Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001121.1 Hibiscus syriacus cultivar Beakdansim tig00002218_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83124

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11509--11675
83
2.0
83
98
0
325
28
23
28
19
1.98
11814--11862
22
2.2
22
82
7
55
57
4
0
38
1.18
11829--11871
22
2.0
22
95
0
77
51
11
0
37
1.39
11831--11879
22
2.2
22
85
3
62
55
12
0
32
1.37
11819--12231
54
7.5
54
75
14
380
53
12
0
34
1.38
11851--12376
32
18.7
32
71
24
381
52
12
0
34
1.41
11953--12006
14
3.6
14
72
18
54
57
5
0
37
1.22
11995--12037
22
2.0
22
100
0
86
51
13
0
34
1.42
11997--12045
22
2.2
22
88
3
71
55
14
0
30
1.40
12049--12091
22
2.0
22
95
0
77
51
11
0
37
1.39
12051--12099
22
2.2
22
85
3
62
55
12
0
32
1.37
12173--12258
14
5.6
14
67
20
55
56
8
1
33
1.36
11819--12231
220
1.9
220
95
1
756
53
12
0
34
1.38
11931--12446
252
2.0
252
97
0
969
53
12
0
34
1.41
12247--12289
22
2.0
22
100
0
86
51
13
0
34
1.42
12134--12375
54
4.3
53
86
12
340
52
11
0
34
1.42
12249--12297
22
2.2
22
88
3
71
55
14
0
30
1.40
12386--12481
22
4.2
22
68
7
75
52
9
0
38
1.34
12292--12513
47
4.4
50
75
14
142
51
9
0
38
1.35
12426--12543
15
7.5
15
81
13
139
51
2
0
45
1.14
18260--18403
3
46.7
3
68
22
54
55
4
1
38
1.28
18235--18561
17
19.4
16
68
19
93
52
5
1
40
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18235--18561
5
61.2
5
67
23
120
52
5
1
40
1.35
18235--18564
12
27.6
12
68
21
162
52
5
1
40
1.35
18260--18564
39
7.9
38
71
20
176
52
5
1
40
1.36
18260--18563
64
4.7
62
73
19
205
52
5
1
40
1.36
19090--19128
21
1.9
20
84
5
51
61
2
0
35
1.10
28591--28668
42
1.9
41
92
5
131
12
10
35
41
1.77
30172--30213
19
2.2
19
95
0
75
54
16
19
9
1.69
30179--30217
19
2.1
19
95
0
69
51
17
23
7
1.71
34043--34149
56
1.9
56
94
0
187
43
6
9
40
1.63
37200--37275
3
24.7
3
70
19
50
6
25
1
67
1.23
38673--38718
21
2.1
22
84
4
58
69
4
10
15
1.32
39118--39163
18
2.6
18
93
3
76
32
8
30
28
1.87
39681--39743
33
1.9
33
96
0
117
44
33
7
14
1.74
39531--40069
254
2.1
255
82
9
643
41
18
11
28
1.85
40121--40179
27
2.2
27
84
0
73
30
22
16
30
1.96
40134--40193
27
2.2
27
93
0
102
26
15
18
40
1.90
41432--41484
23
2.3
23
86
0
70
49
15
22
13
1.79
46143--46190
17
2.8
17
90
0
78
43
14
2
39
1.57
52992--53190
56
3.5
55
78
10
204
35
3
2
58
1.29
52957--53202
29
8.6
28
78
10
187
35
4
2
57
1.32
53188--53235
10
5.2
9
80
19
55
41
2
0
56
1.11
52996--53203
116
1.8
116
80
9
257
36
3
2
57
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53198--53229
16
1.9
17
93
6
57
40
0
0
59
0.97
54097--54125
2
14.5
2
100
0
58
51
0
0
48
1.00
54219--54247
12
2.4
12
100
0
58
13
17
10
58
1.62
58630--58672
21
2.0
21
95
0
77
27
25
18
27
1.98
64124--64202
24
3.5
24
80
19
116
25
3
22
48
1.68
64136--64175
18
2.2
18
100
0
80
22
5
22
50
1.68
71691--71717
7
3.9
7
100
0
54
44
0
14
40
1.46
82391--82475
32
2.7
32
85
1
109
40
25
0
34
1.56

Tables:   1

The End!