genome.fa.s111.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000111.1 Hibiscus syriacus cultivar Beakdansim tig00000200_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62761

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384--553	70	2.4	72	90	5	256	27	20	21	30	1.98
722--1038	122	2.6	123	85	5	405	40	13	20	25	1.89
959--1310	137	2.6	138	81	5	410	41	13	17	27	1.86
2643--2710	2	37.0	2	83	16	94	51	0	0	48	1.00
2907--2947	18	2.3	19	84	16	52	43	4	0	51	1.23
12507--12874	129	2.8	132	85	2	485	41	16	9	32	1.80
13857--13924	20	3.5	20	82	6	77	32	17	11	38	1.86
16151--16212	18	3.4	18	93	0	106	19	17	32	30	1.95
18520--18568	23	2.1	23	85	7	64	57	12	2	28	1.46
21840--21900	20	3.0	20	76	6	70	67	0	19	13	1.23
26117--26159	21	2.0	21	100	0	86	18	18	27	34	1.95
27039--27069	11	2.8	11	95	0	53	64	9	9	16	1.48
27550--27598	23	2.1	23	85	7	64	57	12	2	28	1.46
29003--29040	13	3.0	13	88	3	60	44	7	13	34	1.72
29536--29622	44	2.0	44	88	4	131	31	17	18	33	1.94
31234--31289	26	2.2	26	96	0	103	46	3	19	30	1.67
32575--32645	23	3.2	23	70	11	67	28	21	18	32	1.96
32551--32650	44	2.3	44	89	3	148	31	22	17	30	1.96
32635--32672	20	1.9	20	88	0	58	21	26	21	31	1.98
33088--33136	17	2.6	19	70	26	50	26	0	10	63	1.26
36279--36328	19	2.6	19	93	0	91	32	22	22	24	1.98
46333--46387	5	10.8	5	78	21	53	0	20	1	78	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46340--46387	8	5.9	8	88	11	71	0	20	2	77	0.88
48730--49115	111	3.5	109	79	8	366	41	14	9	33	1.79
49364--49411	14	3.5	13	78	13	51	22	0	0	77	0.78
53315--53367	20	2.7	19	88	5	79	32	18	13	35	1.90
53580--53624	21	2.3	19	85	11	63	55	4	13	26	1.57
57019--57085	30	2.2	30	83	0	89	55	20	10	13	1.67
60830--60880	25	2.0	25	96	0	93	19	9	15	54	1.68

Tables:   1

The End!