Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001109.1 Hibiscus syriacus cultivar Beakdansim tig00002191_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50839

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2094--2142
20
2.4
21
82
6
64
42
24
0
32
1.55
3364--3396
2
16.5
2
87
12
50
48
3
0
48
1.17
3364--3420
12
4.8
12
74
8
53
47
10
0
42
1.38
3695--3760
29
2.2
32
83
8
84
39
0
1
59
1.07
4577--4917
122
2.8
123
79
9
381
38
16
11
33
1.85
5930--6715
392
2.0
393
94
2
1375
29
22
13
34
1.92
7084--7130
15
3.1
15
81
6
51
59
6
2
31
1.34
7104--7137
3
11.3
3
87
0
50
61
2
2
32
1.26
7690--7872
26
7.8
25
68
20
103
21
21
12
44
1.84
7691--7827
72
1.9
72
87
3
204
20
22
11
45
1.83
7742--7955
46
4.6
46
82
9
279
21
20
12
46
1.83
7863--7898
9
4.1
9
85
7
56
13
33
11
41
1.80
7742--7955
96
2.3
92
85
6
279
21
20
12
46
1.83
9567--9887
135
2.4
135
84
1
385
29
16
23
30
1.96
11099--11169
28
2.4
29
79
13
83
8
15
0
76
1.02
11140--11185
6
6.7
7
83
16
53
8
15
0
76
1.02
11110--11185
28
2.7
27
85
6
89
6
17
0
76
0.99
11132--11194
15
4.3
15
76
8
58
11
14
0
74
1.07
22019--22376
131
2.7
131
81
3
434
37
17
10
34
1.83
25519--25562
18
2.5
18
92
3
72
25
4
0
70
1.06
25605--25655
16
3.2
16
73
15
52
25
3
0
70
1.04
25844--25938
32
2.9
33
70
22
85
22
7
1
69
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25843--25939
33
3.0
33
69
15
85
22
7
1
69
1.20
26005--26038
12
2.8
12
100
0
68
38
0
0
61
0.96
28204--28275
24
3.0
24
85
0
99
50
16
13
19
1.79
28216--28275
12
5.0
12
74
8
59
48
16
16
18
1.82
32876--32945
12
5.8
12
76
6
70
50
18
15
15
1.79
32874--32945
24
3.0
24
89
0
117
50
18
15
16
1.79
32874--32964
24
3.8
24
85
2
112
49
16
16
17
1.80
32874--32978
48
2.2
48
84
6
133
47
17
17
18
1.83
35435--35469
15
2.3
15
95
0
61
37
22
28
11
1.89
35462--35499
18
2.1
18
90
0
58
10
21
44
23
1.83
41544--41598
27
1.9
29
82
10
69
41
1
10
45
1.50
42740--42783
19
2.4
18
88
3
61
20
6
0
72
1.07
42990--43019
16
1.9
15
93
6
51
10
0
3
86
0.67
42984--43061
41
2.0
38
92
7
129
11
12
2
73
1.21
43032--43091
16
4.1
15
72
14
54
21
1
1
75
0.99
43054--43113
30
2.0
31
83
9
79
26
5
1
66
1.21
43126--43163
14
2.6
15
83
4
51
28
2
0
68
1.03
44796--44850
27
2.0
27
89
6
85
41
21
14
21
1.89

Tables:   1

The End!