genome.fa.s1107.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001107.1 Hibiscus syriacus cultivar Beakdansim tig00002189_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73316

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5866--5987	16	6.9	16	69	22	68	71	1	9	17	1.21
6091--6128	18	2.1	18	85	9	51	73	0	7	18	1.06
6257--6303	2	23.0	2	91	4	76	48	0	4	46	1.21
8655--8975	65	4.8	66	75	10	247	40	11	18	29	1.85
8790--9011	36	6.3	36	79	10	226	42	13	18	26	1.87
8818--8850	15	2.1	16	88	5	50	39	9	21	30	1.84
8732--8995	138	1.9	138	88	0	402	42	12	18	26	1.86
8820--9077	101	2.5	101	85	2	320	41	12	17	29	1.86
8962--9144	66	2.8	66	94	0	305	35	10	20	33	1.87
9084--9158	37	2.0	38	84	2	98	34	13	21	30	1.92
10627--10764	69	2.0	69	92	2	233	24	15	23	36	1.93
10839--10892	26	2.1	26	90	10	85	1	14	3	79	0.95
10839--10892	25	2.1	24	90	10	81	1	14	3	79	0.95
10843--10894	13	4.2	12	81	18	70	1	15	1	80	0.88
10838--10897	27	2.3	27	85	8	88	1	13	5	80	0.96
12095--12135	7	5.7	7	94	5	73	56	14	14	14	1.69
12843--12883	16	2.4	18	80	19	52	70	2	14	12	1.26
13972--14044	28	2.7	26	75	24	71	78	4	4	13	1.05
14088--14126	20	2.0	20	89	0	60	79	0	7	12	0.93
14244--14326	40	2.0	40	80	17	91	66	2	4	26	1.24
14314--14354	2	20.5	2	100	0	82	51	0	0	48	1.00
14413--14474	8	8.4	8	85	10	53	53	6	1	38	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14420--14476	2	31.0	2	75	16	52	54	3	1	40	1.28
14443--14491	25	2.0	25	95	0	89	63	0	2	34	1.06
14437--14505	25	2.9	24	85	8	88	65	0	1	33	1.02
14427--14500	14	5.1	14	77	18	71	60	1	1	36	1.13
14443--14526	20	4.0	20	75	17	64	66	0	3	29	1.08
14468--14525	23	2.7	21	84	10	64	70	0	3	25	1.03
17141--17287	64	2.3	65	84	4	181	33	17	21	27	1.96
18204--18234	2	15.5	2	100	0	62	51	0	0	48	1.00
18704--18781	39	2.0	39	100	0	156	23	20	30	25	1.98
18707--18772	18	3.5	18	81	18	89	21	19	31	27	1.97
19035--19088	18	3.0	18	75	0	63	40	3	20	35	1.70
19035--19109	36	2.1	36	87	5	107	37	2	22	37	1.69
23628--23665	18	2.1	18	85	9	51	36	0	18	44	1.50
23988--24022	18	1.9	18	88	0	52	22	20	34	22	1.97
24269--24335	18	3.7	18	79	0	80	41	4	22	31	1.73
24271--24349	36	2.2	36	90	4	124	37	2	22	36	1.68
26929--27008	35	2.3	35	88	0	124	45	12	3	38	1.60
28064--28108	14	3.2	14	93	6	74	0	35	0	64	0.94
28066--28109	7	6.1	8	78	21	53	0	34	0	65	0.93
28054--28109	14	4.3	13	84	13	71	0	30	1	67	1.01
28063--28120	26	2.2	26	85	11	75	3	31	0	65	1.09
28063--28118	28	2.0	28	83	10	71	3	30	0	66	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35662--35696	18	1.9	18	88	0	52	28	17	0	54	1.43
36848--36929	19	4.6	19	81	15	104	17	35	29	18	1.93
36872--36937	14	4.4	14	76	14	69	18	36	28	16	1.93
40681--40715	18	1.9	18	88	0	52	28	17	0	54	1.43
41890--41956	14	4.4	14	77	17	71	19	35	28	16	1.93
41867--41948	19	4.6	19	82	15	113	18	35	29	17	1.93
41872--41956	33	2.6	33	92	0	143	20	35	28	16	1.94
43148--43268	27	4.6	27	76	8	106	63	2	14	19	1.41
43178--43276	26	3.8	25	75	10	74	65	2	13	19	1.35
45489--45528	21	1.9	21	89	0	62	55	7	7	30	1.56
47305--47345	20	2.0	20	90	0	64	19	36	26	17	1.94
51157--51181	10	2.5	10	100	0	50	20	8	20	52	1.71
52495--52988	55	9.0	55	87	1	634	34	11	19	34	1.87
52495--52984	165	3.0	165	88	2	700	34	11	19	34	1.87
57625--57675	2	25.5	2	100	0	102	50	0	0	49	1.00
58108--58170	23	2.7	23	92	0	108	34	25	23	15	1.95
58821--58865	19	2.4	18	81	3	54	44	11	0	44	1.39
59384--59443	31	1.9	31	89	0	93	40	5	10	45	1.60
59909--60041	24	5.1	28	81	13	151	57	1	0	41	1.08
59915--59994	26	3.2	24	65	25	65	56	2	0	41	1.13
59909--60041	52	2.6	52	93	3	225	57	1	0	41	1.08
60014--60063	6	8.5	6	78	8	50	66	2	0	32	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63788--63812	2	12.5	2	100	0	50	52	48	0	0	1.00
64260--64321	23	2.7	23	82	0	79	37	25	22	14	1.92

Tables:   1

The End!