genome.fa.s1106.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001106.1 Hibiscus syriacus cultivar Beakdansim tig00002188_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71661

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3455--3512	29	2.0	30	82	3	73	39	8	17	34	1.80
4787--4870	39	2.2	39	86	0	114	19	28	20	32	1.96
4815--4949	39	3.5	39	82	3	155	22	27	20	29	1.98
5325--5359	2	17.5	2	100	0	70	48	0	0	51	1.00
5861--5900	21	2.0	20	90	5	62	50	2	5	42	1.37
5862--5913	21	2.5	20	84	6	59	53	3	3	38	1.37
6675--6701	6	4.5	6	100	0	54	62	0	0	37	0.95
7132--7188	8	7.1	8	78	11	55	50	1	1	45	1.22
9561--9593	11	3.2	11	91	8	52	24	9	15	51	1.72
23576--23631	11	4.8	11	82	10	58	25	0	3	71	1.02
23567--23631	23	2.7	24	85	9	87	27	1	3	67	1.14
23890--23949	13	4.8	13	78	15	72	71	1	0	26	0.95
23886--23929	21	2.1	21	91	0	70	77	0	0	22	0.77
23886--23945	16	3.9	16	76	12	54	73	1	0	25	0.93
23886--23937	21	2.5	21	87	0	68	75	1	0	23	0.91
23895--23949	16	2.9	20	71	23	64	70	1	0	27	0.97
31849--31912	23	2.8	23	85	0	74	28	15	15	40	1.88
33018--33069	24	2.2	24	82	0	59	50	17	11	21	1.77
33038--33150	24	4.7	24	88	6	149	39	19	17	23	1.92
37741--37792	24	2.2	24	82	0	59	50	17	11	21	1.77
37757--37875	24	5.0	24	79	14	113	42	17	15	24	1.89
37764--37875	47	2.4	47	83	7	138	41	17	16	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40415--40469	13	4.2	13	85	0	74	21	21	40	16	1.91
53158--53481	45	7.2	45	88	1	452	22	21	12	42	1.86
56977--57028	24	2.2	24	82	0	59	30	19	21	28	1.97
58301--58353	23	2.2	24	86	3	72	9	16	9	64	1.49
65854--66135	45	6.3	45	91	2	442	21	21	12	44	1.85
65854--66130	134	2.1	136	93	1	468	22	22	11	44	1.85
65854--66134	89	3.1	87	91	5	445	22	21	12	44	1.85
68527--68832	44	7.0	44	87	1	393	26	21	12	40	1.88

Tables:   1

The End!