genome.fa.s1114.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001114.1 Hibiscus syriacus cultivar Beakdansim tig00002198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109882

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91--136	24	1.9	24	86	8	67	41	2	13	43	1.55
1239--1281	19	2.4	17	88	7	59	20	4	0	74	1.00
1239--1284	18	2.5	19	77	19	53	23	4	0	71	1.03
1322--1396	28	2.7	27	80	10	71	25	9	0	65	1.22
1473--1541	36	1.9	36	96	0	129	13	11	2	72	1.23
1531--1590	27	2.2	26	82	8	75	28	5	1	65	1.23
3231--3285	27	2.0	27	89	6	85	41	21	14	21	1.89
13949--13994	22	2.1	22	83	0	56	69	2	0	28	1.00
14008--14130	29	4.4	28	75	17	96	50	13	1	34	1.51
15610--15668	21	2.7	22	76	5	75	22	25	20	32	1.98
15657--15708	20	2.6	20	90	0	86	40	15	19	25	1.90
15700--15796	20	4.8	20	89	0	131	26	23	19	29	1.98
16625--16678	24	2.2	24	93	0	90	20	18	20	40	1.91
16868--16904	14	2.6	14	91	4	56	51	21	21	5	1.68
18943--18977	18	1.9	18	94	0	61	54	25	2	17	1.57
19037--19306	140	1.9	140	96	0	504	28	13	15	42	1.85
19277--19570	20	15.6	20	69	15	171	32	20	19	26	1.97
19336--19570	94	2.5	94	86	4	330	31	20	20	26	1.98
19359--19501	74	1.9	74	84	5	191	31	20	20	27	1.98
19560--19617	20	2.9	20	81	0	71	12	15	25	46	1.80
19716--19777	14	4.3	14	77	6	61	46	14	0	38	1.45
21759--21829	20	3.5	20	94	0	115	36	22	19	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23816--23922	20	5.4	20	83	3	110	45	22	16	14	1.84
23935--23973	19	2.0	20	90	5	62	15	23	17	43	1.87
24524--24637	20	5.7	20	90	0	165	26	22	26	24	2.00
26336--26366	2	16.0	2	93	6	55	48	0	0	51	1.00
29094--29132	2	20.0	2	94	5	71	48	0	0	51	1.00
30734--30802	35	2.0	35	97	0	129	46	4	31	17	1.68
32258--32289	2	16.5	2	93	6	57	50	0	0	50	1.00
33890--33958	35	2.0	35	100	0	138	44	5	31	17	1.72
38879--38933	24	2.3	24	78	3	67	25	14	12	47	1.80
40480--40509	2	15.0	2	100	0	60	50	0	0	50	1.00
42843--42960	60	2.0	60	83	6	150	30	20	16	32	1.95
43745--43817	4	18.5	4	75	2	58	36	1	10	50	1.46
43747--43816	6	11.8	6	83	8	90	35	1	11	51	1.47
47440--47554	60	1.9	60	82	7	144	32	16	17	33	1.92
49337--49469	60	2.2	60	78	6	137	37	17	14	30	1.89
49682--49816	60	2.2	60	84	0	180	29	12	22	34	1.91
49986--50062	38	2.0	38	92	5	129	36	18	14	31	1.90
52339--52450	20	5.4	20	67	15	59	37	22	18	21	1.94
52398--52673	20	13.6	20	77	8	229	37	25	18	18	1.93
52398--52670	81	3.4	81	86	5	313	37	25	18	18	1.93
52459--52670	41	5.2	41	93	1	347	37	25	18	18	1.93
53977--54012	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54114--54161	19	2.5	19	82	3	69	43	18	22	14	1.87
54210--54294	33	2.5	33	90	1	125	14	22	18	44	1.85
54277--54331	20	2.8	20	88	0	74	23	21	21	32	1.98
54548--54585	19	2.0	19	94	0	67	47	13	21	18	1.82
54590--54631	19	2.2	19	95	0	75	16	21	14	47	1.82
54640--54694	20	2.8	20	88	0	83	23	21	21	32	1.98
57110--57163	24	2.2	24	93	0	90	40	20	18	20	1.91
57110--57177	24	2.8	24	84	0	64	38	20	17	23	1.93
58012--58226	20	10.7	18	74	16	101	20	18	23	38	1.93
58016--58226	60	3.5	59	85	4	262	20	18	23	37	1.94
58014--58226	40	5.3	41	83	0	198	20	18	23	38	1.94
58340--58390	20	2.5	20	78	6	59	15	17	33	33	1.92
62523--62564	11	3.8	11	84	12	50	2	16	0	80	0.81
62520--62567	20	2.5	19	76	6	53	4	16	0	79	0.89
67174--67431	64	4.2	63	71	13	196	25	19	6	48	1.73
67139--67431	124	2.4	124	87	2	419	25	20	6	47	1.74
67162--67431	30	8.7	30	76	11	224	25	19	6	48	1.72
72614--72864	30	8.0	31	72	14	169	23	19	7	49	1.73
73687--73712	10	2.6	10	100	0	52	61	23	7	7	1.49
78102--78131	2	15.0	2	100	0	60	50	0	0	50	1.00
78213--78251	2	19.5	2	94	0	69	51	2	0	46	1.14
82172--82239	34	2.0	34	85	5	93	27	23	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89668--89730	23	2.7	23	72	0	63	17	25	23	33	1.96
97823--97908	37	2.3	37	91	0	145	40	22	16	20	1.91
100211--100412	57	3.5	57	88	2	291	33	18	11	36	1.87
100835--100884	20	2.5	20	84	9	59	22	26	14	38	1.91
103521--103588	22	3.2	22	62	29	56	44	13	5	36	1.68
103504--103589	42	2.0	42	97	0	163	41	12	6	38	1.70
104262--104309	24	2.0	24	92	4	80	41	12	14	31	1.83

Tables:   1

The End!