Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001117.1 Hibiscus syriacus cultivar Beakdansim tig00002211_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73729

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10--129
24
4.9
25
88
7
192
36
18
15
29
1.92
9--129
49
2.5
49
89
6
192
36
18
15
29
1.92
1738--1771
16
2.1
16
94
0
59
14
0
5
79
0.91
4936--4987
18
2.8
18
85
5
68
51
1
1
44
1.23
6316--6359
21
2.0
22
82
4
54
40
0
20
38
1.53
7389--7438
18
2.8
18
96
0
91
28
34
22
16
1.95
8813--8867
10
5.3
10
74
8
56
32
12
9
45
1.74
8811--8867
21
2.7
21
100
0
114
31
12
8
47
1.72
8823--8861
11
3.6
11
79
6
53
25
15
10
48
1.76
10179--10249
16
4.5
16
72
10
65
40
16
1
40
1.58
10187--10260
21
3.3
21
72
17
76
41
18
1
37
1.59
10487--10550
22
2.9
22
83
0
92
28
29
21
20
1.98
13209--13234
2
13.0
2
100
0
52
50
0
0
50
1.00
14474--14503
2
15.0
2
100
0
60
50
0
0
50
1.00
15328--15396
16
4.5
16
68
17
56
40
17
1
40
1.58
15336--15407
21
3.3
21
74
11
81
41
19
1
37
1.60
15318--15411
45
2.1
44
96
2
170
39
18
2
40
1.62
15634--15715
22
3.9
22
75
7
82
28
26
20
24
1.99
15848--15925
41
1.9
41
86
0
111
34
17
5
42
1.72
19173--19212
21
1.9
21
85
10
55
35
2
10
52
1.48
19939--19963
6
4.2
6
100
0
50
0
0
64
36
0.94
21763--22054
160
1.8
162
85
5
414
30
11
15
42
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23923--23987
32
2.0
32
87
0
94
21
10
21
46
1.82
25554--25587
17
2.0
17
88
0
50
52
5
0
41
1.25
25582--25609
2
14.0
2
100
0
56
50
0
0
50
1.00
33154--33193
16
2.4
17
83
4
55
22
2
25
50
1.62
35045--35075
7
4.4
7
100
0
62
25
29
29
16
1.96
35065--35107
22
2.0
22
100
0
86
9
23
48
18
1.76
35110--35184
29
2.5
31
89
8
120
28
26
26
18
1.98
35110--35184
9
7.8
9
77
11
69
28
26
26
18
1.98
42320--42350
7
4.4
7
100
0
62
25
29
29
16
1.96
42347--42404
5
10.8
5
78
14
62
6
22
51
18
1.70
42340--42404
22
3.0
22
100
0
130
9
23
49
18
1.76
42403--42500
19
5.1
19
80
13
101
28
27
26
17
1.98
42401--42499
9
10.3
9
80
10
90
28
27
28
16
1.97
42402--42499
29
3.4
28
85
5
124
28
27
27
16
1.97
43448--43513
24
2.8
24
86
2
98
21
25
25
27
1.99
44209--44254
12
4.0
12
77
11
60
19
10
21
47
1.80
44211--44254
22
2.0
22
90
0
70
20
11
18
50
1.77
44491--44530
19
2.1
19
95
0
71
15
17
30
37
1.90
45377--45401
13
1.9
13
100
0
50
16
24
8
52
1.70
52161--52194
17
2.0
17
88
11
52
55
0
2
41
1.15
53997--54042
21
2.2
21
85
14
60
54
4
6
34
1.46
59033--59062
13
2.4
13
94
5
53
73
0
0
26
0.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61282--61340
26
2.3
27
85
8
86
64
0
28
6
1.19
70658--70726
28
2.5
27
88
6
95
23
42
17
17
1.89
70677--70734
28
2.1
28
93
3
100
25
39
18
15
1.91
71052--71088
19
1.9
19
88
0
56
70
0
27
2
1.01
71192--71232
22
1.9
21
85
5
55
26
0
19
53
1.45

Tables:   1

The End!