genome.fa.s1104.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001104.1 Hibiscus syriacus cultivar Beakdansim tig00002185_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105997

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591--634	20	2.2	20	83	0	52	50	0	13	36	1.42
3286--3339	3	18.3	3	79	11	58	61	0	3	35	1.14
3286--3339	22	2.6	20	85	11	65	61	0	3	35	1.14
3529--3971	131	3.4	131	82	4	484	31	15	20	33	1.93
5635--5695	2	31.5	2	93	6	108	49	0	0	50	1.00
9444--9470	6	4.5	6	100	0	54	51	14	14	18	1.76
10724--11065	129	2.7	131	81	5	430	39	17	10	32	1.84
12820--12890	31	2.3	31	80	4	81	32	29	18	19	1.96
13615--13648	17	2.0	17	94	0	59	38	11	11	38	1.79
13650--13692	16	2.7	16	85	0	59	37	23	16	23	1.94
17032--17098	32	2.1	31	86	8	91	28	25	28	17	1.98
21028--21077	12	4.2	12	86	0	64	58	14	8	20	1.61
21033--21077	18	2.5	18	85	0	63	57	15	8	17	1.63
31429--31513	32	2.7	32	83	3	91	28	18	15	37	1.91
31815--31843	2	14.5	2	100	0	58	48	0	0	51	1.00
33336--33369	16	2.1	16	88	0	50	61	0	5	32	1.20
33537--33620	11	7.3	11	71	19	55	59	2	3	34	1.28
34063--34162	35	2.8	37	81	6	114	32	15	14	39	1.86
34678--35563	109	8.5	105	76	10	593	21	21	24	32	1.98
35121--35593	105	4.7	97	78	7	462	20	21	23	33	1.97
34623--35593	98	9.3	103	78	9	769	22	21	24	32	1.98
34626--35593	203	4.7	203	82	7	1041	22	20	24	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36047--36227	65	2.8	65	92	0	299	35	12	20	31	1.89
36112--36467	102	3.5	102	92	0	586	37	12	20	29	1.89
36177--36485	37	8.9	36	67	17	116	38	12	21	28	1.90
36233--36392	50	3.2	50	61	10	117	36	11	20	31	1.88
36381--36485	36	2.9	36	91	1	156	40	13	22	23	1.90
37982--38043	20	3.0	21	79	9	65	1	16	6	75	1.08
38000--38052	23	2.4	22	84	6	72	0	15	5	79	0.91
41394--41431	16	2.4	16	82	4	51	63	0	5	31	1.17
42124--42223	35	2.8	37	80	6	105	32	15	15	38	1.88
46266--46459	93	2.1	95	81	4	232	39	12	22	26	1.89
46803--47305	54	9.3	54	89	1	679	32	13	17	36	1.89
53612--53652	22	1.9	21	85	5	55	53	0	7	39	1.29
57482--57528	23	2.1	22	84	11	60	27	27	21	23	1.99
62771--63429	54	12.2	54	87	2	838	34	13	15	36	1.86
76899--77037	36	3.9	36	88	0	199	34	24	20	20	1.96
80325--80354	7	4.3	7	95	0	51	30	0	40	30	1.57
85439--85471	16	2.1	16	88	5	50	75	3	0	21	0.93
87012--87361	91	3.9	91	89	1	488	26	22	15	36	1.93
90687--90754	7	9.9	7	79	7	50	0	22	0	77	0.76
90685--90750	16	4.2	16	83	9	82	0	21	0	78	0.75
90692--90750	23	2.5	24	94	2	102	0	20	0	79	0.73
90694--90755	17	3.6	17	81	12	74	0	19	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90692--90757	16	4.2	15	83	14	80	0	21	0	78	0.75
90692--90796	16	6.5	16	74	16	76	2	18	2	76	1.04
94122--94156	18	1.9	18	88	0	52	54	0	17	28	1.43
96046--96080	18	1.9	18	88	0	52	28	17	0	54	1.43
99568--99600	16	2.1	16	88	11	50	72	3	0	24	0.98
100749--100796	2	24.0	2	100	0	96	50	0	0	50	1.00
100883--100925	22	2.0	22	100	0	86	55	27	0	16	1.41
101972--102268	45	6.6	45	80	6	278	34	8	17	39	1.81
102375--102492	58	2.0	58	82	6	141	39	3	13	43	1.61
102620--102690	33	2.1	35	84	7	94	35	9	8	46	1.67

Tables:   1

The End!