genome.fa.s1118.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001118.1 Hibiscus syriacus cultivar Beakdansim tig00002214_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151052

Tables:   1   

This is table  1  of  1  ( 117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3383--3421	20	2.0	19	85	5	51	41	23	0	35	1.55
4594--4654	31	2.0	31	83	6	79	27	16	13	42	1.85
10840--10865	2	13.0	2	100	0	52	50	0	0	50	1.00
24931--24982	21	2.5	21	81	3	61	38	19	25	17	1.93
24971--25002	16	2.0	16	100	0	64	31	25	18	25	1.98
24983--25020	20	1.9	20	100	0	76	31	23	15	28	1.96
25580--25627	19	2.5	20	79	3	62	47	25	16	10	1.78
25623--25693	19	3.7	19	90	3	115	11	19	22	46	1.81
25628--25704	39	2.0	39	87	5	111	9	19	25	45	1.80
25745--25802	20	2.9	20	80	10	64	13	24	18	43	1.87
27864--27930	21	3.2	21	66	6	55	23	35	20	19	1.95
27812--27930	42	2.8	42	81	5	107	22	36	18	22	1.95
29279--29314	14	2.6	14	95	0	63	30	0	25	44	1.54
29441--29499	19	3.4	19	73	22	74	15	20	18	45	1.85
29422--29498	33	2.3	33	84	10	104	19	20	20	38	1.93
31787--31811	12	2.1	12	100	0	50	0	28	0	72	0.86
31986--32039	24	2.2	24	86	0	72	38	20	14	25	1.91
33091--33128	20	1.9	20	94	0	67	39	23	21	15	1.92
33152--33205	14	3.5	14	77	22	63	11	20	20	48	1.80
33134--33204	33	2.2	33	84	0	88	19	19	21	39	1.93
33293--33329	14	2.6	14	86	0	56	48	21	0	29	1.50
35199--35304	19	5.8	19	77	12	96	42	21	21	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35330--35414	19	4.4	19	83	5	82	14	22	23	40	1.90
35330--35414	20	4.4	19	83	5	91	14	22	23	40	1.90
35895--35939	18	2.5	18	85	0	63	15	15	42	26	1.87
37258--37316	20	3.0	20	87	0	73	42	22	18	16	1.89
37579--37622	22	2.0	22	90	0	70	20	15	43	20	1.88
37810--37923	20	5.7	20	84	6	131	24	18	27	29	1.98
37790--37925	41	3.3	41	81	6	168	24	17	25	32	1.97
37913--38005	20	4.5	21	78	4	100	17	24	18	39	1.91
37852--37986	41	3.3	41	83	4	148	19	21	22	37	1.95
37913--38005	41	2.3	41	100	0	186	17	24	18	39	1.91
41317--41369	25	2.1	25	100	0	106	18	13	11	56	1.66
42408--42448	21	2.0	21	90	9	66	29	9	14	46	1.77
42723--42784	18	3.6	17	87	8	81	38	6	25	29	1.81
43309--43398	38	2.4	37	89	10	139	38	38	11	11	1.76
43569--43652	32	2.5	33	92	3	134	40	38	11	9	1.75
43835--43905	37	1.9	37	97	0	133	42	36	8	12	1.73
43829--43910	37	2.4	34	82	10	96	40	37	10	10	1.76
43269--44091	258	3.2	256	91	4	1317	36	28	11	23	1.90
44440--44476	20	1.9	19	89	10	58	45	10	24	18	1.81
45924--45990	21	3.2	21	95	0	116	17	25	17	38	1.92
45987--46100	20	5.7	20	81	2	138	40	21	18	20	1.92
46087--46133	20	2.3	20	88	0	67	34	27	17	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45987--46113	40	3.2	39	81	7	139	39	22	18	20	1.93
46970--47016	24	2.0	24	95	0	85	27	21	17	34	1.95
49471--49549	40	2.0	41	89	2	124	37	20	20	21	1.94
49461--49549	20	4.4	20	81	5	99	37	21	20	21	1.95
49554--49622	19	3.8	19	73	21	76	44	18	21	14	1.85
49521--49616	33	2.9	34	90	3	149	42	18	22	15	1.88
49633--49719	33	2.6	33	87	3	111	13	22	19	43	1.86
49825--49861	14	2.6	14	86	0	56	48	21	0	29	1.50
51830--51896	20	3.3	20	95	0	125	40	23	19	16	1.91
51830--51917	20	4.4	20	88	0	104	39	23	17	19	1.92
51830--51918	40	2.2	40	87	0	124	39	23	17	19	1.92
51941--52096	34	4.4	34	74	13	154	17	19	19	42	1.89
51963--52099	20	7.5	20	74	21	113	18	18	20	41	1.90
53973--54012	20	2.0	20	95	0	71	57	20	12	10	1.63
54411--54476	22	3.0	22	84	0	87	22	15	36	25	1.93
54656--54767	20	5.6	20	77	4	109	25	22	17	34	1.96
54764--54809	21	2.2	21	88	0	65	36	17	26	19	1.94
58369--58479	19	5.7	19	84	5	96	41	23	11	23	1.87
58385--58478	40	2.4	38	80	3	116	42	22	11	23	1.86
58612--58649	16	2.5	15	84	12	51	31	2	0	65	1.06
59760--59868	28	3.8	29	87	4	168	19	21	14	44	1.86
59760--59868	57	1.9	58	88	5	168	19	21	14	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59867--59891	12	2.1	12	100	0	50	40	24	0	36	1.55
60245--60401	64	2.5	63	79	10	176	25	19	19	35	1.95
61575--61628	24	2.2	24	83	0	63	22	16	22	38	1.93
64669--64705	18	2.1	18	89	0	56	32	5	10	51	1.60
64661--64713	24	2.2	24	86	0	70	35	3	13	47	1.61
65015--65101	39	2.2	39	95	0	156	45	21	14	17	1.84
65277--65319	20	2.2	20	95	0	77	41	23	18	16	1.89
65471--65507	14	2.6	14	86	0	56	45	21	0	32	1.52
66930--67027	21	4.7	21	76	11	85	21	19	34	24	1.96
67171--67212	12	3.5	12	83	0	57	66	2	2	28	1.16
67436--67485	21	2.4	21	86	0	73	34	34	14	18	1.90
69226--69257	14	2.3	14	94	0	55	12	18	21	46	1.82
69742--69788	20	2.3	20	100	0	94	23	19	23	34	1.97
69782--69883	20	5.2	20	81	2	134	17	13	25	43	1.86
69710--69883	79	2.2	79	81	11	189	18	16	23	41	1.90
69778--69883	39	2.7	39	97	2	194	16	15	25	42	1.87
69921--69968	20	2.4	20	96	0	87	22	14	33	29	1.94
84441--84485	3	15.0	3	90	9	74	66	0	0	33	0.92
84441--84485	20	2.3	19	92	3	72	66	0	0	33	0.92
84698--85561	113	7.7	112	85	3	1037	28	18	14	38	1.90
84698--85596	226	4.0	225	86	3	1157	28	18	14	37	1.90
84700--85569	339	2.6	336	88	4	1275	28	18	14	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87500--87537	16	2.4	16	82	8	51	57	7	5	28	1.49
87858--87927	15	4.7	14	80	16	79	0	17	0	82	0.66
87857--87932	22	3.4	23	87	7	104	0	18	0	81	0.69
99042--99101	3	20.0	3	77	13	61	41	0	0	58	0.98
99044--99101	15	3.9	15	86	11	75	43	0	0	56	0.99
99042--99101	12	5.3	11	79	13	68	41	0	0	58	0.98
111815--111866	1	52.0	1	76	0	50	88	0	11	0	0.52
111817--111867	6	9.0	6	80	20	65	86	0	13	0	0.58
111815--111864	9	5.8	9	83	6	68	88	0	12	0	0.53
111815--111866	16	3.2	16	87	12	79	88	0	11	0	0.52
112178--112222	16	2.8	16	83	10	56	28	8	6	55	1.56
113003--113231	83	2.8	83	95	1	406	25	13	24	35	1.92
113186--113395	114	1.8	114	96	0	393	31	12	21	33	1.91
113103--113487	206	1.9	197	91	4	626	30	13	22	34	1.92
113299--113579	92	3.1	92	98	0	544	28	13	22	35	1.92
113018--113672	298	2.3	289	92	5	1067	29	13	22	34	1.93
114373--114930	113	4.9	113	93	1	884	37	13	19	29	1.90
114373--114930	227	2.5	226	92	1	884	37	13	19	29	1.90
115161--115215	3	18.3	3	92	0	92	36	1	0	61	1.06
116653--116699	14	3.5	13	80	13	51	40	2	2	55	1.24
129836--129973	60	2.3	60	82	1	150	34	13	14	37	1.86
131384--131577	97	2.0	97	100	0	388	24	12	29	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132575--132649	36	2.1	36	95	2	134	21	17	12	49	1.78
135150--135182	17	1.9	17	93	0	57	54	0	0	45	0.99
144401--144448	24	2.0	24	92	8	80	52	2	4	41	1.32
144421--144479	31	1.9	31	82	6	75	42	0	1	55	1.09
147571--147644	34	2.2	34	90	4	114	21	25	20	32	1.97
148145--148281	59	2.3	58	78	5	150	29	18	17	35	1.94
148478--148621	59	2.4	60	78	9	143	36	15	15	31	1.90

Tables:   1

The End!