Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001122.1 Hibiscus syriacus cultivar Beakdansim tig00002219_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113797

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
542--662
45
2.6
45
88
6
172
27
5
45
21
1.74
2177--2232
20
2.8
20
83
2
78
48
21
19
10
1.79
2229--2279
20
2.5
20
87
9
77
9
17
25
47
1.78
2599--2656
22
2.7
22
78
7
57
24
17
39
18
1.92
2804--2874
20
3.5
20
94
0
115
18
11
25
45
1.82
20104--20150
24
2.0
24
91
0
76
25
12
6
55
1.61
20361--20441
41
2.0
41
87
0
117
35
19
16
28
1.93
20572--20611
17
2.3
17
91
4
62
30
27
22
20
1.98
25888--26081
37
5.4
35
74
18
111
45
4
6
43
1.48
25853--25970
39
3.2
35
78
17
98
44
4
7
43
1.52
26014--26081
33
2.1
31
84
10
84
44
4
5
45
1.48
26014--26081
32
2.1
32
84
10
86
44
4
5
45
1.48
25881--26080
107
1.9
105
84
11
264
46
4
6
42
1.50
26149--26194
13
3.6
13
85
2
58
34
2
2
60
1.21
27642--27680
3
13.0
3
89
10
62
30
0
2
66
1.05
27783--27817
14
2.5
14
86
13
54
17
2
5
74
1.14
31717--31804
27
3.3
27
75
9
90
60
1
11
27
1.38
31717--31815
27
3.7
27
73
8
76
61
1
10
27
1.34
31913--32001
37
2.4
37
73
19
85
69
4
3
22
1.21
32059--32090
2
16.0
2
100
0
64
50
0
0
50
1.00
32086--32180
27
3.2
29
75
17
88
66
1
4
28
1.17
32080--32156
11
6.5
11
73
18
50
67
1
2
28
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32078--32179
44
2.2
46
83
11
122
64
0
3
30
1.18
33287--33325
16
2.6
14
88
8
51
43
2
2
51
1.29
33787--34562
105
7.4
105
95
0
1284
23
17
25
33
1.97
35379--35439
8
7.6
8
96
0
113
1
0
11
86
0.63
35379--35442
1
64.0
1
74
0
56
1
0
10
87
0.61
44871--44905
10
3.5
10
88
0
52
74
0
5
20
1.02
45880--45967
27
3.3
27
75
9
90
60
1
11
27
1.38
46233--46312
2
42.0
2
78
9
69
57
1
1
40
1.15
47453--47491
16
2.6
14
88
8
51
43
2
2
51
1.29
47627--48716
106
10.3
106
94
0
1837
33
25
18
22
1.97
49424--49541
39
3.2
35
79
15
105
44
5
7
42
1.55
49452--49652
108
1.9
109
83
11
270
46
4
6
42
1.51
49392--49702
35
8.6
35
72
18
162
45
5
8
41
1.56
49586--49653
32
2.1
32
84
10
86
44
4
5
45
1.48
49717--49758
15
2.6
16
85
11
50
35
2
4
57
1.33
49759--49807
18
2.7
18
87
9
64
18
10
0
71
1.13
49768--49803
9
3.8
10
85
14
58
19
8
0
72
1.10
51333--51365
13
2.5
13
86
13
50
18
3
6
72
1.18
65335--65372
20
2.0
19
90
10
60
23
18
5
52
1.65
66011--66041
14
2.2
14
94
0
53
58
0
0
41
0.98
74227--74258
3
10.7
3
93
0
55
65
0
3
31
1.08
93845--93877
17
1.9
17
100
0
66
45
6
18
30
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93951--94280
165
2.0
165
94
0
579
27
8
13
50
1.71
96203--96228
7
3.7
7
100
0
52
84
0
15
0
0.62
98566--98611
3
15.0
3
86
4
65
30
2
2
65
1.16
112775--113045
141
1.9
141
86
4
386
26
29
18
24
1.98
113008--113074
23
3.2
23
64
24
65
23
31
17
26
1.97
113009--113111
40
2.6
40
93
0
170
21
32
17
29
1.96
113009--113157
40
3.7
40
84
4
165
22
30
18
28
1.97
113313--113354
3
13.7
3
85
5
57
28
2
2
66
1.16

Tables:   1

The End!