Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001116.1 Hibiscus syriacus cultivar Beakdansim tig00002208_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53774
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Found at i:163 original size:17 final size:17
Alignment explanation
Indices: 141--178 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
131 GTAGTTCATT
141 ACTAGTTCATTCATCAA
1 ACTAGTTCATTCATCAA
* *
158 ACTAGTTCATTTATTAA
1 ACTAGTTCATTCATCAA
175 ACTA
1 ACTA
179 ACTTTAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.37, C:0.18, G:0.05, T:0.39
Consensus pattern (17 bp):
ACTAGTTCATTCATCAA
Found at i:3898 original size:24 final size:25
Alignment explanation
Indices: 3852--3899 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
3842 TTTAAATGAC
* *
3852 TTTTTCATATATATTATTTCATATT
1 TTTTTCATATATAATATTACATATT
*
3877 TTTTTCATATGTAATA-TACATAT
1 TTTTTCATATATAATATTACATAT
3900 CAAAGTTGAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.58
Consensus pattern (25 bp):
TTTTTCATATATAATATTACATATT
Found at i:6234 original size:33 final size:33
Alignment explanation
Indices: 6192--6262 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
6182 AATGAGTATG
* *
6192 ACAAAAGTGTGTTCAGTTCGTTTATGTTCACGA
1 ACAAAAGTGTATTCAGATCGTTTATGTTCACGA
*
6225 ACAAAAGTGTATTCAGATCGTTTATGTTCATGA
1 ACAAAAGTGTATTCAGATCGTTTATGTTCACGA
6258 ACAAA
1 ACAAA
6263 GCATCTATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (33 bp):
ACAAAAGTGTATTCAGATCGTTTATGTTCACGA
Found at i:8924 original size:5 final size:5
Alignment explanation
Indices: 8914--8938 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8904 AATGAATTTA
8914 ATGCC ATGCC ATGCC ATGCC ATGCC
1 ATGCC ATGCC ATGCC ATGCC ATGCC
8939 TCTTAGACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.40, G:0.20, T:0.20
Consensus pattern (5 bp):
ATGCC
Found at i:12287 original size:18 final size:18
Alignment explanation
Indices: 12264--12299 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
12254 ACTATCAGTT
12264 TTGGAAATTGCAGCAGCA
1 TTGGAAATTGCAGCAGCA
12282 TTGGAAATTGCAGCAGCA
1 TTGGAAATTGCAGCAGCA
12300 GGGAATGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (18 bp):
TTGGAAATTGCAGCAGCA
Found at i:17804 original size:29 final size:29
Alignment explanation
Indices: 17762--17832 Score: 142
Period size: 29 Copynumber: 2.4 Consensus size: 29
17752 AAAAATTATC
17762 ATTTTAATTTTTATTATTCTTATAAAAAT
1 ATTTTAATTTTTATTATTCTTATAAAAAT
17791 ATTTTAATTTTTATTATTCTTATAAAAAT
1 ATTTTAATTTTTATTATTCTTATAAAAAT
17820 ATTTTAATTTTTA
1 ATTTTAATTTTTA
17833 AATAAAAATC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (29 bp):
ATTTTAATTTTTATTATTCTTATAAAAAT
Found at i:17830 original size:35 final size:32
Alignment explanation
Indices: 17749--17832 Score: 108
Period size: 29 Copynumber: 2.8 Consensus size: 32
17739 CCAAAGTTGC
17749 ATAAAAAATTATCATTTTAATTTTTATTATTCTT
1 ATAAAAAATT-T-ATTTTAATTTTTATTATTCTT
17783 AT-AAAAA--TATTTTAATTTTTATTATTCTT
1 ATAAAAAATTTATTTTAATTTTTATTATTCTT
17812 AT-AAAAA--TATTTTAATTTTTA
1 ATAAAAAATTTATTTTAATTTTTA
17833 AATAAAAATC
Statistics
Matches: 50, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
29 42 0.84
30 1 0.02
33 5 0.10
34 2 0.04
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (32 bp):
ATAAAAAATTTATTTTAATTTTTATTATTCTT
Found at i:18769 original size:12 final size:13
Alignment explanation
Indices: 18754--18782 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
18744 TATTTTTATT
18754 TTTTAAAAC-CTA
1 TTTTAAAACTCTA
18766 TTTTAAAACTCTA
1 TTTTAAAACTCTA
18779 TTTT
1 TTTT
18783 CTTAACTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTTAAAACTCTA
Found at i:20058 original size:2 final size:2
Alignment explanation
Indices: 20014--20042 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
20004 TGGAAAAAAT
20014 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20043 TTTTAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24244 original size:20 final size:20
Alignment explanation
Indices: 24194--24231 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
24184 TTTTGAGTTA
24194 ATTAAAATATGTTTAAAGTG
1 ATTAAAATATGTTTAAAGTG
24214 ATTAAAATATGTTTAAAG
1 ATTAAAATATGTTTAAAG
24232 CTTTTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.39
Consensus pattern (20 bp):
ATTAAAATATGTTTAAAGTG
Found at i:24321 original size:19 final size:20
Alignment explanation
Indices: 24293--24365 Score: 69
Period size: 19 Copynumber: 3.7 Consensus size: 20
24283 TAATGTTCAT
*
24293 AGTTTGGAAACTTT-GTAAG
1 AGTTTCGAAACTTTAGTAAG
* *
24312 AGTTTTGAAACTTTTATTAAG
1 AGTTTCGAAAC-TTTAGTAAG
* *
24333 AGTTTCGAAACTTTA-CAAA
1 AGTTTCGAAACTTTAGTAAG
*
24352 AGTTTCGGAACTTT
1 AGTTTCGAAACTTT
24366 GCACCCATAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
19 25 0.54
20 7 0.15
21 14 0.30
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.40
Consensus pattern (20 bp):
AGTTTCGAAACTTTAGTAAG
Found at i:27789 original size:321 final size:321
Alignment explanation
Indices: 27159--27802 Score: 1123
Period size: 321 Copynumber: 2.0 Consensus size: 321
27149 TCATTACACT
* *
27159 AACCAAAATTTTTACTTTGTTTTTAGATATACATAAAATCTTGTAAATTACTAATTATTAATTAA
1 AACCAAAATTTTTACTTTGTTTTTAGATATACATAAAATCTTGTAAATTAATAATTATTAACTAA
* *
27224 TAATTTAGTATCTTTATTGTTATTCGTTATAAAATTTAAAAATTATTAATTTGTAATTTAACATA
66 CAATTTAGTATCTTTATTGTTATTCGTTATAAAATTTAAAAACTATTAATTTGTAATTTAACATA
*
27289 TTTCTTATTCTATATTAGTAAACTAATACTTATTAATTAGACTTTTAATTAAATAATTTTGTAAG
131 TTTCTTATTCTATATTAGTAAACTAATACTTATTAATTAGACTTTTAATGAAATAATTTTGTAAG
*
27354 GTAACTATTAAAAAATTATAAAAAAATTAATGAATTATTCACGAACTTATAAAATAAAGTTGTAT
196 GTAACTATTAAAAAATTATAAAAAAATTAATGAATTATTCACGAACTTATAAAATAAAATTGTAT
* * *
27419 TTTGTTCGATTCAACTCATTAAAGTCTCGAGTAAAATATAACTTTAAGTCAACCATAATCA
261 TTTATTCGACTCAACTCATTAAAGTCTCGAGTAAAATATAACTTTAAGTCAACCAGAATCA
* *
27480 AACCAAATTTTTTACTTTGTTTTTA-ACTATACATAAAATCTTGTAAATTAATAATTATTAACTC
1 AACCAAAATTTTTACTTTGTTTTTAGA-TATACATAAAATCTTGTAAATTAATAATTATTAACTA
27544 ACAATTTAGTATCTTTATTGTTATTCGTTATAAAATTTAAAAACTATTAATTTGTAATTTAACAT
65 ACAATTTAGTATCTTTATTGTTATTCGTTATAAAATTTAAAAACTATTAATTTGTAATTTAACAT
27609 -TCTTCTTATTCTATATTAGTAAACTAATACTTATTAATTAGACTTTTTAATGAAATAATTTTGT
130 AT-TTCTTATTCTATATTAGTAAACTAATACTTATTAATTAGAC-TTTTAATGAAATAATTTTGT
*
27673 AAGGTAACTATTAAAAAATTATAAAAAAATTAATGAATTATTCATGAACTTATAAAATAAAATTG
193 AAGGTAACTATTAAAAAATTATAAAAAAATTAATGAATTATTCACGAACTTATAAAATAAAATTG
*
27738 TATTTTATTCGACTCAACTCATTAAAGTCTCGAGTAAATTATAAC-TTAAGTCAACCAGAATCA
258 TATTTTATTCGACTCAACTCATTAAAGTCTCGAGTAAAATATAACTTTAAGTCAACCAGAATCA
27801 AA
1 AA
27803 TATTGATCAA
Statistics
Matches: 307, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
320 2 0.01
321 181 0.59
322 124 0.40
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.42
Consensus pattern (321 bp):
AACCAAAATTTTTACTTTGTTTTTAGATATACATAAAATCTTGTAAATTAATAATTATTAACTAA
CAATTTAGTATCTTTATTGTTATTCGTTATAAAATTTAAAAACTATTAATTTGTAATTTAACATA
TTTCTTATTCTATATTAGTAAACTAATACTTATTAATTAGACTTTTAATGAAATAATTTTGTAAG
GTAACTATTAAAAAATTATAAAAAAATTAATGAATTATTCACGAACTTATAAAATAAAATTGTAT
TTTATTCGACTCAACTCATTAAAGTCTCGAGTAAAATATAACTTTAAGTCAACCAGAATCA
Found at i:36329 original size:17 final size:17
Alignment explanation
Indices: 36307--36340 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
36297 TTGTTAAGAA
36307 CTCGAGT-CGAGCTCGAG
1 CTCGAGTCCGAG-TCGAG
36324 CTCGAGTCCGAGTCGAG
1 CTCGAGTCCGAGTCGAG
36341 TCCATTCGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.18, C:0.29, G:0.35, T:0.18
Consensus pattern (17 bp):
CTCGAGTCCGAGTCGAG
Found at i:36957 original size:20 final size:20
Alignment explanation
Indices: 36920--36957 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36910 TTTATTAACA
*
36920 AAAATATTAAAGTTATTTTT
1 AAAATATTAAAGTAATTTTT
36940 AAAATATTAGAA-TAATTT
1 AAAATATTA-AAGTAATTT
36958 ATTTAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
AAAATATTAAAGTAATTTTT
Found at i:39928 original size:20 final size:20
Alignment explanation
Indices: 39905--40006 Score: 82
Period size: 20 Copynumber: 5.2 Consensus size: 20
39895 ATTATTTTTC
39905 TAAACCTACCAAATTTTTAT
1 TAAACCTACCAAATTTTTAT
* * ***
39925 TAAAAC-ACTAAAAGATTAT
1 TAAACCTACCAAATTTTTAT
*
39944 TAAACCTACCAATTTTTTAT
1 TAAACCTACCAAATTTTTAT
* *** *
39964 TAAAAC-ACCAAAAGATTAC
1 TAAACCTACCAAATTTTTAT
*
39983 TAAACCTACCAATTTTTTAT
1 TAAACCTACCAAATTTTTAT
40003 TAAA
1 TAAA
40007 ACACCAAAAG
Statistics
Matches: 57, Mismatches: 23, Indels: 4
0.68 0.27 0.05
Matches are distributed among these distances:
19 27 0.47
20 30 0.53
ACGTcount: A:0.46, C:0.18, G:0.02, T:0.34
Consensus pattern (20 bp):
TAAACCTACCAAATTTTTAT
Found at i:39961 original size:39 final size:39
Alignment explanation
Indices: 39904--40020 Score: 207
Period size: 39 Copynumber: 3.0 Consensus size: 39
39894 AATTATTTTT
* *
39904 CTAAACCTACCAAATTTTTATTAAAACACTAAAAGATTA
1 CTAAACCTACCAATTTTTTATTAAAACACCAAAAGATTA
*
39943 TTAAACCTACCAATTTTTTATTAAAACACCAAAAGATTA
1 CTAAACCTACCAATTTTTTATTAAAACACCAAAAGATTA
39982 CTAAACCTACCAATTTTTTATTAAAACACCAAAAGATTA
1 CTAAACCTACCAATTTTTTATTAAAACACCAAAAGATTA
40021 ATGTAATGGT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.32
Consensus pattern (39 bp):
CTAAACCTACCAATTTTTTATTAAAACACCAAAAGATTA
Found at i:39986 original size:19 final size:19
Alignment explanation
Indices: 39964--40020 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
39954 AATTTTTTAT
39964 TAAAACACCAAAAGATTAC
1 TAAAACACCAAAAGATTAC
* **** *
39983 TAAACCTACCAATTTTTTAT
1 TAAAAC-ACCAAAAGATTAC
40003 TAAAACACCAAAAGATTA
1 TAAAACACCAAAAGATTA
40021 ATGTAATGGT
Statistics
Matches: 26, Mismatches: 11, Indels: 2
0.67 0.28 0.05
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.51, C:0.19, G:0.04, T:0.26
Consensus pattern (19 bp):
TAAAACACCAAAAGATTAC
Found at i:40205 original size:16 final size:19
Alignment explanation
Indices: 40166--40202 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
40156 ACATTAATTG
40166 ATAAATAAACTAGAATTACA
1 ATAAATAAAC-AGAATTACA
40186 ATAAATAAA-AG-ATTACA
1 ATAAATAAACAGAATTACA
40203 TAATTACTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.35
18 2 0.12
20 9 0.53
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.24
Consensus pattern (19 bp):
ATAAATAAACAGAATTACA
Found at i:43317 original size:35 final size:35
Alignment explanation
Indices: 43271--43341 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
43261 TTTTTCTAAG
43271 TGAGTGGAATGGGTTGGAAAGTATGGACATCTCAT
1 TGAGTGGAATGGGTTGGAAAGTATGGACATCTCAT
*
43306 TGAGTGGAATGGGTTGGAAGGTATGGACATCTCAT
1 TGAGTGGAATGGGTTGGAAAGTATGGACATCTCAT
43341 T
1 T
43342 CGATGCTGTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.27, C:0.08, G:0.35, T:0.30
Consensus pattern (35 bp):
TGAGTGGAATGGGTTGGAAAGTATGGACATCTCAT
Found at i:43738 original size:24 final size:22
Alignment explanation
Indices: 43707--43757 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 22
43697 TTAACTTTTT
43707 TAAAATAAAAATATTTTAAATTA
1 TAAAATAAAAATA-TTTAAATTA
*
43730 TAAATATAAAATTATTTAAATTA
1 TAAA-ATAAAAATATTTAAATTA
43753 TAAAA
1 TAAAA
43758 AAATGTATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 1 0.04
23 17 0.65
24 8 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (22 bp):
TAAAATAAAAATATTTAAATTA
Found at i:43792 original size:22 final size:22
Alignment explanation
Indices: 43767--43824 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
43757 AAAATGTATG
43767 TAAAAATACTAAAAATA-AAAT
1 TAAAAATACTAAAAATATAAAT
* * *
43788 TTAAATTACTAAAAAATATACAT
1 TAAAAATACT-AAAAATATAAAT
43811 TAAAAATACTAAAA
1 TAAAAATACTAAAA
43825 TTATCATATA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 8 0.27
22 11 0.37
23 11 0.37
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.28
Consensus pattern (22 bp):
TAAAAATACTAAAAATATAAAT
Found at i:43820 original size:23 final size:22
Alignment explanation
Indices: 43767--43824 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
43757 AAAATGTATG
43767 TAAAAATACT-AAAAATAAAAT
1 TAAAAATACTAAAAAATAAAAT
* * *
43788 TTAAATTACTAAAAAATATACAT
1 TAAAAATACTAAAAAATA-AAAT
43811 TAAAAATACTAAAA
1 TAAAAATACTAAAA
43825 TTATCATATA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 8 0.27
22 7 0.23
23 15 0.50
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.28
Consensus pattern (22 bp):
TAAAAATACTAAAAAATAAAAT
Found at i:46232 original size:78 final size:78
Alignment explanation
Indices: 46103--46246 Score: 225
Period size: 78 Copynumber: 1.8 Consensus size: 78
46093 TGAGGTAAAA
* * ** * *
46103 CATTTGGGAGATTGGGTTTGCATTTGGCTGGCATCTAGTTTTCTCTCTTTAATATGAACTGATTA
1 CATTTGGGAGATTGGGTTTGCATTAGGCTCGCATCTAACTTTATCTCTTTAATAAGAACTGATTA
46168 TCGGTCTTATCAG
66 TCGGTCTTATCAG
*
46181 CATTTGGGAGATTGGGTTTGCATTAGGTTCGCATCTAACTTTATCTCTTTAATAAGAACTGATTA
1 CATTTGGGAGATTGGGTTTGCATTAGGCTCGCATCTAACTTTATCTCTTTAATAAGAACTGATTA
46246 T
66 T
46247 TGATCTCATC
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 59 1.00
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.42
Consensus pattern (78 bp):
CATTTGGGAGATTGGGTTTGCATTAGGCTCGCATCTAACTTTATCTCTTTAATAAGAACTGATTA
TCGGTCTTATCAG
Found at i:46432 original size:19 final size:20
Alignment explanation
Indices: 46377--46443 Score: 82
Period size: 20 Copynumber: 3.3 Consensus size: 20
46367 TTATGTTGAG
46377 AGGGGTGAACTTCTAAAACTT
1 AGGGG-GAACTTCTAAAACTT
*
46398 AGGGGGAGCTTCTAAAACTT
1 AGGGGGAACTTCTAAAACTT
* *
46418 A-GGGGAACTTATAAAATTTT
1 AGGGGGAACTTCTAAAA-CTT
46438 AGGGGG
1 AGGGGG
46444 CGAACAGATT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
19 13 0.32
20 18 0.45
21 9 0.22
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (20 bp):
AGGGGGAACTTCTAAAACTT
Found at i:48466 original size:37 final size:37
Alignment explanation
Indices: 48416--48492 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
48406 CCTTGCAGTG
48416 TACCAAATCCATTGCATCATTCGTCTTTATTGATATT
1 TACCAAATCCATTGCATCATTCGTCTTTATTGATATT
* *
48453 TACCAAATCCATTGCATCTTTCGTCTTTGTTGATATT
1 TACCAAATCCATTGCATCATTCGTCTTTATTGATATT
48490 TAC
1 TAC
48493 TTTACTCACA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.22, G:0.09, T:0.44
Consensus pattern (37 bp):
TACCAAATCCATTGCATCATTCGTCTTTATTGATATT
Done.