Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001105.1 Hibiscus syriacus cultivar Beakdansim tig00002187_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47151

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5139--5217
39
2.0
39
90
0
122
22
13
3
59
1.51
5721--5757
15
2.4
16
86
9
58
48
0
2
48
1.15
5721--5761
16
2.5
16
88
4
55
46
0
4
48
1.23
6870--6902
7
4.9
7
88
7
50
39
0
0
60
0.97
6877--6901
13
1.9
13
100
0
50
44
0
0
56
0.99
15351--15487
47
2.8
48
83
6
150
43
14
22
19
1.88
17537--17573
15
2.4
16
90
4
58
48
0
0
51
1.00
17525--17576
16
2.8
21
70
29
62
46
0
0
53
1.00
20486--20522
8
4.6
8
89
0
56
37
0
8
54
1.30
20781--20817
17
2.2
17
100
0
74
37
0
21
40
1.54
21705--21851
77
1.9
77
83
8
192
44
5
12
37
1.65
30355--30538
54
3.4
54
85
3
262
26
18
23
32
1.97
30355--30562
54
3.9
54
82
3
249
28
17
21
33
1.96
30355--30562
108
1.9
108
84
3
276
28
17
21
33
1.96
30880--30935
19
2.8
20
81
10
60
32
19
14
33
1.92
30893--30936
19
2.3
19
84
0
61
31
20
11
36
1.88
33446--33511
24
2.8
24
90
4
98
24
18
18
39
1.92
33450--33513
12
5.3
12
72
20
62
23
17
20
39
1.92
35834--35879
13
3.6
12
88
5
56
17
13
23
45
1.83
37556--37632
23
3.2
23
90
5
109
45
1
2
50
1.23
37540--37617
4
20.5
4
71
19
60
47
1
1
50
1.17
38960--39114
7
21.9
7
69
22
76
39
1
5
54
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38926--39085
38
4.2
36
78
14
130
38
0
4
56
1.24
38934--39052
45
2.6
45
81
11
118
37
0
4
57
1.24
38923--39078
76
2.1
73
81
11
183
39
0
3
56
1.22

Tables:   1

The End!