Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001119.1 Hibiscus syriacus cultivar Beakdansim tig00002215_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78659

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
180--240
23
2.6
24
76
10
63
55
3
9
31
1.48
3345--3416
2
37.5
2
89
8
114
50
0
1
48
1.09
3522--3595
21
3.5
21
71
20
64
31
0
20
48
1.50
4776--4832
30
1.9
29
85
3
78
40
15
5
38
1.70
7938--7990
15
3.5
15
81
0
70
41
5
13
39
1.68
7942--8005
30
2.2
29
88
2
92
45
6
14
34
1.70
7940--8005
15
4.5
15
75
7
64
43
6
15
34
1.71
8313--8346
11
2.9
12
82
8
52
47
0
0
52
1.00
8298--8336
20
2.0
20
84
0
51
48
0
2
48
1.15
12511--12562
25
2.1
25
88
0
77
32
7
19
40
1.80
22266--22302
14
2.6
14
82
0
56
32
0
2
64
1.07
29895--29950
29
2.0
28
85
3
76
19
37
23
19
1.94
30007--30047
14
2.9
14
100
0
82
21
36
34
7
1.82
30000--30051
14
3.7
14
92
0
77
23
38
30
7
1.83
30007--30060
28
1.9
28
88
0
81
22
35
33
9
1.86
30107--30212
29
3.7
29
98
0
203
23
27
34
14
1.93
35290--35341
23
2.2
23
80
10
61
36
1
1
59
1.19
35521--35621
53
1.9
53
85
4
141
47
10
16
24
1.79
36770--36812
22
1.9
23
90
4
70
44
2
0
53
1.13
37452--37585
60
2.2
60
83
7
173
35
6
23
33
1.81
40852--40885
14
2.4
14
95
0
59
23
35
35
5
1.79
40859--40889
14
2.2
14
94
0
53
22
38
29
9
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46666--46709
22
2.0
22
86
8
63
50
4
4
40
1.43
50822--50860
6
6.5
6
93
0
51
20
15
41
23
1.90
52208--52272
21
3.1
21
93
0
112
26
12
30
30
1.92
57984--58043
31
1.9
31
89
0
93
35
15
11
38
1.83
57979--58055
31
2.5
31
82
0
82
32
12
15
38
1.86
59267--59299
2
16.5
2
100
0
66
51
0
0
48
1.00
59465--59511
25
2.0
24
87
8
69
44
8
12
34
1.73
61580--61710
60
2.2
60
82
8
151
36
16
11
35
1.84
63961--63992
2
16.0
2
100
0
64
50
0
0
50
1.00
67118--67315
84
2.4
84
86
0
263
34
15
14
34
1.88
67121--67644
83
6.3
82
75
10
372
32
16
16
34
1.91
67254--67644
167
2.4
165
80
6
443
31
16
17
34
1.93
70061--70105
22
2.0
22
95
0
81
46
8
15
28
1.76
73877--73944
28
2.4
28
100
0
136
19
10
26
44
1.82
77318--77348
15
2.1
15
100
0
62
19
41
19
19
1.90

Tables:   1

The End!