genome.fa.s1102.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001102.1 Hibiscus syriacus cultivar Beakdansim tig00002183_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83826

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550--1069	54	9.8	54	87	4	700	32	13	17	36	1.89
550--1069	160	3.3	160	88	3	712	32	13	17	36	1.89
9806--9847	13	3.1	14	80	10	52	28	21	21	28	1.99
9864--9906	22	2.0	22	90	9	70	25	18	16	39	1.91
12386--12511	47	2.8	45	83	5	155	29	22	7	40	1.82
16593--16703	6	17.3	6	70	15	62	2	17	3	76	1.04
16590--16685	17	5.5	17	73	19	65	3	16	3	77	1.03
16606--16656	21	2.5	22	84	12	72	3	19	3	72	1.16
16591--16701	33	3.5	30	80	15	100	2	17	3	76	1.04
16624--16702	32	2.5	31	80	11	97	2	15	3	78	1.00
16624--16700	16	4.8	16	74	16	61	2	14	3	79	0.99
17792--17821	6	4.8	6	95	4	51	33	30	16	20	1.94
19517--19642	47	2.8	45	83	5	155	29	22	7	40	1.82
33893--33923	16	1.9	16	100	0	62	25	22	19	32	1.97
36579--36766	89	2.1	90	88	3	272	23	19	14	42	1.89
36574--36771	45	4.4	45	84	2	265	23	19	15	40	1.90
41819--41850	3	10.7	3	100	0	64	65	0	0	34	0.93
44122--44172	17	2.9	18	85	5	68	3	19	3	72	1.16
44628--44689	3	20.7	3	74	12	56	62	3	3	30	1.26
44628--44691	24	2.7	23	83	11	76	64	3	3	29	1.24
44928--45158	40	5.6	40	77	9	162	24	19	32	23	1.98
45207--45268	28	2.2	28	85	5	81	53	12	9	24	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46118--46352	65	3.6	63	83	7	181	44	14	11	29	1.80
46179--46343	65	2.5	67	92	3	275	44	12	12	30	1.79
46307--46579	29	9.3	29	92	2	429	47	13	9	29	1.74
46312--46579	147	1.8	147	94	1	475	47	13	8	30	1.74
46820--46923	36	3.0	36	81	4	124	35	11	20	32	1.88
47480--47547	4	17.0	4	93	0	118	25	0	25	50	1.50
49371--49452	26	3.4	26	69	19	86	41	9	24	24	1.85
49362--49451	46	2.0	45	91	2	144	40	10	25	24	1.86
50820--50845	5	5.2	5	100	0	52	42	19	19	19	1.90
50857--50918	32	2.0	32	96	3	117	61	9	14	14	1.57
54074--54121	19	2.6	19	86	3	62	4	18	4	72	1.17
54089--54133	19	2.4	19	92	0	72	4	15	6	73	1.21
54581--54642	3	20.7	3	74	12	56	62	3	3	30	1.26
54581--54644	24	2.7	23	83	11	76	64	3	3	29	1.24
55486--55775	45	6.4	45	89	1	438	22	19	15	42	1.89
55650--55726	26	3.2	26	63	30	71	20	20	14	44	1.86
62290--62325	17	2.1	17	94	0	63	22	13	5	58	1.56
63934--64091	85	1.9	85	85	7	223	31	16	19	32	1.94
64071--64101	13	2.4	13	94	0	53	32	19	19	29	1.96
65447--65490	19	2.2	21	88	8	65	20	18	18	43	1.89
77827--77868	22	1.9	22	100	0	84	19	19	21	40	1.92
79328--79389	30	2.1	30	100	0	124	43	9	9	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82175--82208	17	2.0	17	94	0	59	44	17	5	32	1.73
82770--82813	19	2.3	19	88	0	61	38	25	4	31	1.76
82779--82815	19	1.9	19	94	0	65	35	21	5	37	1.77

Tables:   1

The End!