genome.fa.s1108.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001108.1 Hibiscus syriacus cultivar Beakdansim tig00002190_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65125

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3227--3311	36	2.3	37	89	2	136	40	22	16	21	1.91
5604--5805	57	3.5	57	88	2	291	33	18	11	36	1.87
6230--6280	20	2.5	21	84	6	61	21	25	13	39	1.90
8911--8996	42	2.0	42	100	0	172	41	13	6	37	1.72
9673--9721	24	2.0	24	96	0	89	40	12	14	32	1.83
12324--12358	18	1.9	18	94	0	61	51	14	0	34	1.42
16296--16333	20	2.0	19	90	10	60	18	21	10	50	1.76
16303--16340	20	1.9	20	88	0	58	21	23	10	44	1.83
18688--18726	14	2.8	14	84	0	51	35	28	12	23	1.91
23465--23506	21	2.1	20	82	8	50	11	7	19	61	1.52
30311--30490	96	1.9	96	82	2	227	40	14	13	31	1.85
31384--31426	23	1.9	22	85	4	59	30	25	18	25	1.98
34266--34307	22	1.9	22	90	0	66	35	42	2	19	1.64
42502--42569	12	5.7	12	70	16	52	41	1	1	55	1.18
42499--42585	24	3.6	23	75	13	68	43	1	1	54	1.15
42564--42608	2	22.5	2	95	0	81	48	0	0	51	1.00
45618--45996	186	2.0	185	92	2	636	46	9	3	40	1.54
51039--51136	2	49.0	2	74	18	80	48	1	5	44	1.31
51099--51148	23	2.2	23	85	7	66	52	0	6	42	1.26
51039--51143	29	3.6	30	75	16	96	49	0	5	43	1.32
51039--51136	44	2.3	43	81	8	121	48	1	5	44	1.31
51165--51200	16	2.4	16	90	9	58	50	0	11	38	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51415--51466	20	2.6	20	90	0	77	32	19	19	28	1.96
51561--51697	45	3.0	45	92	4	224	43	18	13	24	1.87
52800--53278	87	5.5	86	85	5	574	35	22	22	19	1.96
52800--53278	43	11.0	43	86	2	602	35	22	22	19	1.96
55196--55237	19	2.2	20	83	12	52	71	7	9	11	1.31
60594--60634	19	2.2	19	95	0	73	43	17	19	19	1.88

Tables:   1

The End!