Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001111.1 Hibiscus syriacus cultivar Beakdansim tig00002193_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3891333
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 13 of 17
Found at i:2811179 original size:141 final size:141
Alignment explanation
Indices: 2810925--2811201 Score: 518
Period size: 141 Copynumber: 2.0 Consensus size: 141
2810915 TTTTTTCTAC
2810925 AAAGTCCATACAAAGAATATTATTCATGTAACCAGTAATAATAGGCTCAATGGCATTAAGAATAG
1 AAAGTCCATACAAAGAATATTATTCATGTAACCAGTAATAATAGGCTCAATGGCATTAAGAATAG
2810990 ACTCATCAAGATCAAGATTAGAAGAGACAAATAATTTCAAAATGTAATTAACAATAATATTCATA
66 ACTCATCAAGATCAAGATTAGAAGAGACAAATAATTTCAAAATGTAATTAACAATAATATTCATA
2811055 ATATCAGTAGT
131 ATATCAGTAGT
*
2811066 AAAGTCCATACAAATAATATTATTCATGTAACCAGTAATAATAGGCTCAATGGCATTAAGAATAG
1 AAAGTCCATACAAAGAATATTATTCATGTAACCAGTAATAATAGGCTCAATGGCATTAAGAATAG
* * *
2811131 ACTCATCAAGATTAGGATTAGAAGAGGCAAATAATTTCAAAATGTAATTAACAATAATATTCATA
66 ACTCATCAAGATCAAGATTAGAAGAGACAAATAATTTCAAAATGTAATTAACAATAATATTCATA
2811196 ATATCA
131 ATATCA
2811202 TGTTTACCAT
Statistics
Matches: 132, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
141 132 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.28
Consensus pattern (141 bp):
AAAGTCCATACAAAGAATATTATTCATGTAACCAGTAATAATAGGCTCAATGGCATTAAGAATAG
ACTCATCAAGATCAAGATTAGAAGAGACAAATAATTTCAAAATGTAATTAACAATAATATTCATA
ATATCAGTAGT
Found at i:2812225 original size:17 final size:18
Alignment explanation
Indices: 2812193--2812230 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
2812183 AACAATTGTC
2812193 CATATTAAGCTTACTACA
1 CATATTAAGCTTACTACA
* *
2812211 CATATT-AGTTTACTATA
1 CATATTAAGCTTACTACA
2812228 CAT
1 CAT
2812231 TAAAGTGTCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.37, C:0.18, G:0.05, T:0.39
Consensus pattern (18 bp):
CATATTAAGCTTACTACA
Found at i:2820259 original size:13 final size:14
Alignment explanation
Indices: 2820241--2820282 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
2820231 GGCTATTATC
2820241 TATTGTTTATGGT-
1 TATTGTTTATGGTA
*
2820254 TATTGTCTATGGTA
1 TATTGTTTATGGTA
*
2820268 CATTG-TTATGGTA
1 TATTGTTTATGGTA
2820281 TA
1 TA
2820283 ATGGCAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 20 0.83
14 4 0.17
ACGTcount: A:0.21, C:0.05, G:0.21, T:0.52
Consensus pattern (14 bp):
TATTGTTTATGGTA
Found at i:2820344 original size:44 final size:44
Alignment explanation
Indices: 2820273--2820455 Score: 260
Period size: 44 Copynumber: 4.1 Consensus size: 44
2820263 TGGTACATTG
*
2820273 TTATGG-TATAATGGCAAATATATTGGTAAAATAAGCTTACGAGC
1 TTATGGAT-TAATGGCAAGTATATTGGTAAAATAAGCTTACGAGC
* *
2820317 TTATGGATTAATGGGAAGTATAATGGTAAAATAAGCTTACGAGC
1 TTATGGATTAATGGCAAGTATATTGGTAAAATAAGCTTACGAGC
* * *
2820361 TTATGGATAAATGGCAAGAACATTGGTAAAATAAGCTTACGAGC
1 TTATGGATTAATGGCAAGTATATTGGTAAAATAAGCTTACGAGC
* * *
2820405 TTATAGGATTAATGGTAAGTATTTTGGTAAAATAAGCTTATGAGC
1 TTAT-GGATTAATGGCAAGTATATTGGTAAAATAAGCTTACGAGC
2820450 TTATGG
1 TTATGG
2820456 TAAAAAATGG
Statistics
Matches: 123, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
44 84 0.68
45 39 0.32
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.32
Consensus pattern (44 bp):
TTATGGATTAATGGCAAGTATATTGGTAAAATAAGCTTACGAGC
Found at i:2820836 original size:22 final size:22
Alignment explanation
Indices: 2820801--2820866 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
2820791 ATTTTCGGAA
* *
2820801 GTACTGAAGTAGTTACTGTAGC
1 GTACTGTAGCAGTTACTGTAGC
* * *
2820823 TTACTGTAGCAGTTATTATAGC
1 GTACTGTAGCAGTTACTGTAGC
* *
2820845 GTACTGTAGCAATTAGTGTAGC
1 GTACTGTAGCAGTTACTGTAGC
2820867 AGTGAATAGT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (22 bp):
GTACTGTAGCAGTTACTGTAGC
Found at i:2825904 original size:14 final size:15
Alignment explanation
Indices: 2825875--2825905 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
2825865 TACAAATTTT
2825875 AATTAAAAATATATA
1 AATTAAAAATATATA
2825890 AATTAAAAATA-ATA
1 AATTAAAAATATATA
2825904 AA
1 AA
2825906 AAGTTATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AATTAAAAATATATA
Found at i:2828825 original size:23 final size:23
Alignment explanation
Indices: 2828799--2828848 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
2828789 AAAGAATTCA
*
2828799 AGAAAGATTCATGGATTATAGTT
1 AGAAAGATTCATGGAATATAGTT
2828822 AGAAAGATTCATGGAATATAGTT
1 AGAAAGATTCATGGAATATAGTT
2828845 AGAA
1 AGAA
2828849 TTCATCAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.44, C:0.04, G:0.22, T:0.30
Consensus pattern (23 bp):
AGAAAGATTCATGGAATATAGTT
Found at i:2829668 original size:37 final size:37
Alignment explanation
Indices: 2829601--2829842 Score: 326
Period size: 38 Copynumber: 6.4 Consensus size: 37
2829591 ATATACATAT
2829601 TTTTGAAAACA-TTTTGAAAATATATATAATATATAG
1 TTTTGAAAACATTTTTGAAAATATATATAATATATAG
* *
2829637 TTTTGAAAACATTTTTAAAAATATATGTAATATATAG
1 TTTTGAAAACATTTTTGAAAATATATATAATATATAG
* *
2829674 TTTTGAAAACATTTTTTTGAAAATATATATAGTATAGAG
1 TTTTGAAAACA--TTTTTGAAAATATATATAATATATAG
2829713 TTTTGAAAACATTTTTTGAAAATATATATAATATATAG
1 TTTTGAAAACA-TTTTTGAAAATATATATAATATATAG
2829751 TTTTGAAAAACATTTTTGAAAATATATATAATATATAG
1 TTTTG-AAAACATTTTTGAAAATATATATAATATATAG
* * * *
2829789 TTTGGAAAACATTTTTCGAATATATA-ATATATAGTTTGG
1 TTTTGAAAACATTTTT-GAAAATATATATA-ATA-TATAG
*
2829828 TTTTGAAAACGTTTT
1 TTTTGAAAACATTTT
2829843 ATAGTATACT
Statistics
Matches: 185, Mismatches: 14, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
36 11 0.06
37 48 0.26
38 71 0.38
39 55 0.30
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.44
Consensus pattern (37 bp):
TTTTGAAAACATTTTTGAAAATATATATAATATATAG
Found at i:2831485 original size:55 final size:55
Alignment explanation
Indices: 2831411--2831516 Score: 178
Period size: 55 Copynumber: 1.9 Consensus size: 55
2831401 TGATTACCAA
2831411 ATGACACTTTGGGTACAAAACTAAGAAATTCATAATAAG-TTTATGAATTTTCGT
1 ATGACACTTTGGGTACAAAACTAAGAAATTCATAATAAGTTTTATGAATTTTCGT
* *
2831465 ATGAGCACTTTGTGTTCAAAACTAAGAAATTCATAATAAGTTTTATGAATTT
1 ATGA-CACTTTGGGTACAAAACTAAGAAATTCATAATAAGTTTTATGAATTT
2831517 CTGTATTGGC
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
54 4 0.08
55 33 0.69
56 11 0.23
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (55 bp):
ATGACACTTTGGGTACAAAACTAAGAAATTCATAATAAGTTTTATGAATTTTCGT
Found at i:2831551 original size:55 final size:55
Alignment explanation
Indices: 2831428--2831561 Score: 150
Period size: 55 Copynumber: 2.4 Consensus size: 55
2831418 TTTGGGTACA
* **
2831428 AAACTAAGAAATTCATAATAAG-TTTATGAATTTTCGTATGAGCACTTTGTGTTC
1 AAACTAAGAAATTCATAATAAGTTTTATGAATTTTCGTATGAGCACTGTGTGAGC
2831482 AAAACTAAGAAATTCATAATAAGTTTTATGAA-TTTCTGTATTG-GCACTGTGTGAGC
1 -AAACTAAGAAATTCATAATAAGTTTTATGAATTTTC-GTA-TGAGCACTGTGTGAGC
* * *
2831538 -AACTCACGTAATTCATAGTAAGTT
1 AAACT-AAGAAATTCATAATAAGTT
2831562 GTGGATTACC
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
54 4 0.06
55 42 0.61
56 21 0.30
57 2 0.03
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.37
Consensus pattern (55 bp):
AAACTAAGAAATTCATAATAAGTTTTATGAATTTTCGTATGAGCACTGTGTGAGC
Found at i:2831820 original size:45 final size:45
Alignment explanation
Indices: 2831765--2832166 Score: 590
Period size: 45 Copynumber: 8.9 Consensus size: 45
2831755 ACTAAAAGCG
*
2831765 TAACGGTGCATTAAAGGCATGAAATGATGCCATAAATGAAATGCA
1 TAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCA
* * *
2831810 TAACGATGCATTAAAGGTATGAAAGGATGCCATAAATGAAATTCA
1 TAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCA
* *
2831855 T-ACAGTGCATTGAAGGCATGAAAGGATGCCATAAATGAAATGCA
1 TAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCA
* ** *
2831899 TAACGGTGTATTAAAGGCATGAAAGGACACCATAAATAAAATGCA
1 TAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCA
* *
2831944 TAACGATACATTAAAGGCATGAAAGGATGCCATAAATGAAATGCA
1 TAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCA
* * *
2831989 TAATGGTGCATTAAAGACATGAAAGGATGACATAAATGAAATGCA
1 TAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCA
* **
2832034 TAACGGTGTATTAAAGGCATGAAAGGATTACATAAATGAAATGCA
1 TAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCA
2832079 TAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCA
1 TAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCA
** * *
2832124 TAATAGTACATTAAAGGTATGAAAGGATGCCATAAATGGAAAT
1 TAACGGTGCATTAAAGGCATGAAAGGATGCCATAAAT-GAAAT
2832167 AATGAATAAT
Statistics
Matches: 318, Mismatches: 37, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
44 39 0.12
45 274 0.86
46 5 0.02
ACGTcount: A:0.45, C:0.11, G:0.22, T:0.22
Consensus pattern (45 bp):
TAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATGCA
Found at i:2831845 original size:21 final size:21
Alignment explanation
Indices: 2831776--2831845 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
2831766 AACGGTGCAT
* *
2831776 TAAAGGCATGAAATGATGCCA
1 TAAAGGAATGAAACGATGCCA
*
2831797 TAAATGAAATGCATAACGATG-CA
1 TAAA-GGAATG-A-AACGATGCCA
* *
2831820 TTAAAGGTATGAAAGGATGCCA
1 -TAAAGGAATGAAACGATGCCA
2831842 TAAA
1 TAAA
2831846 TGAAATTCAT
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
21 14 0.37
22 7 0.18
23 7 0.18
24 10 0.26
ACGTcount: A:0.46, C:0.11, G:0.21, T:0.21
Consensus pattern (21 bp):
TAAAGGAATGAAACGATGCCA
Found at i:2833656 original size:21 final size:21
Alignment explanation
Indices: 2833632--2833671 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
2833622 TTTTATTCAT
*
2833632 TTTAATTTAACTTCTATTTAA
1 TTTAAATTAACTTCTATTTAA
* *
2833653 TTTAAATTAATTTTTATTT
1 TTTAAATTAACTTCTATTT
2833672 GTTTTATTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTAAATTAACTTCTATTTAA
Found at i:2840460 original size:44 final size:44
Alignment explanation
Indices: 2840397--2840518 Score: 192
Period size: 44 Copynumber: 2.8 Consensus size: 44
2840387 AGCATTTTTT
* *
2840397 TACTTCATTTCA-TCTTCTTTTGAATTTATTTTTCTTTCAGTTTG
1 TACTTCGTTTCATTC-TCTTTTGAATTTAATTTTCTTTCAGTTTG
*
2840441 TACTTCGTTTCATTCTCTTTTGAATTTAATTTTCTTTCATTTTG
1 TACTTCGTTTCATTCTCTTTTGAATTTAATTTTCTTTCAGTTTG
*
2840485 TACATCGTTTCATTCTCTTTTGAATTTAATTTTC
1 TACTTCGTTTCATTCTCTTTTGAATTTAATTTTC
2840519 GGTCATTCCG
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
44 71 0.97
45 2 0.03
ACGTcount: A:0.17, C:0.16, G:0.07, T:0.60
Consensus pattern (44 bp):
TACTTCGTTTCATTCTCTTTTGAATTTAATTTTCTTTCAGTTTG
Found at i:2840462 original size:22 final size:22
Alignment explanation
Indices: 2840437--2840506 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
2840427 TTTCTTTCAG
2840437 TTTGTACTTCGTTTCATTCTCT
1 TTTGTACTTCGTTTCATTCTCT
* * **
2840459 TTTGAATTTAATTTTC-TT-TCAT
1 TTTGTACTT-CGTTTCATTCTC-T
*
2840481 TTTGTACATCGTTTCATTCTCT
1 TTTGTACTTCGTTTCATTCTCT
2840503 TTTG
1 TTTG
2840507 AATTTAATTT
Statistics
Matches: 35, Mismatches: 9, Indels: 8
0.67 0.17 0.15
Matches are distributed among these distances:
21 6 0.17
22 23 0.66
23 6 0.17
ACGTcount: A:0.14, C:0.17, G:0.09, T:0.60
Consensus pattern (22 bp):
TTTGTACTTCGTTTCATTCTCT
Found at i:2853275 original size:31 final size:35
Alignment explanation
Indices: 2853160--2853313 Score: 186
Period size: 36 Copynumber: 4.6 Consensus size: 35
2853150 TATTTACATT
2853160 TTTTGAAAACA--TTTGAAAATATATATAATATATAG
1 TTTTGAAAACATTTTTG-AAATATATAT-ATATATAG
* *
2853195 TTTTGAAAACATTTTGGAAATATATATAATTTATAG
1 TTTTGAAAACATTTTTGAAATATATAT-ATATATAG
2853231 TTTTGAAAACATTTTTGAAATA-ATATA-ATATAG
1 TTTTGAAAACATTTTTGAAATATATATATATATAG
2853264 -TTTG-AAACATTTTTG-AA-A-ATATATATATAG
1 TTTTGAAAACATTTTTGAAATATATATATATATAG
2853294 TTTTG-AAACA-TTTTGAAATA
1 TTTTGAAAACATTTTTGAAATA
2853314 GTTTTGAAAA
Statistics
Matches: 109, Mismatches: 4, Indels: 15
0.85 0.03 0.12
Matches are distributed among these distances:
29 6 0.06
30 13 0.12
31 22 0.20
32 5 0.05
33 5 0.05
34 1 0.01
35 15 0.14
36 39 0.36
37 3 0.03
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.43
Consensus pattern (35 bp):
TTTTGAAAACATTTTTGAAATATATATATATATAG
Found at i:2853309 original size:10 final size:10
Alignment explanation
Indices: 2853294--2853345 Score: 50
Period size: 10 Copynumber: 4.8 Consensus size: 10
2853284 ATATATATAG
2853294 TTTTGAAACA
1 TTTTGAAACA
*
2853304 TTTTGAAATA
1 TTTTGAAACA
2853314 GTTTTGAAAAAACA
1 -TTTTG---AAACA
*
2853328 TTTTGAAATA
1 TTTTGAAACA
2853338 TTTTGAAA
1 TTTTGAAA
2853346 ATAGTTTTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
10 21 0.60
11 5 0.14
13 5 0.14
14 4 0.11
ACGTcount: A:0.42, C:0.04, G:0.12, T:0.42
Consensus pattern (10 bp):
TTTTGAAACA
Found at i:2853320 original size:11 final size:11
Alignment explanation
Indices: 2853290--2853359 Score: 72
Period size: 11 Copynumber: 6.3 Consensus size: 11
2853280 AAATATATAT
2853290 ATAGTTTTGAA
1 ATAGTTTTGAA
*
2853301 ACA-TTTTGAA
1 ATAGTTTTGAA
2853311 ATAGTTTTGAAA
1 ATAGTTTTG-AA
* *
2853323 AAACATTTTGAA
1 ATA-GTTTTGAA
2853335 ATA-TTTTGAAA
1 ATAGTTTTG-AA
2853346 ATAGTTTTGAA
1 ATAGTTTTGAA
2853357 ATA
1 ATA
2853360 TATAACATAT
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
10 14 0.29
11 17 0.35
12 13 0.27
13 5 0.10
ACGTcount: A:0.43, C:0.03, G:0.13, T:0.41
Consensus pattern (11 bp):
ATAGTTTTGAA
Found at i:2853353 original size:22 final size:23
Alignment explanation
Indices: 2853299--2853360 Score: 90
Period size: 24 Copynumber: 2.7 Consensus size: 23
2853289 TATAGTTTTG
2853299 AAACATTTTGAAATAGTTTTGAAA
1 AAACATTTTGAAATA-TTTTGAAA
2853323 AAACATTTTGAAATATTTTGAAA
1 AAACATTTTGAAATATTTTGAAA
* *
2853346 ATA-GTTTTGAAATAT
1 AAACATTTTGAAATAT
2853361 ATAACATATT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.31
23 10 0.28
24 15 0.42
ACGTcount: A:0.45, C:0.03, G:0.11, T:0.40
Consensus pattern (23 bp):
AAACATTTTGAAATATTTTGAAA
Found at i:2853423 original size:36 final size:34
Alignment explanation
Indices: 2853382--2853457 Score: 91
Period size: 36 Copynumber: 2.2 Consensus size: 34
2853372 TTGAAAAATT
2853382 TATATAATTGAAAAAACATTTTT-GAAATGTATATAA
1 TATATAATTGAAAAAAC-TTTTTCGAAA--TATATAA
* * *
2853418 TATATAGTTGTAAACACTTTTTCGAAATATATAA
1 TATATAATTGAAAAAACTTTTTCGAAATATATAA
2853452 TATATA
1 TATATA
2853458 TTTGGTTTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
34 13 0.36
35 5 0.14
36 18 0.50
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (34 bp):
TATATAATTGAAAAAACTTTTTCGAAATATATAA
Found at i:2869634 original size:1 final size:1
Alignment explanation
Indices: 2869630--2869692 Score: 72
Period size: 1 Copynumber: 63.0 Consensus size: 1
2869620 ATTTTTGAAA
** *** *
2869630 TTTTTTTTTTTTTTTTTTTTTTTCCTTTTTTTTTTTTGCCTTTTTTTTTTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2869693 GAAAAAAAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:0.00, C:0.06, G:0.03, T:0.90
Consensus pattern (1 bp):
T
Found at i:2869648 original size:15 final size:15
Alignment explanation
Indices: 2869630--2869682 Score: 83
Period size: 15 Copynumber: 3.7 Consensus size: 15
2869620 ATTTTTGAAA
2869630 TTTTTTTTTT--TTT
1 TTTTTTTTTTCCTTT
2869643 TTTTTTTTTTCCTTT
1 TTTTTTTTTTCCTTT
*
2869658 TTTTTTTTTGCCTTT
1 TTTTTTTTTTCCTTT
2869673 TTTTTTTTTT
1 TTTTTTTTTT
2869683 TTGTTTTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.28
15 26 0.72
ACGTcount: A:0.00, C:0.08, G:0.02, T:0.91
Consensus pattern (15 bp):
TTTTTTTTTTCCTTT
Found at i:2870077 original size:16 final size:15
Alignment explanation
Indices: 2870039--2870077 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
2870029 TAAGATTAGA
2870039 ATAAATAAACAAAAG
1 ATAAATAAACAAAAG
**
2870054 ATAAATAAACGGAAG
1 ATAAATAAACAAAAG
2870069 ATGAAATAA
1 AT-AAATAA
2870078 GATAATAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.67, C:0.05, G:0.13, T:0.15
Consensus pattern (15 bp):
ATAAATAAACAAAAG
Found at i:2881352 original size:15 final size:15
Alignment explanation
Indices: 2881312--2881345 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
2881302 CTTGAAGAAT
2881312 AAATAAAAAAATGAA
1 AAATAAAAAAATGAA
*
2881327 AAATAAAAAAATGAG
1 AAATAAAAAAATGAA
2881342 AAAT
1 AAAT
2881346 GAGAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (15 bp):
AAATAAAAAAATGAA
Found at i:2881352 original size:23 final size:23
Alignment explanation
Indices: 2881320--2881427 Score: 66
Period size: 23 Copynumber: 4.7 Consensus size: 23
2881310 ATAAATAAAA
2881320 AAATGA-AAAATAAAAAAATGAG
1 AAATGAGAAAATAAAAAAATGAG
* *
2881342 AAATGAGAAAAAAAAGAAAAATGGTG
1 AAATGAG-AAAATAA-AAAAAT-GAG
*
2881368 AAA-GA-AAAAGAAGAAAAA--AG
1 AAATGAGAAAATAA-AAAAATGAG
* * *
2881388 AAAAGAGAAAA-AGAAAAATGAAA
1 AAATGAGAAAATAAAAAAATG-AG
2881411 AAATAGAGAAAATAAAA
1 AAAT-GAGAAAATAAAA
2881428 GGGGGTTCAA
Statistics
Matches: 67, Mismatches: 8, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
20 9 0.13
21 3 0.04
22 10 0.15
23 16 0.24
24 13 0.19
25 11 0.16
26 5 0.07
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (23 bp):
AAATGAGAAAATAAAAAAATGAG
Found at i:2881363 original size:18 final size:19
Alignment explanation
Indices: 2881331--2881379 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
2881321 AATGAAAAAT
* *
2881331 AAAAAAATGAGAAAT-GAG
1 AAAAAAAAGAAAAATGGAG
*
2881349 AAAAAAAAGAAAAATGGTG
1 AAAAAAAAGAAAAATGGAG
2881368 AAAGAAAAAGAA
1 AAA-AAAAAGAA
2881380 GAAAAAAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 13 0.50
19 5 0.19
20 8 0.31
ACGTcount: A:0.71, C:0.00, G:0.20, T:0.08
Consensus pattern (19 bp):
AAAAAAAAGAAAAATGGAG
Found at i:2882894 original size:54 final size:54
Alignment explanation
Indices: 2882751--2883225 Score: 540
Period size: 55 Copynumber: 8.7 Consensus size: 54
2882741 TTTATGAAGA
* *
2882751 TCGAGTCCTATACTCTCTGATAGAATAGGGAGCGGACCC-CTTG-TGAAGATTGT
1 TCGAGTTCTATACTCTCTGA-AGAATAGGGAGCGGACCCGTTTGTTGAAGATTGT
*
2882804 TCGAGTTCTATACTCTCTGATAGAATA-GGAGCGGACCCGTTTGTTGAAGA-TAT
1 TCGAGTTCTATACTCTCTGA-AGAATAGGGAGCGGACCCGTTTGTTGAAGATTGT
* * * *
2882857 TCAAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTT-TATAAAGATTTT
1 TCGAGTTCTATACTCTCTGAA-GAATAGGGAGCGGACCCGTTTGT-TGAAGATTGT
*
2882912 TCGAGTTCTATACTCCCTGAATGAATAGGGA-CGGACCCG-TTGTTGAAGATTGT
1 TCGAGTTCTATACTCTCTGAA-GAATAGGGAGCGGACCCGTTTGTTGAAGATTGT
* *
2882965 TCAAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTGTTGAAGATTGT
1 TCGAGTTCTATACTCTCTGAA-GAATAGGGAGCGGACCCGTTTGTTGAAGATTGT
* *
2883020 TCGAGTTCTATACTCTCTGAAGAATAGAGAGCGGACCCCTTT-TATGAAGATTGT
1 TCGAGTTCTATACTCTCTGAAGAATAGGGAGCGGACCCGTTTGT-TGAAGATTGT
* * **
2883074 TCGAGTTCTATACTCCCTGAAAGAATAGGGAGCGAACTTGTTT-TATGAAGATTGT
1 TCGAGTTCTATACTCTCTG-AAGAATAGGGAGCGGACCCGTTTGT-TGAAGATTGT
* * * * *
2883129 TCGAG-TCTTATACTCCCTGAAATAATAGGGAGCAGACACGTTTATTGAAGATTGTT
1 TCGAGTTC-TATACTCTCTG-AAGAATAGGGAGCGGACCCGTTTGTTGAAGATTG-T
* *
2883185 TCGAG-TCTTATACTCCCTGAAGGAATAGGGAGTGGACCCGT
1 TCGAGTTC-TATACTCTCTGAA-GAATAGGGAGCGGACCCGT
2883226 CATTTGAAGA
Statistics
Matches: 373, Mismatches: 34, Indels: 27
0.86 0.08 0.06
Matches are distributed among these distances:
52 12 0.03
53 94 0.25
54 92 0.25
55 139 0.37
56 36 0.10
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (54 bp):
TCGAGTTCTATACTCTCTGAAGAATAGGGAGCGGACCCGTTTGTTGAAGATTGT
Found at i:2882947 original size:108 final size:110
Alignment explanation
Indices: 2882758--2883225 Score: 559
Period size: 108 Copynumber: 4.3 Consensus size: 110
2882748 AGATCGAGTC
* * *
2882758 CTATACTCTCTGATA-GAATAGGGAGCGGACCC--CTTGTGAAGATTGTTCGAGTTCTATACTCT
1 CTATACTCTCTGA-AGGAATAGGGAGCGGACCCGTTTTATGAAGATTGTTCGAGTTCTATACTCC
*
2882820 CTG-ATAGAATA-GGAGCGGACCCGTTTGTTGAAGA-TATTCAAGTT
65 CTGAAT-GAATAGGGAGCGGACCCGTTTGTTGAAGATTGTTCAAGTT
* * *
2882864 CTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTTATAAAGATTTTTCGAGTTCTATACTCCC
1 CTATACTCTCTGAAGGAATAGGGAGCGGACCCGTTTTATGAAGATTGTTCGAGTTCTATACTCCC
2882929 TGAATGAATAGGGA-CGGACCCG-TTGTTGAAGATTGTTCAAGTT
66 TGAATGAATAGGGAGCGGACCCGTTTGTTGAAGATTGTTCAAGTT
* *
2882972 CTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTGT-TGAAGATTGTTCGAGTTCTATACTCT
1 CTATACTCTCTGAAGGAATAGGGAGCGGACCCGTTT-TATGAAGATTGTTCGAGTTCTATACTCC
* * *
2883036 CTGAA-GAATAGAGAGCGGACCCCTTT-TATGAAGATTGTTCGAGTT
65 CTGAATGAATAGGGAGCGGACCCGTTTGT-TGAAGATTGTTCAAGTT
* * * **
2883081 CTATACTCCCTGAAAGAATAGGGAGCGAACTTGTTTTATGAAGATTGTTCGAG-TCTTATACTCC
1 CTATACTCTCTGAAGGAATAGGGAGCGGACCCGTTTTATGAAGATTGTTCGAGTTC-TATACTCC
* * * *
2883145 CTGAAAT-AATAGGGAGCAGACACGTTTATTGAAGATTGTTTCGAG-T
65 CTG-AATGAATAGGGAGCGGACCCGTTTGTTGAAGATTG-TTCAAGTT
* *
2883191 CTTATACTCCCTGAAGGAATAGGGAGTGGACCCGT
1 C-TATACTCTCTGAAGGAATAGGGAGCGGACCCGT
2883226 CATTTGAAGA
Statistics
Matches: 316, Mismatches: 29, Indels: 29
0.84 0.08 0.08
Matches are distributed among these distances:
105 1 0.00
106 29 0.09
107 18 0.06
108 125 0.40
109 79 0.25
110 29 0.09
111 35 0.11
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.31
Consensus pattern (110 bp):
CTATACTCTCTGAAGGAATAGGGAGCGGACCCGTTTTATGAAGATTGTTCGAGTTCTATACTCCC
TGAATGAATAGGGAGCGGACCCGTTTGTTGAAGATTGTTCAAGTT
Found at i:2895975 original size:18 final size:18
Alignment explanation
Indices: 2895952--2895986 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
2895942 TCTTCGTTTG
* *
2895952 TGTTTTTGGAGTTTTTTT
1 TGTTTTTCGACTTTTTTT
2895970 TGTTTTTCGACTTTTTT
1 TGTTTTTCGACTTTTTT
2895987 CCCCTTTTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.06, G:0.17, T:0.71
Consensus pattern (18 bp):
TGTTTTTCGACTTTTTTT
Found at i:2896846 original size:49 final size:49
Alignment explanation
Indices: 2896790--2896901 Score: 138
Period size: 50 Copynumber: 2.3 Consensus size: 49
2896780 GTAACTATTG
** * * * *
2896790 AATAAAATAATAAAATTAAAGATAATATTTTG-ATTATGTCTTAATTCCT
1 AATAAAATAATAAAAACAAAAATAAT-GTTTGAACTATATCTTAATTCCT
2896839 AATAAAATAATAATAAACAAAAATAATGTTTGAACTATATCTTAATTCCT
1 AATAAAATAATAA-AAACAAAAATAATGTTTGAACTATATCTTAATTCCT
2896889 AAT-AAATAATAAA
1 AATAAAATAATAAA
2896902 TATAATCCTA
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
48 1 0.02
49 26 0.47
50 28 0.51
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (49 bp):
AATAAAATAATAAAAACAAAAATAATGTTTGAACTATATCTTAATTCCT
Found at i:2902001 original size:24 final size:25
Alignment explanation
Indices: 2901877--2901994 Score: 138
Period size: 24 Copynumber: 4.9 Consensus size: 25
2901867 CATAATTCAC
*
2901877 GTCAAGTATCATATCA-AAATCCAA
1 GTCAAGTATCAGATCAGAAATCCAA
*
2901901 GTCAAGTATCAGATCA-AAATCCTA
1 GTCAAGTATCAGATCAGAAATCCAA
* *
2901925 GTCAAGTATCATATCAG-AATCCAT
1 GTCAAGTATCAGATCAGAAATCCAA
* *
2901949 GTC-AGATATCAGATTAG-AATCCAT
1 GTCAAG-TATCAGATCAGAAATCCAA
2901973 GTCAAGTATCAGATCAGAAATC
1 GTCAAGTATCAGATCAGAAATC
2901995 AAATCAAAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
23 2 0.02
24 74 0.90
25 6 0.07
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (25 bp):
GTCAAGTATCAGATCAGAAATCCAA
Found at i:2902008 original size:48 final size:49
Alignment explanation
Indices: 2901853--2902008 Score: 149
Period size: 48 Copynumber: 3.2 Consensus size: 49
2901843 AAACGAATAT
* * * *
2901853 ATCAAAAATCAAATCATAATTCACGTCAAGTATCATATCA-AAATCCAA
1 ATCAAAAATCAGATCAAAATCCATGTCAAGTATCATATCAGAAATCCAA
* ** *
2901901 GTCAAGTATCAGATCAAAATCC-TAGTCAAGTATCATATCAG-AATCCAT
1 ATCAAAAATCAGATCAAAATCCAT-GTCAAGTATCATATCAGAAATCCAA
* * * * * *
2901949 GTCAGATATCAGATTAGAATCCATGTCAAGTATCAGATCAGAAAT-CAA
1 ATCAAAAATCAGATCAAAATCCATGTCAAGTATCATATCAGAAATCCAA
2901997 ATCAAAAATCAG
1 ATCAAAAATCAG
2902009 GTAAAATATT
Statistics
Matches: 87, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
48 83 0.95
49 4 0.05
ACGTcount: A:0.45, C:0.19, G:0.11, T:0.25
Consensus pattern (49 bp):
ATCAAAAATCAGATCAAAATCCATGTCAAGTATCATATCAGAAATCCAA
Found at i:2904409 original size:23 final size:22
Alignment explanation
Indices: 2904379--2904426 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 22
2904369 TGGTCAACGC
2904379 GGTCGGTCAAC-GGTCCGGGTCG
1 GGTCGGTCAACTGGT-CGGGTCG
2904401 GGTCGGGTCAACTGGTCGGGTCG
1 GGTC-GGTCAACTGGTCGGGTCG
2904424 GGT
1 GGT
2904427 TCTGACCGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 4 0.17
23 17 0.71
24 3 0.12
ACGTcount: A:0.08, C:0.23, G:0.48, T:0.21
Consensus pattern (22 bp):
GGTCGGTCAACTGGTCGGGTCG
Found at i:2906495 original size:24 final size:24
Alignment explanation
Indices: 2906468--2906601 Score: 94
Period size: 24 Copynumber: 5.5 Consensus size: 24
2906458 TATATCAAAA
* * *
2906468 ATCAAATCATAATTCACGTCAAGT
1 ATCAAATCAAAATCCAAGTCAAGT
*
2906492 ATCATATCAAAATCCAAGTCAAGT
1 ATCAAATCAAAATCCAAGTCAAGT
* * * *
2906516 ATCAGATTAGAATCCAAGTTAAGT
1 ATCAAATCAAAATCCAAGTCAAGT
* *
2906540 ATCAGAT-AAGAATCCATGTC-AGAT
1 ATCAAATCAA-AATCCAAGTCAAG-T
* *
2906564 ATCAGATCAGAAA-CCATGTCAAGT
1 ATCAAATCA-AAATCCAAGTCAAGT
*
2906588 ATCAGATCAGAAAT
1 ATCAAATCA-AAAT
2906602 GAAATCAAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
23 3 0.03
24 84 0.90
25 5 0.05
26 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.25
Consensus pattern (24 bp):
ATCAAATCAAAATCCAAGTCAAGT
Found at i:2906554 original size:48 final size:48
Alignment explanation
Indices: 2906485--2906599 Score: 135
Period size: 48 Copynumber: 2.4 Consensus size: 48
2906475 CATAATTCAC
* * *
2906485 GTCAAGTATCATATCAA-AATCCAAGTCA-AGTATCAGATTAGAATCCAA
1 GTCAAGTATCAGAT-AAGAATCCAAGTCAGA-TATCAGATCAGAAACCAA
* * *
2906533 GTTAAGTATCAGATAAGAATCCATGTCAGATATCAGATCAGAAACCAT
1 GTCAAGTATCAGATAAGAATCCAAGTCAGATATCAGATCAGAAACCAA
*
2906581 GTCAAGTATCAGATCAGAA
1 GTCAAGTATCAGATAAGAA
2906600 ATGAAATCAA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
47 2 0.04
48 54 0.95
49 1 0.02
ACGTcount: A:0.43, C:0.17, G:0.16, T:0.24
Consensus pattern (48 bp):
GTCAAGTATCAGATAAGAATCCAAGTCAGATATCAGATCAGAAACCAA
Found at i:2909014 original size:13 final size:13
Alignment explanation
Indices: 2908998--2909034 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
2908988 GTCAACGGAT
*
2908998 CGGGTCGGGTCAG
1 CGGGTCGGGTCAA
2909011 CGGGTCGGGTCAA
1 CGGGTCGGGTCAA
*
2909024 CGGGTCAGGTC
1 CGGGTCGGGTC
2909035 GGGTCAGGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.11, C:0.24, G:0.49, T:0.16
Consensus pattern (13 bp):
CGGGTCGGGTCAA
Found at i:2909018 original size:18 final size:18
Alignment explanation
Indices: 2908987--2909040 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
2908977 GCCAGTCAAC
2908987 GGTCAACGGATCGGGTCG
1 GGTCAACGGATCGGGTCG
2909005 GGTC-A--G--CGGGTCG
1 GGTCAACGGATCGGGTCG
* *
2909018 GGTCAACGGGTCAGGTCG
1 GGTCAACGGATCGGGTCG
2909036 GGTCA
1 GGTCA
2909041 GGTTGTGACC
Statistics
Matches: 30, Mismatches: 1, Indels: 10
0.73 0.02 0.24
Matches are distributed among these distances:
13 11 0.37
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 15 0.50
ACGTcount: A:0.15, C:0.22, G:0.46, T:0.17
Consensus pattern (18 bp):
GGTCAACGGATCGGGTCG
Found at i:2911588 original size:16 final size:16
Alignment explanation
Indices: 2911567--2911597 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2911557 TTCGTCGGGC
*
2911567 GAATAACTTTTAGGGT
1 GAATAAATTTTAGGGT
2911583 GAATAAATTTTAGGG
1 GAATAAATTTTAGGG
2911598 CAAATTACTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.35
Consensus pattern (16 bp):
GAATAAATTTTAGGGT
Found at i:2913689 original size:21 final size:21
Alignment explanation
Indices: 2913659--2913813 Score: 133
Period size: 21 Copynumber: 7.4 Consensus size: 21
2913649 GATTTACATA
* *
2913659 TTCGCATTGCGATAGTCCAAG
1 TTCGCGTTGCGATATTCCAAG
*
2913680 TTCGCGTTGCGATTTATTCCATG
1 TTCGCGTTGCGA--TATTCCAAG
*
2913703 TT--CGTTGCGATATTCGAAG
1 TTCGCGTTGCGATATTCCAAG
*
2913722 TTCGCGTTGCGATTTATTCCAAA
1 TTCGCGTTGCGA--TATTCCAAG
*
2913745 TT--CGTTGCGATAGTCCAAG
1 TTCGCGTTGCGATATTCCAAG
2913764 TTCGCGTTGCGATTTATTCCAAG
1 TTCGCGTTGCGA--TATTCCAAG
* * *
2913787 TT--CGTTGTGATAGTCGAAG
1 TTCGCGTTGCGATATTCCAAG
2913806 TTCGCGTT
1 TTCGCGTT
2913814 TTGCGATTTA
Statistics
Matches: 109, Mismatches: 13, Indels: 24
0.75 0.09 0.16
Matches are distributed among these distances:
19 27 0.25
21 54 0.50
23 28 0.26
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (21 bp):
TTCGCGTTGCGATATTCCAAG
Found at i:2913723 original size:42 final size:42
Alignment explanation
Indices: 2913665--2913887 Score: 331
Period size: 42 Copynumber: 5.3 Consensus size: 42
2913655 CATATTCGCA
* **
2913665 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCATGTTCG
1 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
*
2913707 TTGCGATATTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
* *
2913749 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCG
1 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
*
2913791 TTGTGATAGTCGAAGTTCGCGTTTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCGAAGTTCGCG--TTGCGATTTATTCCAAATTCG
* *
2913835 TTGCGATAGTCG-ACTATCGCATTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCGAAGT-TCGCGTTGCGATTTATTCCAAATTCG
2913877 TTGCGATAGTC
1 TTGCGATAGTC
2913888 CAAAATCGCA
Statistics
Matches: 165, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
42 128 0.78
43 2 0.01
44 35 0.21
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (42 bp):
TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
Found at i:2913868 original size:86 final size:84
Alignment explanation
Indices: 2913665--2913887 Score: 340
Period size: 86 Copynumber: 2.6 Consensus size: 84
2913655 CATATTCGCA
* * *
2913665 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCATGTTCGTTGCGATATTCGAAGTTCGCGTT
1 TTGCGATAGTCCAACTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTT
2913730 GCGATTTATTCCAAATTCG
66 GCGATTTATTCCAAATTCG
* *
2913749 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGTGATAGTCGAAGTTCGCGTT
1 TTGCGATAGTCCAACTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCGCG--
2913814 TTGCGATTTATTCCAAATTCG
64 TTGCGATTTATTCCAAATTCG
* * *
2913835 TTGCGATAGT-CGACTATCGCATTGCGATTTATTCCAAATTCGTTGCGATAGTC
1 TTGCGATAGTCCAACT-TCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTC
2913888 CAAAATCGCA
Statistics
Matches: 128, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
84 60 0.47
85 3 0.02
86 65 0.51
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (84 bp):
TTGCGATAGTCCAACTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTT
GCGATTTATTCCAAATTCG
Found at i:2913897 original size:42 final size:42
Alignment explanation
Indices: 2913640--2913890 Score: 303
Period size: 42 Copynumber: 6.0 Consensus size: 42
2913630 AACTTGACTA
*
2913640 TCGCATTGCGATTTA---CATATTCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATTTATTCCAAATTCG--TTGCGATAGTCCAAGT
* ** * *
2913681 TCGCGTTGCGATTTATTCCATGTTCGTTGCGATATTCGAAGT
1 TCGCATTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGT
*
2913723 TCGCGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGT
1 TCGCATTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGT
* * * *
2913765 TCGCGTTGCGATTTATTCCAAGTTCGTTGTGATAGTCGAAGT
1 TCGCATTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGT
* * *
2913807 TCGCGTTTTGCGATTTATTCCAAATTCGTTGCGATAGT-CGACT
1 TCGC--ATTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGT
2913850 ATCGCATTGCGATTTATTCCAAATTCGTTGCGATAGTCCAA
1 -TCGCATTGCGATTTATTCCAAATTCGTTGCGATAGTCCAA
2913891 AATCGCAACG
Statistics
Matches: 184, Mismatches: 19, Indels: 12
0.86 0.09 0.06
Matches are distributed among these distances:
41 14 0.08
42 126 0.68
43 4 0.02
44 40 0.22
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (42 bp):
TCGCATTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGT
Found at i:2913991 original size:6 final size:6
Alignment explanation
Indices: 2913980--2914004 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
2913970 GACACGTATT
2913980 ACCACG ACCACG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG ACCACG A
2914005 GACGAGACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.48, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:2914692 original size:21 final size:21
Alignment explanation
Indices: 2914640--2914846 Score: 253
Period size: 21 Copynumber: 9.9 Consensus size: 21
2914630 CGTTGCGATT
*
2914640 TTGGACTATCGCAA--CGAAT
1 TTGGACTATCGCAATGCGAAC
*
2914659 TTGGAATAAATCGCAATGCGATA-
1 TTGGACT--ATCGCAATGCGA-AC
* *
2914682 GTCGACTATCGCAATGCGAAC
1 TTGGACTATCGCAATGCGAAC
*
2914703 TTAGACTATCGCAATGCGAAC
1 TTGGACTATCGCAATGCGAAC
2914724 TTGGACTATCGCAATGCGAAC
1 TTGGACTATCGCAATGCGAAC
2914745 TTGGACTATCGCAATGCGAA-
1 TTGGACTATCGCAATGCGAAC
* * *
2914765 TATGTA-AATCACAATGCGAAC
1 T-TGGACTATCGCAATGCGAAC
*
2914786 TTGGACTATCGCAACGCGAAC
1 TTGGACTATCGCAATGCGAAC
2914807 TTGGACTATCGCAATGCGAAC
1 TTGGACTATCGCAATGCGAAC
*
2914828 TTGGACTATCGCATTGCGA
1 TTGGACTATCGCAATGCGA
2914847 TTTACATATT
Statistics
Matches: 163, Mismatches: 16, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.04
20 17 0.10
21 132 0.81
23 7 0.04
24 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (21 bp):
TTGGACTATCGCAATGCGAAC
Found at i:2914710 original size:63 final size:62
Alignment explanation
Indices: 2914643--2914840 Score: 199
Period size: 62 Copynumber: 3.2 Consensus size: 62
2914633 TGCGATTTTG
*
2914643 GACTATCGCAA-CGAATTTGGAATAAATCGCAATGCGATA-GTCGACTATCGCAATGCGAACTTA
1 GACTATCGCAAGCGAACTTGGAAT--ATCGCAATGCGA-ACGTCGACTATCGCAATGCGAACTTA
* * *
2914706 GACTATCGCAATGCGAACTTGGACTATCGCAATGCGAACTTGGACTATCGCAATGCGAA--TA
1 GACTATCGCAA-GCGAACTTGGAATATCGCAATGCGAACGTCGACTATCGCAATGCGAACTTA
* * * * * * *
2914767 TGTA-AATCACAATGCGAACTTGGACTATCGCAACGCGAACTTGGACTATCGCAATGCGAACTTG
1 -G-ACTATCGCAA-GCGAACTTGGAATATCGCAATGCGAACGTCGACTATCGCAATGCGAACTTA
2914831 GACTATCGCA
1 GACTATCGCA
2914841 TTGCGATTTA
Statistics
Matches: 117, Mismatches: 10, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
61 2 0.02
62 56 0.48
63 48 0.41
64 1 0.01
65 10 0.09
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (62 bp):
GACTATCGCAAGCGAACTTGGAATATCGCAATGCGAACGTCGACTATCGCAATGCGAACTTA
Found at i:2914864 original size:20 final size:20
Alignment explanation
Indices: 2914836--2915032 Score: 129
Period size: 21 Copynumber: 9.6 Consensus size: 20
2914826 ACTTGGACTA
2914836 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
* * *
2914856 TCACATTGCGATAGTCCA-AGT
1 TCGCATTGCGAT-TTACATA-T
2914877 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
* *
2914897 TCGCATTGCGATAGTCCA-AGT
1 TCGCATTGCGAT-TTACATA-T
*
2914918 TCGCATT--GATATAGTCGACTA-
1 TCGCATTGCGATTTA--C-A-TAT
2914939 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
* *
2914959 TCGCATTGCGATAGTCCA-AGT
1 TCGCATTGCGAT-TTACATA-T
* * * *
2914980 TTGCGTTGCGATAGTCCA-AGT
1 TCGCATTGCGAT-TTACATA-T
2915001 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
2915021 TCGCATTGCGAT
1 TCGCATTGCGAT
2915033 AGTCCAAGTT
Statistics
Matches: 142, Mismatches: 19, Indels: 32
0.74 0.10 0.17
Matches are distributed among these distances:
18 1 0.01
19 5 0.04
20 60 0.42
21 70 0.49
23 6 0.04
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (20 bp):
TCGCATTGCGATTTACATAT
Found at i:2914866 original size:83 final size:83
Alignment explanation
Indices: 2914693--2914846 Score: 281
Period size: 83 Copynumber: 1.9 Consensus size: 83
2914683 TCGACTATCG
*
2914693 CAATGCGAACTTAGACTATCGCAATGCGAACTTGGACTATCGCAATGCGAACTTGGACTATCGCA
1 CAATGCGAACTTAGACTATCGCAACGCGAACTTGGACTATCGCAATGCGAACTTGGACTATCGCA
2914758 ATGCGAATATGTAAATCA
66 ATGCGAATATGTAAATCA
*
2914776 CAATGCGAACTTGGACTATCGCAACGCGAACTTGGACTATCGCAATGCGAACTTGGACTATCGCA
1 CAATGCGAACTTAGACTATCGCAACGCGAACTTGGACTATCGCAATGCGAACTTGGACTATCGCA
*
2914841 TTGCGA
66 ATGCGA
2914847 TTTACATATT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 68 1.00
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.23
Consensus pattern (83 bp):
CAATGCGAACTTAGACTATCGCAACGCGAACTTGGACTATCGCAATGCGAACTTGGACTATCGCA
ATGCGAATATGTAAATCA
Found at i:2914881 original size:41 final size:41
Alignment explanation
Indices: 2914836--2915094 Score: 262
Period size: 41 Copynumber: 6.3 Consensus size: 41
2914826 ACTTGGACTA
*
2914836 TCGCATTGCGATTTACATATTCACATTGCGATAGTCCAAGT
1 TCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGT
2914877 TCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGT
* * *
2914918 TCGCATT--GATATAGTCGACTA-TCGCATTGCGAT-TTACATA-T
1 TCGCATTGCGATTTA--C-A-TATTCGCATTGCGATAGTCCA-AGT
* * * *
2914959 TCGCATTGCGATAGTCCA-AGTTTGCGTTGCGATAGTCCAAGT
1 TCGCATTGCGAT-TTACATA-TTCGCATTGCGATAGTCCAAGT
2915001 TCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGT
* * * * *
2915042 TCGCTTTGCGATAGTCCA-AGTTTGCATTGCGATAGTCGAAGT
1 TCGCATTGCGAT-TTACATA-TTCGCATTGCGATAGTCCAAGT
*
2915084 TCGCGTTGCGA
1 TCGCATTGCGA
2915095 ATCTGGAAAC
Statistics
Matches: 183, Mismatches: 20, Indels: 29
0.79 0.09 0.12
Matches are distributed among these distances:
39 6 0.03
41 106 0.58
42 65 0.36
43 5 0.03
44 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.34
Consensus pattern (41 bp):
TCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGT
Found at i:2914885 original size:21 final size:21
Alignment explanation
Indices: 2914859--2915094 Score: 243
Period size: 21 Copynumber: 11.4 Consensus size: 21
2914849 TACATATTCA
2914859 CATTGCGATAGTCCAAGTTCG
1 CATTGCGATAGTCCAAGTTCG
* *
2914880 CATTGCGAT-TTACATA-TTCG
1 CATTGCGATAGTCCA-AGTTCG
2914900 CATTGCGATAGTCCAAGTTCG
1 CATTGCGATAGTCCAAGTTCG
** * *
2914921 CATTGATATAGT-CGACTATCG
1 CATTGCGATAGTCCAAGT-TCG
* *
2914942 CATTGCGAT-TTACATA-TTCG
1 CATTGCGATAGTCCA-AGTTCG
*
2914962 CATTGCGATAGTCCAAGTTTG
1 CATTGCGATAGTCCAAGTTCG
*
2914983 CGTTGCGATAGTCCAAGTTCG
1 CATTGCGATAGTCCAAGTTCG
* *
2915004 CATTGCGAT-TTACATA-TTCG
1 CATTGCGATAGTCCA-AGTTCG
2915024 CATTGCGATAGTCCAAGTTCG
1 CATTGCGATAGTCCAAGTTCG
* *
2915045 CTTTGCGATAGTCCAAGTTTG
1 CATTGCGATAGTCCAAGTTCG
*
2915066 CATTGCGATAGTCGAAGTTCG
1 CATTGCGATAGTCCAAGTTCG
*
2915087 CGTTGCGA
1 CATTGCGA
2915095 ATCTGGAAAC
Statistics
Matches: 176, Mismatches: 28, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
20 51 0.29
21 124 0.70
22 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.33
Consensus pattern (21 bp):
CATTGCGATAGTCCAAGTTCG
Found at i:2914925 original size:62 final size:62
Alignment explanation
Indices: 2914859--2915074 Score: 344
Period size: 62 Copynumber: 3.5 Consensus size: 62
2914849 TACATATTCA
2914859 CATTGCGATAGTCCAAGTTCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCG
1 CATTGCGATAGTCCAAGTTCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCG
** * * *
2914921 CATTGATATAGT-CGACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTTG
1 CATTGCGATAGTCCAAGT-TCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCG
*
2914983 CGTTGCGATAGTCCAAGTTCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCG
1 CATTGCGATAGTCCAAGTTCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCG
* *
2915045 CTTTGCGATAGTCCAAGTTTGCATTGCGAT
1 CATTGCGATAGTCCAAGTTCGCATTGCGAT
2915075 AGTCGAAGTT
Statistics
Matches: 139, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
61 3 0.02
62 133 0.96
63 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (62 bp):
CATTGCGATAGTCCAAGTTCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCG
Found at i:2914943 original size:124 final size:124
Alignment explanation
Indices: 2914810--2915045 Score: 345
Period size: 124 Copynumber: 1.9 Consensus size: 124
2914800 CGCGAACTTG
*
2914810 GACTATCGCAATGCGAACTTGGAC-TA-TCGCATTGCGAT-TTACATA-TTCACATTGCGATAGT
1 GACTATCGCAATGCG-A-TT-GACATATTCGCATTGCGATAGTACA-AGTTCACATTGCGATAGT
2914871 CCAAGTTCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCGCATTGATATAGTC
62 CCAAGTTCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCGCATTGATATAGTC
* * * ** *
2914934 GACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTTGCGTTGCGATAGTCCAA
1 GACTATCGCAATGCGATTGACATATTCGCATTGCGATAGTACAAGTTCACATTGCGATAGTCCAA
2914999 GTTCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCGC
66 GTTCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCGC
2915046 TTTGCGATAG
Statistics
Matches: 101, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
121 2 0.02
122 4 0.04
123 14 0.14
124 81 0.80
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (124 bp):
GACTATCGCAATGCGATTGACATATTCGCATTGCGATAGTACAAGTTCACATTGCGATAGTCCAA
GTTCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCGCATTGATATAGTC
Found at i:2914996 original size:83 final size:82
Alignment explanation
Indices: 2914836--2915087 Score: 282
Period size: 83 Copynumber: 3.0 Consensus size: 82
2914826 ACTTGGACTA
* * * * * *
2914836 TCGCATTGCGATTTACATATTCACATTGCGATAGTCCAAGTTCGCATTGCGAT-TTACATA-TTC
1 TCGCATT-CGATATACATATTCGCATTGCGATAGTACAAGTTCGCATTGCGATAGTCCA-AGTTT
2914899 GCATTGCGATAGTCCAAGT
64 GCATTGCGATAGTCCAAGT
*
2914918 TCGCATT-GATATAGTCGACTA-TCGCATTGCGAT-TTACATA-TTCGCATTGCGATAGTCCAAG
1 TCGCATTCGATATA--C-A-TATTCGCATTGCGATAGTACA-AGTTCGCATTGCGATAGTCCAAG
*
2914979 TTTGCGTTGCGATAGTCCAAGT
61 TTTGCATTGCGATAGTCCAAGT
* * *
2915001 TCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCGCTTTGCGATAGTCCAAGTTTG
1 TCGCATT-CGATATACATATTCGCATTGCGATAGTACAAGTTCGCATTGCGATAGTCCAAGTTTG
*
2915066 CATTGCGATAGTCGAAGT
65 CATTGCGATAGTCCAAGT
2915084 TCGC
1 TCGC
2915088 GTTGCGAATC
Statistics
Matches: 144, Mismatches: 14, Indels: 23
0.80 0.08 0.13
Matches are distributed among these distances:
80 5 0.03
81 2 0.01
82 39 0.27
83 91 0.63
84 2 0.01
85 5 0.03
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (82 bp):
TCGCATTCGATATACATATTCGCATTGCGATAGTACAAGTTCGCATTGCGATAGTCCAAGTTTGC
ATTGCGATAGTCCAAGT
Found at i:2915991 original size:83 final size:83
Alignment explanation
Indices: 2915839--2915992 Score: 227
Period size: 83 Copynumber: 1.9 Consensus size: 83
2915829 TTTTTATAAC
* * * * * *
2915839 AAATGCCACTATAGATGAACCCTATTACGGTGTTTGTATAAAACCGCCGTTAACGTACTACTATG
1 AAATGCCACTATAGATGAACCCTATTACGGTATTTGTATAAAAACACCGCTAACGTACTAATATA
2915904 TTGCGGCGCTTGTTGAAA
66 TTGCGGCGCTTGTTGAAA
* * *
2915922 AAATGCCACTATAGATGAACCCTATTGCGGTATTTGTATAAAAACACCGCTAACGTATTAATCTA
1 AAATGCCACTATAGATGAACCCTATTACGGTATTTGTATAAAAACACCGCTAACGTACTAATATA
2915987 TTGCGG
66 TTGCGG
2915993 AATTTTTTTA
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
83 62 1.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (83 bp):
AAATGCCACTATAGATGAACCCTATTACGGTATTTGTATAAAAACACCGCTAACGTACTAATATA
TTGCGGCGCTTGTTGAAA
Found at i:2917123 original size:33 final size:35
Alignment explanation
Indices: 2917081--2917157 Score: 131
Period size: 33 Copynumber: 2.3 Consensus size: 35
2917071 ATATCAGACG
2917081 ACAAGAAAACAGAATGCCAAAGACA-T-TGACAGC
1 ACAAGAAAACAGAATGCCAAAGACATTATGACAGC
*
2917114 ACAAGAAAACAGAATGCCGAAGACATTATGACAGC
1 ACAAGAAAACAGAATGCCAAAGACATTATGACAGC
2917149 ACAAGAAAA
1 ACAAGAAAA
2917158 TAGAGGAAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
33 24 0.59
34 1 0.02
35 16 0.39
ACGTcount: A:0.53, C:0.19, G:0.18, T:0.09
Consensus pattern (35 bp):
ACAAGAAAACAGAATGCCAAAGACATTATGACAGC
Found at i:2917330 original size:48 final size:49
Alignment explanation
Indices: 2917274--2917366 Score: 152
Period size: 48 Copynumber: 1.9 Consensus size: 49
2917264 GATAAAATGC
*
2917274 AAGATTAATTTTAGAAGATCGCT-TAAACATTTTTCAAAAGAAAAAAAA
1 AAGATTAATTTTAGAAGATCGCTCCAAACATTTTTCAAAAGAAAAAAAA
* *
2917322 AAGATTAATTTTAGAAGATCTCTCCAAATATTTTTCAAAAGAAAA
1 AAGATTAATTTTAGAAGATCGCTCCAAACATTTTTCAAAAGAAAA
2917367 GAGAGATTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
48 22 0.54
49 19 0.46
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (49 bp):
AAGATTAATTTTAGAAGATCGCTCCAAACATTTTTCAAAAGAAAAAAAA
Found at i:2917405 original size:47 final size:46
Alignment explanation
Indices: 2917275--2917474 Score: 167
Period size: 46 Copynumber: 4.3 Consensus size: 46
2917265 ATAAAATGCA
* * *
2917275 AGATTAATTTTAGAAG--ATCGCTTAAACATTTTTCAAAAGAAAAAAAAA
1 AGATTAATTTTAGAAGAAATCTC-AAAACATTTTTCAAAAG---AAAAAG
** * *
2917323 AGATTAATTTTAGAAGATCTCTCCAAATATTTTTCAAAAGAAAAGAG
1 AGATTAATTTTAGAAGAAATCTCAAAACATTTTTCAAAAGAAAA-AG
*
2917370 AGATTAATTTTCA-AAGAAATCTCAAAACATCTTTC-AAAGAAAAAG
1 AGATTAATTTT-AGAAGAAATCTCAAAACATTTTTCAAAAGAAAAAG
* ** * ***
2917415 AGAATTAATTTTAGAACATCTCTCAAAATATTTTTTTTAA-AAAAAG
1 AG-ATTAATTTTAGAAGAAATCTCAAAACATTTTTCAAAAGAAAAAG
2917461 AGATTAATTTTAGA
1 AGATTAATTTTAGA
2917475 GGCTAAAATG
Statistics
Matches: 128, Mismatches: 17, Indels: 17
0.79 0.10 0.10
Matches are distributed among these distances:
45 17 0.13
46 45 0.35
47 31 0.24
48 17 0.13
49 15 0.12
50 3 0.02
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.33
Consensus pattern (46 bp):
AGATTAATTTTAGAAGAAATCTCAAAACATTTTTCAAAAGAAAAAG
Found at i:2917436 original size:93 final size:94
Alignment explanation
Indices: 2917298--2917471 Score: 237
Period size: 93 Copynumber: 1.9 Consensus size: 94
2917288 AAGATCGCTT
* * *
2917298 AAACATTTTTCAAAAGAAAAAAAAAAGATTAATTTTAGAAGATCTCTCCAAATATTTTTCAAAAG
1 AAACATCTTTCAAAAGAAAAAAAAAAGATTAATTTTAGAACATCTCTCAAAATATTTTTCAAAA-
2917363 AAAAGAGAGATTAATTTTCAAAGAAATCTCA
65 AAAA-AGAGATTAATTTTCAAAGAAATCTCA
* * ***
2917394 AAACATCTTTC-AAAG-AAAAAGAGA-ATTAATTTTAGAACATCTCTCAAAATATTTTTTTTAAA
1 AAACATCTTTCAAAAGAAAAAAAAAAGATTAATTTTAGAACATCTCTCAAAATATTTTTCAAAAA
2917456 AAAAGAGATTAATTTT
66 AAAAGAGATTAATTTT
2917472 AGAGGCTAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
91 13 0.19
92 4 0.06
93 32 0.46
94 7 0.10
95 4 0.06
96 10 0.14
ACGTcount: A:0.49, C:0.10, G:0.09, T:0.32
Consensus pattern (94 bp):
AAACATCTTTCAAAAGAAAAAAAAAAGATTAATTTTAGAACATCTCTCAAAATATTTTTCAAAAA
AAAAGAGATTAATTTTCAAAGAAATCTCA
Found at i:2917439 original size:46 final size:46
Alignment explanation
Indices: 2917275--2917474 Score: 192
Period size: 47 Copynumber: 4.3 Consensus size: 46
2917265 ATAAAATGCA
* * * *
2917275 AGATTAATTTTAGAAGATCGCT-TAAACATTTTTCAAAAGAAAAAAAAA
1 AGATTAATTTTAGAAGATCTCTCAAAACATTTTTC--AA-AAAAAAGAG
* *
2917323 AGATTAATTTTAGAAGATCTCTCCAAATATTTTTCAAAAGAAAAGAG
1 AGATTAATTTTAGAAGATCTCTCAAAACATTTTTCAAAA-AAAAGAG
** *
2917370 AGATTAATTTTCA-AAGAAATCTCAAAACATCTTTCAAAGAAAAAGAG
1 AGATTAATTTT-AGAAGATCTCTCAAAACATTTTTCAAA-AAAAAGAG
* * ***
2917417 A-ATTAATTTTAGAACATCTCTCAAAATATTTTTTTTAAAAAA-AG
1 AGATTAATTTTAGAAGATCTCTCAAAACATTTTTCAAAAAAAAGAG
2917461 AGATTAATTTTAGA
1 AGATTAATTTTAGA
2917475 GGCTAAAATG
Statistics
Matches: 128, Mismatches: 18, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
44 3 0.02
45 18 0.14
46 28 0.22
47 46 0.36
48 23 0.18
49 10 0.08
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.33
Consensus pattern (46 bp):
AGATTAATTTTAGAAGATCTCTCAAAACATTTTTCAAAAAAAAGAG
Found at i:2920071 original size:20 final size:20
Alignment explanation
Indices: 2920046--2920099 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
2920036 ACCCTTACTT
**
2920046 ATGGTATCGATACCCTTGCC
1 ATGGTATCGATACCCTCACC
2920066 ATGGTATCGATACCCTCACC
1 ATGGTATCGATACCCTCACC
2920086 ATGGTATCGATACC
1 ATGGTATCGATACC
2920100 AAAATAGTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (20 bp):
ATGGTATCGATACCCTCACC
Found at i:2926475 original size:90 final size:89
Alignment explanation
Indices: 2926323--2926489 Score: 289
Period size: 90 Copynumber: 1.9 Consensus size: 89
2926313 CCTTTTATAG
*
2926323 CCAAGTTACCCTAACCATATTAGGTTTTTATTATTTCAAATTAATTAAATCTATATTTAATTAAT
1 CCAAGTTACCCTAACCATATTAGGATTTTATTATTTCAAATTAATTAAATCTATATTTAATTAAT
* *
2926388 TGGAATTTAATAATCATTTTGTAT
66 TGAAATTAAATAATCATTTTGTAT
*
2926412 CCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTATATTTAATTAA
1 CCAAGTTACCCTAACCATATTA-GGATTTTATTATTTCAAATTAATTAAATCTATATTTAATTAA
2926477 TTGAAATTAAATA
65 TTGAAATTAAATA
2926490 TTTGGGATTA
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
89 21 0.29
90 52 0.71
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.44
Consensus pattern (89 bp):
CCAAGTTACCCTAACCATATTAGGATTTTATTATTTCAAATTAATTAAATCTATATTTAATTAAT
TGAAATTAAATAATCATTTTGTAT
Found at i:2941420 original size:75 final size:75
Alignment explanation
Indices: 2941308--2941499 Score: 287
Period size: 75 Copynumber: 2.5 Consensus size: 75
2941298 TTTATTTAGT
* * * *
2941308 ATGGTATCAATACCCCCATATAGGGTACCGATACCCCTATGAATATTTTGGTTCCGAGAAATAAC
1 ATGGTACCGATACCCCC-TATAGGGTACCGATACCCCTATGAACATTTTGGTTCCAAGAAATAAC
2941373 AGAATGCTCAG
65 AGAATGCTCAG
*
2941384 ATGGTACCGATACCCCCTATAGGGTACCGATACCCCTATGAACATTTTGGTTCCAAGAAATAATA
1 ATGGTACCGATACCCCCTATAGGGTACCGATACCCCTATGAACATTTTGGTTCCAAGAAATAACA
*
2941449 GAATGCTCGG
66 GAATGCTCAG
* *
2941459 ATGGTACCGATACCCCCTAGTA-GGTATCGATACCCCCATGA
1 ATGGTACCGATACCCCCTA-TAGGGTACCGATACCCCTATGA
2941500 TATGGTATAT
Statistics
Matches: 107, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
75 90 0.84
76 17 0.16
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (75 bp):
ATGGTACCGATACCCCCTATAGGGTACCGATACCCCTATGAACATTTTGGTTCCAAGAAATAACA
GAATGCTCAG
Found at i:2941489 original size:20 final size:21
Alignment explanation
Indices: 2941461--2941536 Score: 66
Period size: 20 Copynumber: 3.6 Consensus size: 21
2941451 ATGCTCGGAT
2941461 GGTACCGATACCCCCTA-GTA
1 GGTACCGATACCCCCTACGTA
* *
2941481 GGTATCGATACCCCC-ATGATA
1 GGTACCGATACCCCCTACG-TA
*** *
2941502 TGGTATATATACCCCCTACTTA
1 -GGTACCGATACCCCCTACGTA
2941524 GGTACCGATACCC
1 GGTACCGATACCC
2941537 TCAGGCATTT
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
19 1 0.02
20 15 0.34
21 12 0.27
22 15 0.34
23 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (21 bp):
GGTACCGATACCCCCTACGTA
Found at i:2947332 original size:23 final size:22
Alignment explanation
Indices: 2947302--2947401 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 22
2947292 CCTGATACAT
2947302 GTATCGATACCCCCTTTGAATAG
1 GTATCGATACCCCCTTTGAAT-G
*
2947325 GTATCGATA--CCCATTGAATAG
1 GTATCGATACCCCCTTTGAAT-G
**
2947346 GTATCGATACCCTATTTGAATG
1 GTATCGATACCCCCTTTGAATG
*
2947368 AGTATCGATACACCCC-CTG-ATG
1 -GTATCGATAC-CCCCTTTGAATG
2947390 GTATCGATACCC
1 GTATCGATACCC
2947402 TCTGTCGGGT
Statistics
Matches: 66, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
20 2 0.03
21 30 0.45
22 4 0.06
23 28 0.42
24 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (22 bp):
GTATCGATACCCCCTTTGAATG
Found at i:2947343 original size:21 final size:21
Alignment explanation
Indices: 2947276--2947378 Score: 93
Period size: 21 Copynumber: 4.7 Consensus size: 21
2947266 AGTTACTTGC
*
2947276 ATAGAGTATCGATACCC-CTGA
1 ATAG-GTATCGATACCCATTGA
* * *
2947297 TACATGTATCGATACCCCCTTTGA
1 -ATAGGTATCGATA--CCCATTGA
2947321 ATAGGTATCGATACCCATTGA
1 ATAGGTATCGATACCCATTGA
2947342 ATAGGTATCGATACCCTATTTGA
1 ATAGGTATCGATACCC-A-TTGA
2947365 AT-GAGTATCGATAC
1 ATAG-GTATCGATAC
2947379 ACCCCCTGAT
Statistics
Matches: 69, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
21 32 0.46
22 4 0.06
23 30 0.43
24 3 0.04
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.30
Consensus pattern (21 bp):
ATAGGTATCGATACCCATTGA
Found at i:2947350 original size:44 final size:45
Alignment explanation
Indices: 2947276--2947378 Score: 131
Period size: 44 Copynumber: 2.3 Consensus size: 45
2947266 AGTTACTTGC
* *
2947276 ATAGAGTATCGATACCCCTGATACATGTATCGATACCCCCTTTGA
1 ATAGAGTATCGATACCCCTGATACAGGTATCGATACCCCATTTGA
* * *
2947321 ATAG-GTATCGATACCCATTGA-ATAGGTATCGATACCCTATTTGA
1 ATAGAGTATCGATACCC-CTGATACAGGTATCGATACCCCATTTGA
2947365 AT-GAGTATCGATAC
1 ATAGAGTATCGATAC
2947379 ACCCCCTGAT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 43 0.84
45 7 0.14
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.30
Consensus pattern (45 bp):
ATAGAGTATCGATACCCCTGATACAGGTATCGATACCCCATTTGA
Found at i:2947393 original size:44 final size:44
Alignment explanation
Indices: 2947276--2947402 Score: 127
Period size: 44 Copynumber: 2.9 Consensus size: 44
2947266 AGTTACTTGC
* * **
2947276 ATAGAGTATCGATACCC-CTGATACATGTATCGATACCCCCTTTGA
1 ATAG-GTATCGATACCCACTGA-ATAGGTATCGATACCCTATTTGA
*
2947321 ATAGGTATCGATACCCATTGAATAGGTATCGATACCCTATTTGA
1 ATAGGTATCGATACCCACTGAATAGGTATCGATACCCTATTTGA
*
2947365 AT-GAGTATCGATACACCCCCTG-AT-GGTATCGATACCCT
1 ATAG-GTATCGAT--ACCCACTGAATAGGTATCGATACCCT
2947403 CTGTCGGGTT
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
43 1 0.01
44 55 0.77
45 9 0.13
46 6 0.08
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (44 bp):
ATAGGTATCGATACCCACTGAATAGGTATCGATACCCTATTTGA
Found at i:2949666 original size:27 final size:27
Alignment explanation
Indices: 2949635--2949688 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
2949625 TTTTAAAGGC
*
2949635 GAGAAGTGTTAGAGTAAGGTGGAGTAA
1 GAGAAGTGTTAGAGTAAGGGGGAGTAA
2949662 GAGAAGTGTTAGAGTAAGGGGGAGTAA
1 GAGAAGTGTTAGAGTAAGGGGGAGTAA
2949689 TTTTCAATCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.37, C:0.00, G:0.43, T:0.20
Consensus pattern (27 bp):
GAGAAGTGTTAGAGTAAGGGGGAGTAA
Found at i:2950134 original size:77 final size:77
Alignment explanation
Indices: 2950042--2950190 Score: 246
Period size: 77 Copynumber: 1.9 Consensus size: 77
2950032 TACCCCCATA
* ** *
2950042 TAGGGTACCGATACCCCTATGAATATTTTGGTTCCGAGAAATAA-ATTAATGCTCGGATGGTACC
1 TAGGGTACCGATACCCCTATGAACATTTAAGTTCCGAGAAATAACA-GAATGCTCGGATGGTACC
2950106 GATACCCCCCCTT
65 GATACCCCCCCTT
2950119 TAGGGTACCGATACCCCTATGAACATTTAAGTTCCGAGAAATAACAGAATGCTCGGATGGTACCG
1 TAGGGTACCGATACCCCTATGAACATTTAAGTTCCGAGAAATAACAGAATGCTCGGATGGTACCG
2950184 ATACCCC
66 ATACCCC
2950191 TAGTAGGTAA
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 66 0.99
78 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (77 bp):
TAGGGTACCGATACCCCTATGAACATTTAAGTTCCGAGAAATAACAGAATGCTCGGATGGTACCG
ATACCCCCCCTT
Found at i:2952306 original size:17 final size:17
Alignment explanation
Indices: 2952268--2952314 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
2952258 TGTGTTTTTA
2952268 ATATT-TTATTTATAAAT
1 ATATTATTA-TTATAAAT
* *
2952285 TTATTATTATTATATAT
1 ATATTATTATTATAAAT
*
2952302 ATATTATGATTAT
1 ATATTATTATTAT
2952315 CTTTGTTTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 22 0.88
18 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (17 bp):
ATATTATTATTATAAAT
Found at i:2953509 original size:4 final size:4
Alignment explanation
Indices: 2953502--2953527 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
2953492 TCGTCATTTC
2953502 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
2953528 TTATTTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:2956306 original size:11 final size:11
Alignment explanation
Indices: 2956290--2956321 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
2956280 AGGACAAAGA
2956290 AAAAAAGATGG
1 AAAAAAGATGG
2956301 AAAAAAGATGG
1 AAAAAAGATGG
2956312 AAGAAAAGAT
1 AA-AAAAGAT
2956322 TAAGATGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.65
12 7 0.35
ACGTcount: A:0.66, C:0.00, G:0.25, T:0.09
Consensus pattern (11 bp):
AAAAAAGATGG
Found at i:2962306 original size:7 final size:7
Alignment explanation
Indices: 2962294--2962327 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
2962284 CTTAAGTCGA
2962294 AAAAAAC
1 AAAAAAC
2962301 AAAAAAC
1 AAAAAAC
2962308 AAAAAAC
1 AAAAAAC
2962315 AAAAAAC
1 AAAAAAC
2962322 AAAAAA
1 AAAAAA
2962328 AACGTTTAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:2963718 original size:109 final size:109
Alignment explanation
Indices: 2963522--2963756 Score: 307
Period size: 109 Copynumber: 2.2 Consensus size: 109
2963512 TCCCAATTTT
* * * *
2963522 AGAGCCAATTTCAACTTCATAGCGAAAGATATTGGACCCAAGACAACACGAGCTCAACTTCACGA
1 AGAGCCAATTTCAACTTCACAACGAAAGATATTGGACCCAAGAAAACACAAGCTCAACTTCACGA
* *
2963587 CGAAGGGGTGGCTGATTGTCAACAAACAACTTTTCATTTCATTC
66 CGAAGGGGCGGCTGACTGTCAACAAACAACTTTTCATTTCATTC
* * * *
2963631 AGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGAAAACACAAGCTCAACTTTACGA
1 AGAGCCAATTTCAACTTCACAACGAAAGATATTGGACCCAAGAAAACACAAGCTCAACTTCACGA
* * *
2963696 CGAAGGGGCGGCTGGCTGTCAACAAACAA-TTTCCCAGTTC---C
66 CGAAGGGGCGGCTGACTGTCAACAAACAACTTT-TCATTTCATTC
*
2963737 AGAACCAATTTCAACTTCAC
1 AGAGCCAATTTCAACTTCAC
2963757 GGCGGAGGAT
Statistics
Matches: 110, Mismatches: 15, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
106 19 0.17
108 3 0.03
109 88 0.80
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.23
Consensus pattern (109 bp):
AGAGCCAATTTCAACTTCACAACGAAAGATATTGGACCCAAGAAAACACAAGCTCAACTTCACGA
CGAAGGGGCGGCTGACTGTCAACAAACAACTTTTCATTTCATTC
Found at i:2965841 original size:17 final size:17
Alignment explanation
Indices: 2965812--2965858 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
2965802 TGTATTTTTA
2965812 ATATT-TTATTTATAAAT
1 ATATTATTA-TTATAAAT
* **
2965829 TTATTATTATTATATGT
1 ATATTATTATTATAAAT
2965846 ATATTATTATTAT
1 ATATTATTATTAT
2965859 CTTTGTTTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 22 0.88
18 3 0.12
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (17 bp):
ATATTATTATTATAAAT
Found at i:2965848 original size:23 final size:22
Alignment explanation
Indices: 2965805--2965848 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
2965795 ATATGCATGT
* *
2965805 ATTTTTAATATTTTATTTATAA
1 ATTTTTAATATTATATGTATAA
*
2965827 ATTTATTATTATTATATGTATA
1 ATTT-TTAATATTATATGTATA
2965849 TTATTATTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
ATTTTTAATATTATATGTATAA
Found at i:2965901 original size:2 final size:2
Alignment explanation
Indices: 2965894--2965958 Score: 66
Period size: 2 Copynumber: 34.5 Consensus size: 2
2965884 ACTTTGTCAT
*
2965894 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T- TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
2965934 TT TA TA CA TC TA T- TA T- TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
2965959 TAATTGTTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
1 4 0.08
2 48 0.92
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:2966246 original size:35 final size:36
Alignment explanation
Indices: 2966175--2966246 Score: 85
Period size: 35 Copynumber: 2.0 Consensus size: 36
2966165 TCATTGTCTT
*
2966175 TGTTTTTACTATCGTTTTATTTTTGTTTTTTCTTTA
1 TGTTTTTACTATCGTTTTATTTTTGTTTTCTCTTTA
** *
2966211 TGTTTTTAC-ATTTTTTTATTATTT-TTTTCTGTTTA
1 TGTTTTTACTATCGTTTTATT-TTTGTTTTCTCTTTA
2966246 T
1 T
2966247 TTATTTTGTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
35 19 0.61
36 12 0.39
ACGTcount: A:0.12, C:0.07, G:0.07, T:0.74
Consensus pattern (36 bp):
TGTTTTTACTATCGTTTTATTTTTGTTTTCTCTTTA
Found at i:2969975 original size:95 final size:95
Alignment explanation
Indices: 2969865--2970057 Score: 350
Period size: 95 Copynumber: 2.0 Consensus size: 95
2969855 TTAACCTTTC
*
2969865 TTCCTTTTTCACACAATAAAAAATAAGCTCATTTGGAGTTCATTTTTCTCTTTGATTTAATTAAA
1 TTCCTTTTTCACACAATAAAAAATAAGCTCATTTAGAGTTCATTTTTCTCTTTGATTTAATTAAA
* *
2969930 GAGAAACACTGAAATCATAGGAACAAGTAA
66 GAGAAACACTGAAATCAGAAGAACAAGTAA
2969960 TTCCTTTTTCACACAATAAAAAATAAGCTCATTTAGAGTTCATTTTTCTCTTTGATTTAATTAAA
1 TTCCTTTTTCACACAATAAAAAATAAGCTCATTTAGAGTTCATTTTTCTCTTTGATTTAATTAAA
*
2970025 GAGAAATACTGAAATCAGAAGAACAAGTAA
66 GAGAAACACTGAAATCAGAAGAACAAGTAA
2970055 TTC
1 TTC
2970058 TTTAGGAAAA
Statistics
Matches: 94, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
95 94 1.00
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (95 bp):
TTCCTTTTTCACACAATAAAAAATAAGCTCATTTAGAGTTCATTTTTCTCTTTGATTTAATTAAA
GAGAAACACTGAAATCAGAAGAACAAGTAA
Found at i:2975775 original size:15 final size:15
Alignment explanation
Indices: 2975752--2975787 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
2975742 CTCACCTAAC
2975752 ATGCAACTATATAAT
1 ATGCAACTATATAAT
*
2975767 ATGCTACTATATAAT
1 ATGCAACTATATAAT
2975782 ATGCAA
1 ATGCAA
2975788 TATGTAGCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.33
Consensus pattern (15 bp):
ATGCAACTATATAAT
Found at i:2977432 original size:23 final size:23
Alignment explanation
Indices: 2977402--2977447 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
2977392 AGATTTTCAC
2977402 TTTATTTTTCTCTTCTTTCTCTT
1 TTTATTTTTCTCTTCTTTCTCTT
* * *
2977425 TTTATTTTTTTCTTGTTTTTCTT
1 TTTATTTTTCTCTTCTTTCTCTT
2977448 CTTTCTTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.04, C:0.15, G:0.02, T:0.78
Consensus pattern (23 bp):
TTTATTTTTCTCTTCTTTCTCTT
Found at i:2977452 original size:16 final size:16
Alignment explanation
Indices: 2977406--2977455 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
2977396 TTTCACTTTA
*
2977406 TTTTTCTCTTCTTTCT
1 TTTTTATCTTCTTTCT
*
2977422 CTTTTTAT-TTTTTTCT
1 -TTTTTATCTTCTTTCT
2977438 TGTTTT-TCTTCTTTCT
1 T-TTTTATCTTCTTTCT
2977454 TT
1 TT
2977456 CTTCTATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
15 3 0.11
16 19 0.68
17 6 0.21
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.78
Consensus pattern (16 bp):
TTTTTATCTTCTTTCT
Found at i:2977453 original size:32 final size:34
Alignment explanation
Indices: 2977407--2977471 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
2977397 TTCACTTTAT
*
2977407 TTTTCTCTTCTTTCTCTT-TT-TATTTTTTTCTTG
1 TTTTCTCTTCTTTCT-TTCTTCTATTTTCTTCTTG
2977440 TTTT-TCTTCTTTCTTTCTTCTATTTTCTTCTT
1 TTTTCTCTTCTTTCTTTCTTCTATTTTCTTCTT
2977472 CAAGTAGTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 2 0.07
32 12 0.41
33 15 0.52
ACGTcount: A:0.03, C:0.20, G:0.02, T:0.75
Consensus pattern (34 bp):
TTTTCTCTTCTTTCTTTCTTCTATTTTCTTCTTG
Found at i:2977467 original size:21 final size:20
Alignment explanation
Indices: 2977406--2977471 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 20
2977396 TTTCACTTTA
2977406 TTTTTC-TC-TTCTTTC-TC
1 TTTTTCTTCTTTCTTTCTTC
* *
2977423 TTTTT-AT-TTT-TTTCTTG
1 TTTTTCTTCTTTCTTTCTTC
2977440 TTTTTCTTCTTTCTTTCTTC
1 TTTTTCTTCTTTCTTTCTTC
2977460 TATTTTCTTCTT
1 T-TTTTCTTCTT
2977472 CAAGTAGTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
16 4 0.10
17 14 0.36
18 1 0.03
19 3 0.08
20 7 0.18
21 10 0.26
ACGTcount: A:0.03, C:0.20, G:0.02, T:0.76
Consensus pattern (20 bp):
TTTTTCTTCTTTCTTTCTTC
Found at i:2992561 original size:162 final size:161
Alignment explanation
Indices: 2992383--2992718 Score: 512
Period size: 162 Copynumber: 2.1 Consensus size: 161
2992373 TATACTTATT
2992383 AAAGTATCGATACCTTCAACATATCCGATAGCACTTTATCC-GTTTTGGCATAATGAAACCAATT
1 AAAGTATCGATACCTTCAACATATCCGATAGCACTTTA-CCGGTTTTGGCATAATGAAACCAATT
* * * *
2992447 TTGTCATATTTTTACCTGTTATATTGTTATGTATTGATACATGTTTATAAAGTGTCGATACTTTA
65 TTGTCATATTTTAACCTGATATATTGTTATGTATCGATACATGTTTATAAAGTATCGATACTTTA
*
2992512 TATGCGCTATTATTGCTTTTCTTTTAAATTCCA
130 TAGGCGCTATTATTG-TTTTCTTTTAAATTCCA
* * * * * *
2992545 AAAGTATCGATACCTTCAACATATCCGGTAGCTCTTTACCGGTTTTGTCATATTGAACCCGATTT
1 AAAGTATCGATACCTTCAACATATCCGATAGCACTTTACCGGTTTTGGCATAATGAAACCAATTT
* *
2992610 TGTCATGTTTTAACCTGATATATTGTTATGTATCGATACATGTTTATAAAGTATTGATACTTTAT
66 TGTCATATTTTAACCTGATATATTGTTATGTATCGATACATGTTTATAAAGTATCGATACTTTAT
*
2992675 AGGCGCTATTATTGTTTTTTTTTAAATTCCA
131 AGGCGCTATTATTGTTTTCTTTTAAATTCCA
*
2992706 AAAGTATCAATAC
1 AAAGTATCGATAC
2992719 TAATTTGAAT
Statistics
Matches: 158, Mismatches: 15, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
161 30 0.19
162 128 0.81
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.43
Consensus pattern (161 bp):
AAAGTATCGATACCTTCAACATATCCGATAGCACTTTACCGGTTTTGGCATAATGAAACCAATTT
TGTCATATTTTAACCTGATATATTGTTATGTATCGATACATGTTTATAAAGTATCGATACTTTAT
AGGCGCTATTATTGTTTTCTTTTAAATTCCA
Found at i:2992856 original size:182 final size:183
Alignment explanation
Indices: 2992549--2992960 Score: 623
Period size: 182 Copynumber: 2.3 Consensus size: 183
2992539 ATTCCAAAAG
*
2992549 TATCGATACCTTCAACATATCCGGTAGCTCTTTACCGGTTTTGTCATATTGAACCCGATTTTGTC
1 TATCGATACCTTCAACATATCCGGTAGCTCTTTACCAGTTTTGTCATATTGAACCCGATTTTGTC
* * * *
2992614 ATGTTTTAACCTGATATATTGTTATGTATCGATACATGTTTATAAAGTATTGATACTTTATAGGC
66 ATATTTTAACCTAATATATTGTTATGTATCAATACATGTTTATAAAGTATCGATACTTTATAGGC
* *
2992679 GCTATTATTG-TTTTTTTTTAAATTCCAAAAGTATCAATAC-TAATTTGAATGA
131 GCTATTATTGCTTTTCTTTTAAATTCCAAAAGTATCAATACAT-ATTTAAATGA
* * * *
2992731 TATCGATACCTTCAACATATCTGGTAGCTATTTACCAGTTTTGTCATATTGAACCTGGTTTTGTC
1 TATCGATACCTTCAACATATCCGGTAGCTCTTTACCAGTTTTGTCATATTGAACCCGATTTTGTC
* *
2992796 ATATTTTTACCTAATATATTGTTATGTCTCAATACATGTTTATAAAGTATCGATACTTTATAGGC
66 ATATTTTAACCTAATATATTGTTATGTATCAATACATGTTTATAAAGTATCGATACTTTATAGGC
* * *
2992861 GCTATTATTGCTTTTCTTTTAAATTCCAAAAGTGTCGATACATATTTAAATGG
131 GCTATTATTGCTTTTCTTTTAAATTCCAAAAGTATCAATACATATTTAAATGA
* *
2992914 TATTGATACCTTCAACATATCCGGTAG-TGCTTTACTAGTTTTGTCAT
1 TATCGATACCTTCAACATATCCGGTAGCT-CTTTACCAGTTTTGTCAT
2992961 TTTTTTACAT
Statistics
Matches: 207, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
182 130 0.63
183 76 0.37
184 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.43
Consensus pattern (183 bp):
TATCGATACCTTCAACATATCCGGTAGCTCTTTACCAGTTTTGTCATATTGAACCCGATTTTGTC
ATATTTTAACCTAATATATTGTTATGTATCAATACATGTTTATAAAGTATCGATACTTTATAGGC
GCTATTATTGCTTTTCTTTTAAATTCCAAAAGTATCAATACATATTTAAATGA
Found at i:2995921 original size:13 final size:13
Alignment explanation
Indices: 2995903--2995929 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2995893 TAGTTAACCT
2995903 TGTCATAACATTA
1 TGTCATAACATTA
2995916 TGTCATAACATTA
1 TGTCATAACATTA
2995929 T
1 T
2995930 CTTTCTCCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (13 bp):
TGTCATAACATTA
Found at i:2998626 original size:44 final size:44
Alignment explanation
Indices: 2998428--2998760 Score: 147
Period size: 44 Copynumber: 7.5 Consensus size: 44
2998418 AATTGTATTA
* * * * **
2998428 ATCCACCTCTTTCTGTGATGGAATCT-AGCAAAAGTGACAACATTG
1 ATCCACCTCCTTCTATGATGGAAT-TGAGCGAAA-TGAAAATGTTG
** * ** * *
2998473 ATCCACCTCCTTCTATGATGGAATCAAAC-ATAATGTTAGTGCTG
1 ATCCACCTCCTTCTATGATGGAATTGAGCGA-AATGAAAATGTTG
* * * * * * ***
2998517 ATCTACCTCATTCTATGATAGAATCGAGCAAAAAGTTGATGTTG
1 ATCCACCTCCTTCTATGATGGAATTGAGCGAAATGAAAATGTTG
* * * *
2998561 ATCCAACTCC-T-TAAGCAATGGATTTGAGCGAAATGAAAATGCTG
1 ATCCACCTCCTTCTATG--ATGGAATTGAGCGAAATGAAAATGTTG
* ** *
2998605 ATCCACCTCCTTCTATGATGGAATTGAACGAAATGTCAGTGTTG
1 ATCCACCTCCTTCTATGATGGAATTGAGCGAAATGAAAATGTTG
** * * ** * * ** *
2998649 ATATACCTCCTTATGTGACAGAATTGAGCAAAAAGTTAGTGTTG
1 ATCCACCTCCTTCTATGATGGAATTGAGCGAAATGAAAATGTTG
* * *
2998693 ATCCAACTCC-T-TATGCAATGGATTTGAGTGAAATGAAAATGTTG
1 ATCCACCTCCTTCTATG--ATGGAATTGAGCGAAATGAAAATGTTG
* *
2998737 ATCCACCTCATTCTGTGATGGAAT
1 ATCCACCTCCTTCTATGATGGAAT
2998761 CGAAAGAAAT
Statistics
Matches: 210, Mismatches: 67, Indels: 23
0.70 0.22 0.08
Matches are distributed among these distances:
42 6 0.03
43 2 0.01
44 167 0.80
45 29 0.14
46 6 0.03
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Consensus pattern (44 bp):
ATCCACCTCCTTCTATGATGGAATTGAGCGAAATGAAAATGTTG
Found at i:2998640 original size:132 final size:132
Alignment explanation
Indices: 2998471--2998890 Score: 533
Period size: 132 Copynumber: 3.2 Consensus size: 132
2998461 GTGACAACAT
* * *
2998471 TGATCCACCTCCTTCTATGATGGAATCAAAC-ATAATGTTAGTGCTGATCTACCTCATTCTATGA
1 TGATCCACCTCCTTCTATGATGGAATCGAACGA-AATGTTAGTGTTGATCTACCTCATTCTGTGA
2998535 TAGAATCGAGCAAAAAGTTGATGTTGATCCAACTCCTTAAGCAATGGATTTGAGCGAAATGAAAA
65 TAGAATCGAGCAAAAAGTTGATGTTGATCCAACTCCTTAAGCAATGGATTTGAGCGAAATGAAAA
2998600 TGC
130 TGC
* * * * * *
2998603 TGATCCACCTCCTTCTATGATGGAATTGAACGAAATGTCAGTGTTGATATACCTCCTTATGTGAC
1 TGATCCACCTCCTTCTATGATGGAATCGAACGAAATGTTAGTGTTGATCTACCTCATTCTGTGAT
* * *
2998668 AGAATTGAGCAAAAAGTT-AGTGTTGATCCAACTCCTTATGCAATGGATTTGAGTGAAATGAAAA
66 AGAATCGAGCAAAAAGTTGA-TGTTGATCCAACTCCTTAAGCAATGGATTTGAGCGAAATGAAAA
*
2998732 TGT
130 TGC
* * *
2998735 TGATCCACCTCATTCTGTGATGGAATCGAAAGAAATGTTAGTGTTGATCTACCTCATTCTGTGAT
1 TGATCCACCTCCTTCTATGATGGAATCGAACGAAATGTTAGTGTTGATCTACCTCATTCTGTGAT
* * * ** * **
2998800 AGAATCAAACAAAAAGTGGATACTGAGT-CAACTCCTTATA-CGATGGATTTGAGCGAAATGATG
66 AGAATCGAGCAAAAAGTTGATGTTGA-TCCAACTCCTTA-AGCAATGGATTTGAGCGAAATGAAA
2998863 ATGC
129 ATGC
* * *
2998867 TGATCCAACTCCTTATCTGATGGA
1 TGATCCACCTCCTTCTATGATGGA
2998891 TGAGAAAAAT
Statistics
Matches: 245, Mismatches: 38, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
131 1 0.00
132 241 0.98
133 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (132 bp):
TGATCCACCTCCTTCTATGATGGAATCGAACGAAATGTTAGTGTTGATCTACCTCATTCTGTGAT
AGAATCGAGCAAAAAGTTGATGTTGATCCAACTCCTTAAGCAATGGATTTGAGCGAAATGAAAAT
GC
Found at i:2998770 original size:44 final size:44
Alignment explanation
Indices: 2998722--2998805 Score: 123
Period size: 44 Copynumber: 1.9 Consensus size: 44
2998712 GGATTTGAGT
*
2998722 GAAATGAAAATGTTGATCCACCTCATTCTGTGATGGAATCGAAA
1 GAAATGAAAATGTTGATCCACCTCATTCTGTGATAGAATCGAAA
** * *
2998766 GAAATGTTAGTGTTGATCTACCTCATTCTGTGATAGAATC
1 GAAATGAAAATGTTGATCCACCTCATTCTGTGATAGAATC
2998806 AAACAAAAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32
Consensus pattern (44 bp):
GAAATGAAAATGTTGATCCACCTCATTCTGTGATAGAATCGAAA
Found at i:2999239 original size:139 final size:139
Alignment explanation
Indices: 2998905--2999445 Score: 719
Period size: 139 Copynumber: 3.9 Consensus size: 139
2998895 AAAAATTTGG
* * * *
2998905 TGTTG-TTCCAACTCCTTATGTGATGGAAACAAGTTAAGGTTGAACAAGTTCTTCTCATTATGAA
1 TGTTGATT-CAACTCCATATGTGAT-GAATCGAGCTAAGGTTGAACAAGTTCTTCTCATTATGAA
* * *
2998969 CTTTTTCTCCCTTATCGGATGAGTTATTCTCATTATGAAAGCTC-CCATTAGAAATGTTGATCCC
64 CTTCTTCTCCCTCATCGGATGAGTTATTCTCATTATG-AA-CTCTCCACTAGAAATGTTGATCCC
2999033 TCGAGTGAGGTGT
127 TCGAGTGAGGTGT
** * *
2999046 TGTTGATTTGACTCCATATGTGATGAATCGAGTTAAGGTTGAACAAGTTTTTCTCATTATGAACT
1 TGTTGATTCAACTCCATATGTGATGAATCGAGCTAAGGTTGAACAAGTTCTTCTCATTATGAACT
* * * * * *
2999111 TCTTCTCCCTCATCGGATGAGTTCTTCTCCTTATGAATTCTCCACTAGAAATGTTTATCCATTGA
66 TCTTCTCCCTCATCGGATGAGTTATTCTCATTATGAACTCTCCACTAGAAATGTTGATCCCTCGA
2999176 GTGAGGTGT
131 GTGAGGTGT
* * ** *
2999185 TGCTGATTCCACTCCATATGTGATGAATCGAGCTAATATTGAACAAGTTCTTCTCATTGTGAACT
1 TGTTGATTCAACTCCATATGTGATGAATCGAGCTAAGGTTGAACAAGTTCTTCTCATTATGAACT
* * * *
2999250 TCTTCTCCATCATCGAATGCGTTA-TCGTCATTATGAACTCTCCACTGGAAATGTTGATCCCTCG
66 TCTTCTCCCTCATCGGATGAGTTATTC-TCATTATGAACTCTCCACTAGAAATGTTGATCCCTCG
2999314 AGTGAGGTGT
130 AGTGAGGTGT
* * * *
2999324 TGTTGAATCAACTCCATATGTGATCAATCGAGCTAAGGTTAAACAAGTTCTTTTCATTATGAACT
1 TGTTGATTCAACTCCATATGTGATGAATCGAGCTAAGGTTGAACAAGTTCTTCTCATTATGAACT
* * *
2999389 TCTTCTCCCTCATCGGATGAGTTATTCTCATTATAAACTCTCTACTAGAAATATTGA
66 TCTTCTCCCTCATCGGATGAGTTATTCTCATTATGAACTCTCCACTAGAAATGTTGA
2999446 CTGTTTTACC
Statistics
Matches: 347, Mismatches: 49, Indels: 10
0.85 0.12 0.02
Matches are distributed among these distances:
138 4 0.01
139 252 0.73
140 71 0.20
141 18 0.05
142 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.37
Consensus pattern (139 bp):
TGTTGATTCAACTCCATATGTGATGAATCGAGCTAAGGTTGAACAAGTTCTTCTCATTATGAACT
TCTTCTCCCTCATCGGATGAGTTATTCTCATTATGAACTCTCCACTAGAAATGTTGATCCCTCGA
GTGAGGTGT
Found at i:2999994 original size:20 final size:20
Alignment explanation
Indices: 2999969--3000015 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
2999959 ATATCTTTCT
* *
2999969 CGAAGGTCTTATGGAT-AGCC
1 CGAAGGACTTATAGATGA-CC
2999989 CGAAGGACTTATAGATGACC
1 CGAAGGACTTATAGATGACC
3000009 CGAAGGA
1 CGAAGGA
3000016 TTTAATCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.30, T:0.19
Consensus pattern (20 bp):
CGAAGGACTTATAGATGACC
Found at i:3000203 original size:54 final size:53
Alignment explanation
Indices: 3000130--3000912 Score: 326
Period size: 53 Copynumber: 14.4 Consensus size: 53
3000120 ATCATAAAAA
* *
3000130 AAACCCTTAAAAATTAGGCTTAGCTTTTTTAAAAATTCATTTGAAAATATCAAG
1 AAACCCTTGAAAATCAGGCTTAGCTTTTTT-AAAATTCATTTGAAAATATCAAG
* * * *
3000184 AAACCCTTGAAAATCAGGCTTAGCTTCTTTCAAATTCATTTGAAAACATTAAG
1 AAACCCTTGAAAATCAGGCTTAGCTTTTTTAAAATTCATTTGAAAATATCAAG
* * * * * * * *
3000237 AAACCCCTAAAAATTAGACGTAGCGTCTTTCAAATTCATTTGAAAATATCAAG
1 AAACCCTTGAAAATCAGGCTTAGCTTTTTTAAAATTCATTTGAAAATATCAAG
* * * * * *
3000290 AAACCCCT-AAAATTTAGGCTTAGCTTCTTTCAAATTCACTTGAAAACATCAAG
1 AAACCCTTGAAAA-TCAGGCTTAGCTTTTTTAAAATTCATTTGAAAATATCAAG
* ** * * *
3000343 AAACCCTTGAAAATCAGGCTTA-ATTTCTTTGAAAGCTGATCTAAAAATAATCAAG
1 AAACCCTTGAAAATCAGGCTTAGCTTT-TTT-AAAATTCATTTGAAAAT-ATCAAG
* * * *
3000398 AAA-CTTTCGAAAATC-GGACTTAG-TTTCTTTCAAATCCATTTGAAAACATCAAG
1 AAACCCTT-GAAAATCAGG-CTTAGCTTT-TTTAAAATTCATTTGAAAATATCAAG
* * ** *
3000451 AAACCCCTGAAAATCTGTATTAACTTCTTTGAAAATTCATTTGAAAATTCATTTGAAAATAATCA
1 AAACCCTTGAAAATCAGGCTT-A--GC--T-----TT--TTT-AAAATTCATTTGAAAAT-ATCA
3000516 AG
52 AG
* * * *
3000518 AAA-CTTATGAAAATC-GGACTTAG-TTTCTTTCAAAACTAATTTGAAAACATCAAG
1 AAACCCT-TGAAAATCAGG-CTTAGCTTT-TTT-AAAATTCATTTGAAAATATCAAG
* * * * * *
3000572 AAACCCTAG-AAATTATGCTTAACTTCTTTGAAAAATT-ATTTGAAAACATCAAG
1 AAACCCTTGAAAATCAGGCTTAGCTT-TTT-TAAAATTCATTTGAAAATATCAAG
* * *
3000625 AGACCCCT-AAAATATAGGCTTAGCTTCTTTT-AAATTCATTTGAAAACT-TCAAG
1 AAACCCTTGAAAAT-CAGGCTTAGCTT-TTTTAAAATTCATTTGAAAA-TATCAAG
* * * * * *
3000678 AAACCCCTGAAAAGCAGGCCTAACTTCTTTAAAAATTC--TT-----T-TGAAG
1 AAACCCTTGAAAATCAGGCTTAGCTT-TTTTAAAATTCATTTGAAAATATCAAG
* * *
3000724 AAA--CTTCCGAAAATC-GGACTCAG-TTTCTTTCAAAACTCATTTGAAAATTGTCAAG
1 AAACCCTT--GAAAATCAGG-CTTAGCTTT-TTT-AAAATTCATTTGAAAA-TATCAAG
* ** * *
3000779 AAA-CTTCTGAAAATCAGAATTAGTTTTTTTTAAAAGCTCATTTGAAAATAATCAAG
1 AAACCCT-TGAAAATCAGGCTTAG-CTTTTTTAAAA-TTCATTTGAAAAT-ATCAAG
* * * ** *
3000835 AAACTCC-TGAAAATTAGACTTAGTTTTTTTGAAAGGTCATTTAAAAATCATCAAG
1 AAAC-CCTTGAAAATCAGGCTTAGCTTTTTT-AAAATTCATTTGAAAAT-ATCAAG
* *
3000890 AAAATCCTTG-AAATAAGGCTTAG
1 -AAACCCTTGAAAATCAGGCTTAG
3000913 ATTCTAAAAA
Statistics
Matches: 563, Mismatches: 103, Indels: 125
0.71 0.13 0.16
Matches are distributed among these distances:
44 3 0.01
45 6 0.01
46 22 0.04
48 2 0.00
52 13 0.02
53 211 0.37
54 103 0.18
55 106 0.19
56 49 0.09
57 4 0.01
58 1 0.00
59 1 0.00
61 1 0.00
64 2 0.00
65 3 0.01
66 17 0.03
67 19 0.03
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (53 bp):
AAACCCTTGAAAATCAGGCTTAGCTTTTTTAAAATTCATTTGAAAATATCAAG
Found at i:3000242 original size:53 final size:53
Alignment explanation
Indices: 3000130--3000722 Score: 410
Period size: 53 Copynumber: 10.8 Consensus size: 53
3000120 ATCATAAAAA
* * * * *
3000130 AAACCCTTAAAAATTAGGCTTAGCTTTTTTAAAAATTCATTTGAAAATATCAAG
1 AAACCCTTGAAAATCAGGCTTAGCTTCTTT-CAAATTCATTTGAAAACATCAAG
*
3000184 AAACCCTTGAAAATCAGGCTTAGCTTCTTTCAAATTCATTTGAAAACATTAAG
1 AAACCCTTGAAAATCAGGCTTAGCTTCTTTCAAATTCATTTGAAAACATCAAG
* * * * * * *
3000237 AAACCCCTAAAAATTAGACGTAGCGTCTTTCAAATTCATTTGAAAATATCAAG
1 AAACCCTTGAAAATCAGGCTTAGCTTCTTTCAAATTCATTTGAAAACATCAAG
* * *
3000290 AAACCCCT-AAAATTTAGGCTTAGCTTCTTTCAAATTCACTTGAAAACATCAAG
1 AAACCCTTGAAAA-TCAGGCTTAGCTTCTTTCAAATTCATTTGAAAACATCAAG
** * * * * * *
3000343 AAACCCTTGAAAATCAGGCTTAATTTCTTTGAAAGCTGATCTAAAAATAATCAAG
1 AAACCCTTGAAAATCAGGCTTAGCTTCTTTCAAA-TTCATTTGAAAA-CATCAAG
* * *
3000398 AAA-CTTTCGAAAATC-GGACTTAGTTTCTTTCAAATCCATTTGAAAACATCAAG
1 AAACCCTT-GAAAATCAGG-CTTAGCTTCTTTCAAATTCATTTGAAAACATCAAG
* * ** * *
3000451 AAACCCCTGAAAATCTGTATTAACTTCTTTGAAAATTCATTTGAAAATTCATTTGAAAATAATCA
1 AAACCCTTGAAAATCAGGCTTAGCTTC--T-----TTC------AAATTCATTTGAAAA-CATCA
3000516 AG
52 AG
* * * *
3000518 AAA-CTTATGAAAATC-GGACTTAGTTTCTTTCAAAACTAATTTGAAAACATCAAG
1 AAACCCT-TGAAAATCAGG-CTTAGCTTCTTTC-AAATTCATTTGAAAACATCAAG
* * * * *
3000572 AAACCCTAG-AAATTATGCTTAACTTCTTTGAAAAATT-ATTTGAAAACATCAAG
1 AAACCCTTGAAAATCAGGCTTAGCTTCTTT--CAAATTCATTTGAAAACATCAAG
* * * * *
3000625 AGACCCCT-AAAATATAGGCTTAGCTTCTTTTAAATTCATTTGAAAACTTCAAG
1 AAACCCTTGAAAAT-CAGGCTTAGCTTCTTTCAAATTCATTTGAAAACATCAAG
* * * * * *
3000678 AAACCCCTGAAAAGCAGGCCTAACTTCTTTAAAAATTCTTTTGAA
1 AAACCCTTGAAAATCAGGCTTAGCTTCTTT-CAAATTCATTTGAA
3000723 GAAACTTCCG
Statistics
Matches: 428, Mismatches: 78, Indels: 66
0.75 0.14 0.12
Matches are distributed among these distances:
52 9 0.02
53 228 0.53
54 98 0.23
55 47 0.11
60 6 0.01
65 1 0.00
66 16 0.04
67 23 0.05
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.32
Consensus pattern (53 bp):
AAACCCTTGAAAATCAGGCTTAGCTTCTTTCAAATTCATTTGAAAACATCAAG
Found at i:3000441 original size:108 final size:113
Alignment explanation
Indices: 3000308--3000604 Score: 329
Period size: 120 Copynumber: 2.6 Consensus size: 113
3000298 AAAATTTAGG
* * * *
3000308 CTTAGCTTCTTTCAAATTCACTTGAAAACATCAAGAAACCCTTGAAAATCAGGCTTAATTTCTTT
1 CTTAGTTTCTTTCAAATCCATTTGAAAACATCAAGAAACCCTTGAAAATCAGGCTTAACTTCTTT
3000373 GAAA-GC-TG-A-TC-TAAAAATAATCAAGAAACTT-TCGAAAATCGGA
66 GAAATGCTTGAATTCTTAAAAATAATCAAGAAACTTAT-GAAAATCGGA
* * **
3000416 CTTAGTTTCTTTCAAATCCATTTGAAAACATCAAGAAACCCCTGAAAATCTGTATTAACTTCTTT
1 CTTAGTTTCTTTCAAATCCATTTGAAAACATCAAGAAACCCTTGAAAATCAGGCTTAACTTCTTT
* *
3000481 GAAAATTCATTTGAAAATTCATTTGAAAATAATCAAGAAACTTATGAAAATCGGA
66 G-AAATGC--TTG--AATTC--TTAAAAATAATCAAGAAACTTATGAAAATCGGA
* * * * *
3000536 CTTAGTTTCTTTCAAAACTAATTTGAAAACATCAAGAAACCCTAG-AAATTATGCTTAACTTCTT
1 CTTAGTTTCTTTCAAATC-CATTTGAAAACATCAAGAAACCCTTGAAAATCAGGCTTAACTTCTT
3000600 TGAAA
65 TGAAA
3000605 AATTATTTGA
Statistics
Matches: 156, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
108 58 0.37
109 3 0.02
110 1 0.01
113 2 0.01
116 1 0.01
117 2 0.01
119 3 0.02
120 62 0.40
121 24 0.15
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.32
Consensus pattern (113 bp):
CTTAGTTTCTTTCAAATCCATTTGAAAACATCAAGAAACCCTTGAAAATCAGGCTTAACTTCTTT
GAAATGCTTGAATTCTTAAAAATAATCAAGAAACTTATGAAAATCGGA
Found at i:3000495 original size:12 final size:12
Alignment explanation
Indices: 3000478--3000510 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
3000468 TATTAACTTC
3000478 TTTGAAAATTCA
1 TTTGAAAATTCA
3000490 TTTGAAAATTCA
1 TTTGAAAATTCA
3000502 TTTGAAAAT
1 TTTGAAAAT
3000511 AATCAAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.42, C:0.06, G:0.09, T:0.42
Consensus pattern (12 bp):
TTTGAAAATTCA
Found at i:3000594 original size:120 final size:120
Alignment explanation
Indices: 3000386--3000617 Score: 355
Period size: 120 Copynumber: 1.9 Consensus size: 120
3000376 AGCTGATCTA
* *
3000386 AAAATAATCAAGAAACTTTCGAAAATCGGACTTAGTTTCTTTCAAATCCATTTGAAAACATCAAG
1 AAAATAATCAAGAAACTTTCGAAAATCGGACTTAGTTTCTTTCAAAACAATTTGAAAACATCAAG
*
3000451 AAACCCCTGAAAATCTGTATTAACTTCTTTG-AAAATTCATTTGAAAATTCATTTG
66 AAACCCCTGAAAATATGTATTAACTTCTTTGAAAAATT-ATTTGAAAATTCATTTG
3000506 AAAATAATCAAGAAACTTAT-GAAAATCGGACTTAGTTTCTTTCAAAACTAATTTGAAAACATCA
1 AAAATAATCAAGAAACTT-TCGAAAATCGGACTTAGTTTCTTTCAAAAC-AATTTGAAAACATCA
* *
3000570 AGAAA-CCCTAGAAATTATG-CTTAACTTCTTTGAAAAATTATTTGAAAA
64 AGAAACCCCT-GAAAATATGTATTAACTTCTTTGAAAAATTATTTGAAAA
3000618 CATCAAGAGA
Statistics
Matches: 103, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
120 70 0.68
121 33 0.32
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (120 bp):
AAAATAATCAAGAAACTTTCGAAAATCGGACTTAGTTTCTTTCAAAACAATTTGAAAACATCAAG
AAACCCCTGAAAATATGTATTAACTTCTTTGAAAAATTATTTGAAAATTCATTTG
Found at i:3000838 original size:56 final size:56
Alignment explanation
Indices: 3000721--3000892 Score: 204
Period size: 55 Copynumber: 3.1 Consensus size: 56
3000711 AATTCTTTTG
* * * * * **
3000721 AAGAAACTTCCGAAAATCGGACTCAGTTTCTTTCAAAA-CTCATTTGAAAATTGTC
1 AAGAAACTTCTGAAAATCAGACTTAGTTTTTTTTAAAAGCTCATTTGAAAATAATC
*
3000776 AAGAAACTTCTGAAAATCAGAATTAGTTTTTTTTAAAAGCTCATTTGAAAATAATC
1 AAGAAACTTCTGAAAATCAGACTTAGTTTTTTTTAAAAGCTCATTTGAAAATAATC
* * * * * *
3000832 AAGAAACTCCTGAAAATTAGACTTAG-TTTTTTTGAAAGGTCATTTAAAAATCATC
1 AAGAAACTTCTGAAAATCAGACTTAGTTTTTTTTAAAAGCTCATTTGAAAATAATC
3000887 AAGAAA
1 AAGAAA
3000893 ATCCTTGAAA
Statistics
Matches: 101, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
55 63 0.62
56 38 0.38
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (56 bp):
AAGAAACTTCTGAAAATCAGACTTAGTTTTTTTTAAAAGCTCATTTGAAAATAATC
Found at i:3000912 original size:55 final size:56
Alignment explanation
Indices: 3000740--3000912 Score: 163
Period size: 55 Copynumber: 3.1 Consensus size: 56
3000730 CCGAAAATCG
* * * * ** * * *
3000740 GACTCAGTTTCTTTCAAAA-CTCATTTGAAAATTGTCAAGAAACTTCTGAAAATCA
1 GACTTAGTTTTTTTTAAAAGCTCATTTAAAAATAATCAAGAAAATCCTGAAAATAA
* * * *
3000795 GAATTAGTTTTTTTTAAAAGCTCATTTGAAAATAATCAAGAAACTCCTGAAAATTA
1 GACTTAGTTTTTTTTAAAAGCTCATTTAAAAATAATCAAGAAAATCCTGAAAATAA
* * *
3000851 GACTTAG-TTTTTTTGAAAGGTCATTTAAAAATCATCAAGAAAATCCTTG-AAATAA
1 GACTTAGTTTTTTTTAAAAGCTCATTTAAAAATAATCAAGAAAATCC-TGAAAATAA
*
3000906 GGCTTAG
1 GACTTAG
3000913 ATTCTAAAAA
Statistics
Matches: 100, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
55 60 0.60
56 40 0.40
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (56 bp):
GACTTAGTTTTTTTTAAAAGCTCATTTAAAAATAATCAAGAAAATCCTGAAAATAA
Found at i:3002921 original size:23 final size:21
Alignment explanation
Indices: 3002868--3002922 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 21
3002858 TGTTTGATAA
3002868 TTTTCTCTTTTTTTCTCTATTT
1 TTTTCT-TTTTTTTCTCTATTT
3002890 TTTTACTTTTTTCTTCTCT-TCTT
1 TTTT-CTTTTTT-TTCTCTAT-TT
3002913 TCTTTCTTTT
1 T-TTTCTTTT
3002923 ATCTAATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
22 10 0.34
23 16 0.55
24 3 0.10
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTCTTTTTTTTCTCTATTT
Found at i:3004381 original size:20 final size:22
Alignment explanation
Indices: 3004334--3004384 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
3004324 ATGCTCATGC
3004334 AAATGCAAAGATGCAAAAAATGG
1 AAATGCAAAGATGC-AAAAATGG
* *
3004357 GAATGCAAA-ATGC-AAAATGT
1 AAATGCAAAGATGCAAAAATGG
3004377 AAATGCAA
1 AAATGCAA
3004385 CAAAGGAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 13 0.52
22 4 0.16
23 8 0.32
ACGTcount: A:0.55, C:0.10, G:0.20, T:0.16
Consensus pattern (22 bp):
AAATGCAAAGATGCAAAAATGG
Found at i:3006562 original size:35 final size:35
Alignment explanation
Indices: 3006523--3006624 Score: 114
Period size: 35 Copynumber: 2.9 Consensus size: 35
3006513 ATTGGTGGTT
* * *
3006523 ATATAGACGTTAAATGGTGATAGAAGATGGTAATG
1 ATATAGGCGTAAAATGGTGATGGAAGATGGTAATG
*** * *
3006558 ATATAGGCGGGCAATGGTAATGGAAGATGGTGATG
1 ATATAGGCGTAAAATGGTGATGGAAGATGGTAATG
*
3006593 TTATAGGCGTGAAAATGGTGATGGAAGATGGT
1 ATATAGGCGT-AAAATGGTGATGGAAGATGGT
3006625 GATGTTTAGG
Statistics
Matches: 54, Mismatches: 12, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
35 36 0.67
36 18 0.33
ACGTcount: A:0.34, C:0.04, G:0.35, T:0.26
Consensus pattern (35 bp):
ATATAGGCGTAAAATGGTGATGGAAGATGGTAATG
Found at i:3006617 original size:36 final size:35
Alignment explanation
Indices: 3006534--3006634 Score: 132
Period size: 35 Copynumber: 2.9 Consensus size: 35
3006524 TATAGACGTT
* * * *
3006534 AAATGGTGATAGAAGATGGTAATGATATAGGCGGG
1 AAATGGTGATGGAAGATGGTGATGTTATAGGCGGA
* *
3006569 CAATGGTAATGGAAGATGGTGATGTTATAGGCGTGA
1 AAATGGTGATGGAAGATGGTGATGTTATAGGCG-GA
3006605 AAATGGTGATGGAAGATGGTGATGTT-TAGG
1 AAATGGTGATGGAAGATGGTGATGTTATAGG
3006635 TAGTATCTTA
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
35 32 0.56
36 25 0.44
ACGTcount: A:0.33, C:0.03, G:0.38, T:0.27
Consensus pattern (35 bp):
AAATGGTGATGGAAGATGGTGATGTTATAGGCGGA
Found at i:3009582 original size:11 final size:11
Alignment explanation
Indices: 3009566--3009607 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
3009556 TATGGTTGCT
3009566 GATTTGGTGAG
1 GATTTGGTGAG
**
3009577 GATTTGGTGCT
1 GATTTGGTGAG
3009588 GATTTGGTGAG
1 GATTTGGTGAG
3009599 GATTTGGTG
1 GATTTGGTG
3009608 CTAACTGTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.40
Consensus pattern (11 bp):
GATTTGGTGAG
Found at i:3009587 original size:22 final size:22
Alignment explanation
Indices: 3009562--3009609 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
3009552 AATGTATGGT
3009562 TGCTGATTTGGTGAGGATTTGG
1 TGCTGATTTGGTGAGGATTTGG
3009584 TGCTGATTTGGTGAGGATTTGG
1 TGCTGATTTGGTGAGGATTTGG
3009606 TGCT
1 TGCT
3009610 AACTGTAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.12, C:0.06, G:0.40, T:0.42
Consensus pattern (22 bp):
TGCTGATTTGGTGAGGATTTGG
Found at i:3011946 original size:64 final size:65
Alignment explanation
Indices: 3011878--3012039 Score: 236
Period size: 65 Copynumber: 2.5 Consensus size: 65
3011868 GGTGCACTAA
* * * * *
3011878 GTGTGCATCGATGCATAAAATACATTCTATGTTTTGAAT-AAGCCTAAGTTCATCGATGCATGGT
1 GTGTGCATCGATGCATAAAATGCATTCGATGTTTTCAATAAAACCTAAGTGCATCGATGCATGGT
* * *
3011942 GTGTGCATCGATGCAAAAAATGCATTCGATGTTTTCATTAAAACCTGAGTGCATCGATGCATGGT
1 GTGTGCATCGATGCATAAAATGCATTCGATGTTTTCAATAAAACCTAAGTGCATCGATGCATGGT
*
3012007 ATGTGCATCGATGCATAAAATGCATTCGATGTT
1 GTGTGCATCGATGCATAAAATGCATTCGATGTT
3012040 CAATTTATTC
Statistics
Matches: 87, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
64 34 0.39
65 53 0.61
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.33
Consensus pattern (65 bp):
GTGTGCATCGATGCATAAAATGCATTCGATGTTTTCAATAAAACCTAAGTGCATCGATGCATGGT
Found at i:3014739 original size:23 final size:22
Alignment explanation
Indices: 3014705--3014784 Score: 74
Period size: 23 Copynumber: 3.5 Consensus size: 22
3014695 ACCCGATCGA
*
3014705 TGCATTGATGCACATTCAAGGAG
1 TGCATCGATGCACATTCAAGG-G
* *
3014728 TGCATC-ACTGCACCTT-AATGG
1 TGCATCGA-TGCACATTCAAGGG
3014749 TGCATCGATGCACATTCAAAGGG
1 TGCATCGATGCACATTC-AAGGG
*
3014772 ATGCATTGATGCA
1 -TGCATCGATGCA
3014785 TTGTTAAGTG
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
21 14 0.30
22 5 0.11
23 16 0.35
24 11 0.24
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (22 bp):
TGCATCGATGCACATTCAAGGG
Found at i:3020672 original size:64 final size:64
Alignment explanation
Indices: 3020558--3020701 Score: 186
Period size: 64 Copynumber: 2.2 Consensus size: 64
3020548 GTGCACTAAG
*
3020558 TGTGCATCGATGCATAAAATGCATTCGATGTTTTGAATAAGCCTAAGTGCATCGATGCATGG-TT
1 TGTGCATCGATGCATAAAATGCATTCGATG-TTTCAATAAGCCTAAGTGCATCGATGCATGGATT
* **
3020622 TGTGCATCGATGCATAAAATGCATTCGATG-TTCAATTTATTC-AATGGTGCATCGATGCATGGA
1 TGTGCATCGATGCATAAAATGCATTCGATGTTTCAA-TAAGCCTAA--GTGCATCGATGCATGGA
3020685 TT
63 TT
*
3020687 GGTGCATCGATGCAT
1 TGTGCATCGATGCAT
3020702 TCCTTTGGAA
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
62 6 0.08
63 3 0.04
64 46 0.65
65 16 0.23
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (64 bp):
TGTGCATCGATGCATAAAATGCATTCGATGTTTCAATAAGCCTAAGTGCATCGATGCATGGATT
Found at i:3033452 original size:138 final size:138
Alignment explanation
Indices: 3033216--3033468 Score: 337
Period size: 138 Copynumber: 1.8 Consensus size: 138
3033206 ATAAATGGGA
* * *
3033216 TATAAAGGTTATCGATCGATTTTTTTTAAAGCATAACGGTGCATTTTCGTATCAGTACTATGTGT
1 TATAAAAGTTATCGATCGATTTTGTTTAAAGCATAACAGTGCATTTTCGTATCAGTACTATGTGT
* * * ** * *
3033281 ACTTTTGGCACTAAATGTGCAATCATGGTATTCATAATGAGTTTGTGAATTACCATTTCGATATA
66 ACTTTCGGCACTAAATGTGCAACCACGAAATTCATAATAAGTTTATGAATTACCATTTCGATATA
3033346 TAATTATG
131 TAATTATG
* * *
3033354 TATAAAAGTTATCGATCGATTTTGTTTAATGCATAACAGTTCA-TTTCGTATCAGTACTATTTGT
1 TATAAAAGTTATCGATCGATTTTGTTTAAAGCATAACAGTGCATTTTCGTATCAGTACTATGTGT
** * *
3033418 ACTTTCGGCACTATGTGTGTGACCCACGAAATTCATAATAAGTTTATGAAT
66 ACTTTCGGCACTAAATGTG-CAACCACGAAATTCATAATAAGTTTATGAAT
3033469 AACCGTATCA
Statistics
Matches: 97, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
137 36 0.37
138 61 0.63
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (138 bp):
TATAAAAGTTATCGATCGATTTTGTTTAAAGCATAACAGTGCATTTTCGTATCAGTACTATGTGT
ACTTTCGGCACTAAATGTGCAACCACGAAATTCATAATAAGTTTATGAATTACCATTTCGATATA
TAATTATG
Found at i:3033489 original size:54 final size:54
Alignment explanation
Indices: 3033422--3033684 Score: 370
Period size: 54 Copynumber: 4.9 Consensus size: 54
3033412 ATTTGTACTT
** *
3033422 TCGGCACTATGTGTGTGACCCACGAAATTCATAATAAGTTTATGAATAACCGTA
1 TCGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATAACCGTA
*
3033476 TCAGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATAACCGTA
1 TCGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATAACCGTA
* *
3033530 TCGGTACTATATGTGCAACCCAC-AGAATAT-ATAATGAGTTTATGAATAACCGTA
1 TCGGCACTATGTGTGCAACCCACGA-AAT-TCATAATGAGTTTATGAATAACCGTA
3033584 TCGGCACTATGTGTGCAACCCAC-ATAATTCATAATGAGTTTATGAATAACCGTA
1 TCGGCACTATGTGTGCAACCCACGA-AATTCATAATGAGTTTATGAATAACCGTA
* * * * * *
3033638 TCGACACTATGTGTGCAATCCATGGAATTCATAATAAGTTTGTGAAT
1 TCGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAAT
3033685 TTCCATTTCG
Statistics
Matches: 189, Mismatches: 16, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
53 2 0.01
54 186 0.98
55 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (54 bp):
TCGGCACTATGTGTGCAACCCACGAAATTCATAATGAGTTTATGAATAACCGTA
Found at i:3037324 original size:90 final size:90
Alignment explanation
Indices: 3037171--3037353 Score: 339
Period size: 90 Copynumber: 2.0 Consensus size: 90
3037161 TTGGGAAGTT
3037171 GAGAAAAGTTGAGGATAAAATCTTAAATATGGAAAAGTTGGGAACTCAAATGAAAGTGTTATGTA
1 GAGAAAAGTTGAGGATAAAATCTTAAATATGGAAAAGTTGGGAACTCAAATGAAAGTGTTATGTA
3037236 AAATTTGGATAAATTGGATAGAAAG
66 AAATTTGGATAAATTGGATAGAAAG
* *
3037261 GAGAAAAGTTGAGGATAAAATCTTAAATATGGAAAAGTTGGGAACTTAAATGAAAGTGTTATGTG
1 GAGAAAAGTTGAGGATAAAATCTTAAATATGGAAAAGTTGGGAACTCAAATGAAAGTGTTATGTA
*
3037326 AAGTTTGGATAAATTGGATAGAAAG
66 AAATTTGGATAAATTGGATAGAAAG
3037351 GAG
1 GAG
3037354 TTGGAATGGT
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
90 90 1.00
ACGTcount: A:0.44, C:0.03, G:0.26, T:0.27
Consensus pattern (90 bp):
GAGAAAAGTTGAGGATAAAATCTTAAATATGGAAAAGTTGGGAACTCAAATGAAAGTGTTATGTA
AAATTTGGATAAATTGGATAGAAAG
Found at i:3041120 original size:2 final size:2
Alignment explanation
Indices: 3041113--3041151 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
3041103 TTCCCCGAAT
* *
3041113 GA GA GA GA GA TA GA GA GA GA GA TA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
3041152 TAATAGCTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.46, T:0.05
Consensus pattern (2 bp):
GA
Found at i:3041130 original size:12 final size:12
Alignment explanation
Indices: 3041113--3041151 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
3041103 TTCCCCGAAT
3041113 GAGAGAGAGATA
1 GAGAGAGAGATA
3041125 GAGAGAGAGATA
1 GAGAGAGAGATA
*
3041137 GAGAGAGAGAGA
1 GAGAGAGAGATA
3041149 GAG
1 GAG
3041152 TAATAGCTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.46, T:0.05
Consensus pattern (12 bp):
GAGAGAGAGATA
Found at i:3041495 original size:19 final size:19
Alignment explanation
Indices: 3041471--3041516 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
3041461 TCTCTCTCTC
3041471 TCCCCTTTTGAAAAAGGTT
1 TCCCCTTTTGAAAAAGGTT
*
3041490 TCCCCTTTTGAAAATGGTT
1 TCCCCTTTTGAAAAAGGTT
3041509 TCCCCTTT
1 TCCCCTTT
3041517 CTTTGGTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.20, C:0.26, G:0.13, T:0.41
Consensus pattern (19 bp):
TCCCCTTTTGAAAAAGGTT
Found at i:3041930 original size:23 final size:24
Alignment explanation
Indices: 3041883--3041930 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
3041873 GTGGATCCTC
*
3041883 TTGGGTCGTGCAACTGGGCTCTAG
1 TTGGGTCGTGCAACTGGGCTATAG
* *
3041907 TTGGGTC-TGCTATTGGGCTATAG
1 TTGGGTCGTGCAACTGGGCTATAG
3041930 T
1 T
3041931 CTTGGGCTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.12, C:0.17, G:0.35, T:0.35
Consensus pattern (24 bp):
TTGGGTCGTGCAACTGGGCTATAG
Found at i:3042038 original size:3 final size:3
Alignment explanation
Indices: 3042023--3042073 Score: 75
Period size: 3 Copynumber: 16.7 Consensus size: 3
3042013 AATGTAAAAT
* *
3042023 ATA ATA ATT ATA ATA ATA ATA GTAA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
3042069 ATA AT
1 ATA AT
3042074 TTAAAACCCT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 41 0.95
4 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:3042551 original size:139 final size:139
Alignment explanation
Indices: 3042296--3042983 Score: 603
Period size: 139 Copynumber: 4.9 Consensus size: 139
3042286 GAAAGTCTGG
* * * * * *
3042296 TTATCTGAGGATGACGTTGTTCATACGTGTTAAGGACATCTGCTCGGTGGACGGCATTGTTCCTA
1 TTATCTGAGGATGACGTTGCTCATACGTGTTAAGGAGATCTGATCAGTGGATGACATTGTTCCTA
* * *
3042361 CGTGATGAGGACGTCTAGCCATCTTTAGGGATAATTTGGAGCCAACATGGTTCCTACGTAATGAG
66 CGTGATGAGGACGTCTAGCCGTCTTTAAGGATAATTTGGAGACAACATGGTTCCTACGTAATGAG
3042426 GAAGTTTGA
131 GAAGTTTGA
* * * * * * *
3042435 TTATATGAGGATGGCATTGCTCATGCGCGTTAAGGAGATCT-AGTCAGTGGATGGCATTCTTCCT
1 TTATCTGAGGATGACGTTGCTCATACGTGTTAAGGAGATCTGA-TCAGTGGATGACATTGTTCCT
* * * *
3042499 ACGTGATGAGGATGTCTATCCGTCTTTAAAGATAAATTGGAGACAACATGGTTCCTACG-AGATG
65 ACGTGATGAGGACGTCTAGCCGTCTTTAAGGATAATTTGGAGACAACATGGTTCCTACGTA-ATG
* *
3042563 AGGAAGTCTGG
129 AGGAAGTTTGA
* * * * * * * * *
3042574 TTATCTGATGATGACGCTGCTCCTACGTGTTGAGGAGATGTGATCACTTGATGATATTGTTCTTA
1 TTATCTGAGGATGACGTTGCTCATACGTGTTAAGGAGATCTGATCAGTGGATGACATTGTTCCTA
* * * * * ** * *
3042639 CGTGACGAGGACTTCTAGTCGTCTTTAAGGATAATTTGGAGACAACAAGGTTCCCATATGATAAG
66 CGTGATGAGGACGTCTAGCCGTCTTTAAGGATAATTTGGAGACAACATGGTTCCTACGTAATGAG
*
3042704 GAAGTTCGA
131 GAAGTTTGA
* * * * * *
3042713 TT-TCCTAAGGATGACGTTGCTCCTACGTGTTGAGGAGATATGGTCGGTGGATGACATTGTTCCT
1 TTAT-CTGAGGATGACGTTGCTCATACGTGTTAAGGAGATCTGATCAGTGGATGACATTGTTCCT
* * * * ** * *
3042777 ACGTTATTAGGACCTCTAGCCGTCTTTAGGGATAATTTGGAGACAACACAGTTCCTATGTGATGA
65 ACGTGATGAGGACGTCTAGCCGTCTTTAAGGATAATTTGGAGACAACATGGTTCCTACGTAATGA
** *
3042842 CAAAGTCTGA
130 GGAAGTTTGA
** * * * * * * * * *
3042852 TTGCCTAAGGATGACGCTACTCCTACGTGTTGAGGATATCT-AGTCGGTGGACGACATTATTCCT
1 TTATCTGAGGATGACGTTGCTCATACGTGTTAAGGAGATCTGA-TCAGTGGATGACATTGTTCCT
* * * * ** * *
3042916 AAC-TGATAAGGACATCTAACCATCTTTCTGGATAATTTGGAGACAACACGGTTCCTACGTGATG
65 -ACGTGATGAGGACGTCTAGCCGTCTTTAAGGATAATTTGGAGACAACATGGTTCCTACGTAATG
3042980 AGGA
129 AGGA
3042984 CGTCTATCCG
Statistics
Matches: 445, Mismatches: 96, Indels: 16
0.80 0.17 0.03
Matches are distributed among these distances:
138 2 0.00
139 440 0.99
140 3 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (139 bp):
TTATCTGAGGATGACGTTGCTCATACGTGTTAAGGAGATCTGATCAGTGGATGACATTGTTCCTA
CGTGATGAGGACGTCTAGCCGTCTTTAAGGATAATTTGGAGACAACATGGTTCCTACGTAATGAG
GAAGTTTGA
Found at i:3042802 original size:278 final size:278
Alignment explanation
Indices: 3042283--3042970 Score: 689
Period size: 278 Copynumber: 2.5 Consensus size: 278
3042273 TTCTACCTGG
* * * * * **
3042283 TGAGAAAGTCTGGTTATCTGAGGATGACGTTGTTCATACGTGTTAAGGACATCTGCTCGGTGGAC
1 TGAGAAAGTCTGGTTATCTGAGGATGACGCTGCTCCTACGTGTTGAGGACATCTGATCACTGGAC
* * * * *
3042348 GGCATTGTTCCTACGTGATGAGGACGTCTAGCCATCTTTAGGGATAATTTGGAGCCAACATGGTT
66 GACATTGTTCCTACGTGACGAGGACGTCTAGCCATCTTTAAGGATAATTTGGAGACAACAAGGTT
* * * * * * * *
3042413 CCTACGTAATGAGGAAGTTTGATTATATGAGGATGGCATTGCTCATGCGCGTTAAGGAGATCTAG
131 CCCACATAATAAGGAAGTTCGATTATATAAGGATGACATTGCTCATACGCGTTAAGGAGATATAG
* ** *
3042478 TCAGTGGATGGCATTCTTCCTACGTGATGAGGATGTCTATCCGTCTTTAAAGATAAATTGGAGAC
196 TCAGTGGATGACATTCTTCCTACGTGATGAGGACCTCTAGCCGTCTTTAAAGATAAATTGGAGAC
**
3042543 AACATGGTTCCTACGAGA
261 AACACAGTTCCTACGAGA
* * * * * *
3042561 TGAGGAAGTCTGGTTATCTGATGATGACGCTGCTCCTACGTGTTGAGGAGATGTGATCACTTGAT
1 TGAGAAAGTCTGGTTATCTGAGGATGACGCTGCTCCTACGTGTTGAGGACATCTGATCACTGGAC
* * * * *
3042626 GATATTGTTCTTACGTGACGAGGACTTCTAGTCGTCTTTAAGGATAATTTGGAGACAACAAGGTT
66 GACATTGTTCCTACGTGACGAGGACGTCTAGCCATCTTTAAGGATAATTTGGAGACAACAAGGTT
* * * * * * * *
3042691 CCCATATGATAAGGAAGTTCGATT-TCCTAAGGATGACGTTGCTCCTACGTGTTGAGGAGATATG
131 CCCACATAATAAGGAAGTTCGATTAT-ATAAGGATGACATTGCTCATACGCGTTAAGGAGATATA
* * * * ** *
3042755 GTCGGTGGATGACATTGTTCCTACGTTATTAGGACCTCTAGCCGTCTTTAGGGATAATTTGGAGA
195 GTCAGTGGATGACATTCTTCCTACGTGATGAGGACCTCTAGCCGTCTTTAAAGATAAATTGGAGA
* *
3042820 CAACACAGTTCCTATGTGA
260 CAACACAGTTCCTACGAGA
* * ** * * * **
3042839 TGACAAAGTCTGATTGCCTAAGGATGACGCTACTCCTACGTGTTGAGGATATCT-AGTCGGTGGA
1 TGAGAAAGTCTGGTTATCTGAGGATGACGCTGCTCCTACGTGTTGAGGACATCTGA-TCACTGGA
* ** * * ** *
3042903 CGACATTATTCCTAAC-TGATAAGGACATCTAACCATCTTTCTGGATAATTTGGAGACAACACGG
65 CGACATTGTTCCT-ACGTGACGAGGACGTCTAGCCATCTTTAAGGATAATTTGGAGACAACAAGG
3042967 TTCC
129 TTCC
3042971 TACGTGATGA
Statistics
Matches: 327, Mismatches: 80, Indels: 6
0.79 0.19 0.01
Matches are distributed among these distances:
277 2 0.01
278 323 0.99
279 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (278 bp):
TGAGAAAGTCTGGTTATCTGAGGATGACGCTGCTCCTACGTGTTGAGGACATCTGATCACTGGAC
GACATTGTTCCTACGTGACGAGGACGTCTAGCCATCTTTAAGGATAATTTGGAGACAACAAGGTT
CCCACATAATAAGGAAGTTCGATTATATAAGGATGACATTGCTCATACGCGTTAAGGAGATATAG
TCAGTGGATGACATTCTTCCTACGTGATGAGGACCTCTAGCCGTCTTTAAAGATAAATTGGAGAC
AACACAGTTCCTACGAGA
Found at i:3042998 original size:56 final size:56
Alignment explanation
Indices: 3042911--3043044 Score: 171
Period size: 56 Copynumber: 2.4 Consensus size: 56
3042901 GACGACATTA
* * ** *
3042911 TTCCTAAC-TGATAAGGACATCTAACCATCTTTCTGGATAATTTGGAGACAACACGG
1 TTCCT-ACGTGATGAGGACGTCTAACCATCTTTAGGGATAATTTGGAGACAACACAG
* * *
3042967 TTCCTACGTGATGAGGACGTCTATCCGTCTTTAGGGATAATTTGGAGCCAACACAG
1 TTCCTACGTGATGAGGACGTCTAACCATCTTTAGGGATAATTTGGAGACAACACAG
*
3043023 TTCCTACGTGATGAGGAAGTCT
1 TTCCTACGTGATGAGGACGTCT
3043045 GGTTATCTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
55 2 0.03
56 66 0.97
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (56 bp):
TTCCTACGTGATGAGGACGTCTAACCATCTTTAGGGATAATTTGGAGACAACACAG
Found at i:3043106 original size:195 final size:195
Alignment explanation
Indices: 3042771--3043159 Score: 517
Period size: 195 Copynumber: 2.0 Consensus size: 195
3042761 GGATGACATT
* * *
3042771 GTTCCTACGTTATTAGGACCTCTAGCCGTCTTTAGGGATAATTTGGAGACAACACAGTTCCTATG
1 GTTCCTACGTGATGAGGACCTCTAGCCGTCTTTAGGGATAATTTGGAGACAACACAGTTCCTACG
* * ** * *
3042836 TGATGACAAAGTCTGATTGCCTAAGGATGACGCTACTCCTACGTGTTGAGGATATCTAGTCGGTG
66 TGATGACAAAGTCTGATTACCTAAGGATGAAGCTACTCCTACGCATTGAGGAGATCTAGTCAGTG
* * ** *
3042901 GACGACATTATTCCTAACTGATAAGGACATCTAACCATCTTTCTGGATAATTTGGAGACAACACG
131 GACAACATTATTCCTAACTAATAAGGACATCTAACCATCTTTAGGGATAATTCGGAGACAACACG
* * *
3042966 GTTCCTACGTGATGAGGACGTCTATCCGTCTTTAGGGATAATTTGGAGCCAACACAGTTCCTACG
1 GTTCCTACGTGATGAGGACCTCTAGCCGTCTTTAGGGATAATTTGGAGACAACACAGTTCCTACG
** * * * * *
3043031 TGATGAGGAAGTCTGGTTATCTAAGGATGAAGCTACTCCTATGCATTTAGGAGATCTGGTCAGTG
66 TGATGACAAAGTCTGATTACCTAAGGATGAAGCTACTCCTACGCATTGAGGAGATCTAGTCAGTG
** * * *
3043096 GACAACATTATTCCTATGTAATGAGGACATCTAGCCATCTTTAGGGATAATTCGGAGAGAACAC
131 GACAACATTATTCCTAACTAATAAGGACATCTAACCATCTTTAGGGATAATTCGGAGACAACAC
3043160 AGTATTTACG
Statistics
Matches: 165, Mismatches: 29, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
195 165 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (195 bp):
GTTCCTACGTGATGAGGACCTCTAGCCGTCTTTAGGGATAATTTGGAGACAACACAGTTCCTACG
TGATGACAAAGTCTGATTACCTAAGGATGAAGCTACTCCTACGCATTGAGGAGATCTAGTCAGTG
GACAACATTATTCCTAACTAATAAGGACATCTAACCATCTTTAGGGATAATTCGGAGACAACACG
Found at i:3043248 original size:334 final size:334
Alignment explanation
Indices: 3042632--3043322 Score: 784
Period size: 334 Copynumber: 2.1 Consensus size: 334
3042622 TGATGATATT
* * * *
3042632 GTTCTTACGTGACGAGGACTTCTAGTCGTCTTTAAGGATAATTTGGAGACAACAAGGTTCCCATA
1 GTTCCTACGTGATGAGGACGTCTAGTCGTCTTTAAGGATAATTTGGAGACAACAAGGTTCCCACA
* * * ** *
3042697 TGATAAGGAAGTTCGATTTCCTAAGGATGACGTTGCTCCTACGTGTTGAGGAGATATGGTCGGTG
66 TGATAAGGAAGTTCGATTTCCTAAGGATGAAGCTACTCCTACGCATTGAGGAGATATGGTCAGTG
** * * * * * *
3042762 GATGACATTGTTCCTACGTTATTAGGACCTCTAGCCGTCTTTAGGGATAATTTGGAGACAACACA
131 GACAACATTATTCCTACGTAATGAGGACATCTAGCCATCTTTAGGGATAATTCGGAGACAACACA
* * * * * *
3042827 GTTCCTATGTGATGACAAAGTCTGATTGCCTAAGGATGACGCTACTCCTACGTGTTGAGGATATC
196 GTTCCTACGTGATAACAAAGTCTGATTACCTAAGGATGACGCTACTCCTACGTGTTAAGGAGATA
* ** *
3042892 TAGTCGGTGGACGACATTATTCCTA-ACTGATAAGGACATCTAACCATCTTTCTGGATAATTTGG
261 TAGTCAGTGGACGACATTATTCCTACA-TGATAAGGACATCTAACCATCTTTAGGGATAACTTGG
3042956 AGACAACACG
325 AGACAACACG
* * *
3042966 GTTCCTACGTGATGAGGACGTCTA-TCCGTCTTTAGGGATAATTTGGAGCCAACACA-GTTCCTA
1 GTTCCTACGTGATGAGGACGTCTAGT-CGTCTTTAAGGATAATTTGGAGACAACA-AGGTTCCCA
* * * * * *
3043029 CGTGATGAGGAAG-TCTGGTTAT-CTAAGGATGAAGCTACTCCTATGCATTTAGGAGATCTGGTC
64 CATGATAAGGAAGTTC-GATT-TCCTAAGGATGAAGCTACTCCTACGCATTGAGGAGATATGGTC
* *
3043092 AGTGGACAACATTATTCCTATGTAATGAGGACATCTAGCCATCTTTAGGGATAATTCGGAGAGAA
127 AGTGGACAACATTATTCCTACGTAATGAGGACATCTAGCCATCTTTAGGGATAATTCGGAGACAA
* ** * * * *
3043157 CACAGTAT-TTACGTGATAAGGAAGTCTTG-TTATCTGAGGATTACGCTGCTCCTACGTGTTAAG
192 CACAGT-TCCTACGTGATAACAAAGTC-TGATTACCTAAGGATGACGCTACTCCTACGTGTTAAG
* * * ** *
3043220 GAGATATGGTCAGTGGACGACGTTATTCCTACATGATGAGGATGTCTAGCCATCTTTAGGGATAA
255 GAGATATAGTCAGTGGACGACATTATTCCTACATGATAAGGACATCTAACCATCTTTAGGGATAA
3043285 CTTGGAGACAACACG
320 CTTGGAGACAACACG
* *
3043300 GTACCTACGTGATGAGGAAGTCT
1 GTTCCTACGTGATGAGGACGTCT
3043323 GATTTCCAGG
Statistics
Matches: 296, Mismatches: 54, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
333 3 0.01
334 287 0.97
335 6 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (334 bp):
GTTCCTACGTGATGAGGACGTCTAGTCGTCTTTAAGGATAATTTGGAGACAACAAGGTTCCCACA
TGATAAGGAAGTTCGATTTCCTAAGGATGAAGCTACTCCTACGCATTGAGGAGATATGGTCAGTG
GACAACATTATTCCTACGTAATGAGGACATCTAGCCATCTTTAGGGATAATTCGGAGACAACACA
GTTCCTACGTGATAACAAAGTCTGATTACCTAAGGATGACGCTACTCCTACGTGTTAAGGAGATA
TAGTCAGTGGACGACATTATTCCTACATGATAAGGACATCTAACCATCTTTAGGGATAACTTGGA
GACAACACG
Done.