Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001120.1 Hibiscus syriacus cultivar Beakdansim tig00002217_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94436

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
193--227
2
17.5
2
100
0
70
0
51
0
48
1.00
902--950
23
2.1
23
81
7
55
57
4
10
28
1.50
2718--2752
2
17.5
2
93
0
61
48
2
0
48
1.16
3289--3534
42
5.8
43
81
7
234
36
19
21
23
1.95
5687--5727
3
13.7
3
85
10
57
36
0
26
36
1.57
5687--5728
15
2.8
15
92
0
75
35
0
26
38
1.57
6099--6152
28
1.9
28
92
7
92
53
11
12
22
1.70
6181--6226
2
23.0
2
100
0
92
50
0
0
50
1.00
10993--11019
6
4.5
6
100
0
54
48
0
0
51
1.00
18899--18992
46
2.0
46
97
0
179
48
6
6
38
1.54
30980--31165
93
2.0
93
92
2
311
18
21
30
30
1.97
31868--31928
31
1.9
32
86
3
88
45
9
16
27
1.79
33506--33606
47
2.1
49
89
7
154
48
5
13
31
1.67
33809--33850
14
3.2
13
80
13
50
54
23
0
21
1.44
35802--35842
21
2.0
21
90
0
64
56
2
2
39
1.26
37692--37773
29
2.8
29
96
0
146
13
34
28
24
1.93
37923--38036
29
3.9
29
89
0
174
21
28
35
14
1.93
38065--38089
12
2.1
12
100
0
50
16
36
8
40
1.77
44611--44636
2
13.0
2
100
0
52
50
0
0
50
1.00
45443--45515
34
2.1
34
89
0
110
27
32
6
32
1.83
47931--47987
20
2.8
20
97
0
105
35
10
12
42
1.77
48453--48488
16
2.2
16
95
0
63
8
19
25
47
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53502--53544
13
3.2
13
93
3
68
23
27
30
18
1.98
53534--53591
17
3.4
17
87
0
89
18
24
39
17
1.92
53502--53544
7
6.4
7
84
10
63
23
27
30
18
1.98
53514--53591
34
2.2
36
88
6
115
20
24
37
17
1.94
53585--53731
19
7.7
19
92
3
233
27
29
25
17
1.97
60210--60248
19
2.0
20
95
5
71
23
30
30
15
1.95
60206--60265
26
2.4
24
88
5
84
20
28
35
16
1.94
60238--60278
17
2.4
17
100
0
82
14
24
43
17
1.86
60206--60248
7
6.4
7
94
5
72
23
30
30
16
1.96
60272--60361
19
4.7
19
89
6
128
26
30
25
17
1.98
60274--60361
9
9.1
10
77
12
94
27
30
23
18
1.97
61881--62005
60
2.1
60
83
3
153
28
24
11
35
1.90
61905--62033
60
2.2
60
86
8
174
30
23
10
36
1.88
66861--67006
30
4.8
30
87
1
211
23
26
16
32
1.96
66861--67006
61
2.4
60
89
1
220
23
26
16
32
1.96
73902--73946
23
2.0
23
95
0
81
62
17
11
8
1.53
73901--73994
23
4.2
23
74
8
68
57
17
9
15
1.64
74198--74294
34
2.9
34
92
0
149
55
18
12
13
1.68
74251--74305
24
2.3
24
87
6
76
56
18
12
12
1.67
76364--76393
13
2.2
14
94
5
53
66
0
0
33
0.92
82153--82185
12
2.6
13
85
9
50
63
0
0
36
0.95
82150--82195
16
2.8
16
87
12
58
65
2
0
32
1.05

Tables:   1

The End!