.93
49003--49099	42	2.3	41	87	5	140	19	16	40	23	1.91
49088--49143	21	2.7	21	94	0	94	28	17	25	28	1.98
49026--49118	42	2.2	42	84	0	123	21	18	35	24	1.95
49289--49322	4	8.5	4	86	0	50	70	2	0	26	1.01
51277--51342	20	3.3	20	91	0	105	46	22	18	12	1.81
51895--52019	20	6.2	20	79	4	135	18	12	24	44	1.85
51895--51983	41	2.2	41	89	2	135	15	13	22	48	1.80
53575--53724	66	2.3	66	88	0	210	36	23	12	28	1.90
56791--56845	15	3.3	17	78	17	62	72	1	0	25	0.94
57989--58049	5	11.4	5	78	16	61	75	0	4	19	0.98
57998--58047	16	2.9	17	82	11	66	78	0	4	18	0.91
57999--58049	22	2.3	23	93	3	86	76	0	3	19	0.94
58070--58149	35	2.3	35	91	4	126	47	7	3	41	1.50
58082--58254	35	4.6	36	77	14	136	43	5	5	44	1.52
58111--58263	78	2.0	76	82	11	186	45	6	5	43	1.52
58070--58459	37	10.4	37	72	11	262	44	9	4	42	1.56
58358--58459	35	2.8	34	73	15	89	46	7	1	44	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58065--58401	77	4.5	75	71	17	198	44	9	4	41	1.56
58370--58436	35	2.0	35	85	5	93	46	8	1	43	1.44
61999--62787	295	2.7	292	81	8	906	40	13	11	34	1.80

Tables:   1

The End!