Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001115.1 Hibiscus syriacus cultivar Beakdansim tig00002199_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63909

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2207--2242
17
2.1
17
94
0
63
38
11
5
44
1.63
2767--2833
16
4.2
17
81
7
70
38
11
7
41
1.70
8359--8394
17
2.1
17
94
0
63
36
13
5
44
1.68
13800--13842
21
2.0
21
90
0
68
55
11
2
30
1.48
14127--14162
18
1.9
19
88
5
56
58
16
0
25
1.38
16115--16663
55
10.0
55
83
3
613
30
20
18
31
1.96
16111--16663
165
3.3
165
85
2
743
30
20
18
31
1.96
16667--16849
36
5.1
36
87
2
242
24
20
16
38
1.93
20582--20619
19
2.0
20
89
5
60
52
10
15
21
1.72
24839--24925
37
2.4
37
90
0
129
31
26
11
31
1.91
31689--31751
19
3.3
18
70
16
56
6
14
12
66
1.42
31685--31771
38
2.3
37
92
2
138
6
12
12
67
1.40
35387--35423
11
3.4
11
85
14
58
40
10
8
40
1.70
35382--35423
22
1.9
22
100
0
84
40
9
9
40
1.70
35940--35967
2
14.0
2
100
0
56
50
0
0
50
1.00
36719--36746
12
2.3
12
100
0
56
14
7
25
53
1.66
42989--43018
15
2.0
15
100
0
60
20
40
20
20
1.92
44281--44328
19
2.5
20
82
3
62
52
6
12
29
1.63
45546--45605
30
2.0
31
93
6
106
33
6
16
43
1.74
45764--45793
15
2.0
15
93
0
51
20
36
20
23
1.95
45841--45881
21
2.0
21
95
0
73
31
19
26
21
1.97
49655--49835
60
3.0
59
80
2
209
36
4
22
35
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53199--53323
48
2.6
48
85
0
169
36
25
12
25
1.90
54065--54116
22
2.4
21
75
6
59
36
26
0
36
1.57
58446--58548
35
2.9
35
87
7
154
29
4
35
30
1.78
61764--61811
24
2.0
24
84
8
62
66
0
20
12
1.24
62435--62488
12
4.5
12
72
23
51
31
5
33
29
1.80
62416--62511
31
2.9
35
82
13
114
30
5
34
30
1.79

Tables:   1

The End!