Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000112.1 Hibiscus syriacus cultivar Beakdansim tig00000201_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83815

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12400--12444
21
2.2
21
88
4
65
28
17
11
42
1.84
29361--29460
30
3.4
30
80
15
127
44
8
7
41
1.61
29489--29526
16
2.4
16
91
8
60
55
13
5
26
1.59
30171--30231
24
2.5
24
91
0
104
32
24
18
24
1.97
37494--37558
25
2.6
25
95
2
114
30
23
21
24
1.99
41241--41295
2
27.5
2
100
0
110
50
0
0
49
1.00
42235--42376
65
2.2
65
87
1
196
35
18
19
26
1.95
43057--43128
22
3.3
22
88
3
110
27
23
20
27
1.99
44852--44896
20
2.2
20
84
8
54
35
15
22
26
1.94
45452--46322
81
10.8
81
88
0
1181
35
12
22
30
1.90
45452--46297
242
3.5
241
89
2
1135
34
12
21
30
1.90
50679--51875
81
14.8
81
88
0
1642
35
10
22
30
1.89
53271--53445
90
2.0
89
90
3
280
36
12
6
44
1.68
54844--54910
32
2.1
32
85
0
89
22
25
29
22
1.99
55192--55230
20
2.0
20
89
0
60
33
23
10
33
1.88
57317--57404
31
2.9
30
83
5
97
36
4
14
44
1.66
58982--59028
24
1.9
25
82
4
60
40
2
2
55
1.24
63589--63625
17
2.2
17
86
13
51
56
0
8
35
1.29
68117--68175
12
4.8
12
79
8
57
0
1
15
83
0.74
68117--68175
19
3.2
19
80
2
66
0
1
15
83
0.74
70285--70315
15
2.1
15
93
0
53
41
6
25
25
1.79
75212--75253
13
3.5
13
75
18
54
66
9
2
21
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75209--75255
23
2.0
23
100
0
94
65
8
4
21
1.37

Tables:   1

The End!