genome.fa.s1110.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001110.1 Hibiscus syriacus cultivar Beakdansim tig00002192_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85532

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
851--910	12	5.0	12	72	8	59	50	18	13	18	1.78
846--933	24	3.7	24	79	0	95	48	17	13	20	1.80
844--947	24	4.3	24	70	11	63	50	16	14	19	1.79
837--930	48	2.0	48	86	0	134	50	14	13	21	1.78
1594--1630	18	2.1	18	85	14	51	35	13	5	45	1.66
1748--1813	34	1.9	35	90	3	107	24	21	12	42	1.86
2445--2511	31	2.2	31	83	5	82	19	25	37	17	1.94
2471--2510	18	2.2	18	95	0	71	15	22	42	20	1.88
2463--2492	13	2.3	13	94	0	51	16	23	43	16	1.87
5270--5304	16	2.2	16	100	0	70	34	40	11	14	1.82
6128--6159	16	1.9	17	93	6	57	6	18	59	15	1.57
6178--6232	24	2.3	24	90	0	83	12	34	36	16	1.87
9111--9207	29	3.3	29	78	7	106	34	4	17	44	1.68
14587--14652	19	3.4	19	72	12	71	36	7	18	37	1.79
20670--20708	20	2.0	20	94	0	69	58	15	20	5	1.55
21077--21119	12	3.6	12	74	0	50	20	18	25	34	1.96
21038--21117	24	3.4	24	87	1	108	22	11	23	42	1.86
26923--26953	16	1.9	16	93	0	53	32	6	25	35	1.82
31521--31554	18	1.9	18	88	5	52	35	17	20	26	1.95
31805--31846	20	2.1	20	100	0	84	33	23	26	16	1.96
31845--31885	20	2.0	20	85	4	55	24	21	31	21	1.98
32263--32388	45	2.8	45	80	4	146	30	23	7	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32492--32653	40	4.1	40	95	0	297	32	26	17	24	1.97
38866--38905	20	2.0	20	95	0	71	37	25	22	15	1.93
39565--39726	40	4.1	40	95	0	297	32	26	17	24	1.97
45937--45976	20	2.0	20	95	0	71	37	25	22	15	1.93
46636--46717	40	2.0	40	100	0	164	32	26	17	23	1.96
54143--54191	24	2.0	24	84	0	62	28	0	14	57	1.38
54687--54729	18	2.4	18	92	0	68	20	6	0	72	1.08
54798--54827	15	1.9	16	93	6	53	13	6	3	76	1.11
55619--55660	17	2.5	17	96	0	75	23	19	14	42	1.87
58556--58595	15	2.7	15	92	3	64	77	7	10	5	1.11
59621--59705	32	2.7	32	79	0	89	28	12	23	35	1.92
61700--61742	18	2.4	18	88	0	59	20	9	0	69	1.15
61812--61841	15	1.9	16	93	6	53	13	6	3	76	1.11
61848--61888	19	2.2	18	86	4	55	9	7	2	80	0.99
61853--61896	19	2.2	20	80	8	54	15	9	2	72	1.19
66876--66983	56	1.9	56	90	0	171	27	25	21	25	1.99
66932--67338	215	1.9	215	85	3	568	33	18	15	32	1.92
67360--67455	42	2.3	41	80	3	111	31	23	20	23	1.98
67148--67519	181	2.0	182	91	1	613	33	19	15	31	1.94
67340--67797	214	2.1	214	93	2	776	30	20	16	32	1.95
67616--67993	170	2.2	173	88	4	543	32	19	13	34	1.91
67784--68366	206	2.8	208	82	9	659	33	19	13	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68386--68761	34	10.9	34	83	4	441	22	21	22	34	1.97
68386--68761	104	3.6	105	88	3	539	22	21	22	34	1.97
70939--70974	13	2.8	13	86	0	54	0	22	0	77	0.76
70930--70974	22	2.0	22	87	8	65	4	20	0	75	0.97
70939--70991	18	2.8	18	78	18	54	3	24	0	71	1.02
81881--82328	241	1.9	240	82	5	575	28	16	19	36	1.93

Tables:   1

The End!