Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001123.1 Hibiscus syriacus cultivar Beakdansim tig00002221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102309

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4862--4900
16
2.5
15
92
8
69
33
25
5
35
1.78
5307--5365
23
2.6
23
83
2
75
61
15
10
13
1.57
5314--5435
23
5.5
23
73
9
92
59
14
9
16
1.61
5645--5691
23
2.0
23
87
0
67
53
19
12
14
1.73
10083--10337
20
12.6
20
78
6
183
39
20
21
18
1.93
10187--10337
40
3.7
40
85
2
203
35
19
24
20
1.95
10187--10335
60
2.4
60
87
5
210
36
18
24
20
1.95
10425--10481
6
9.5
6
100
0
114
33
50
15
0
1.44
11167--11253
6
14.5
6
100
0
174
0
16
50
33
1.45
11363--11573
20
10.4
20
88
5
307
23
24
16
36
1.94
11608--11661
20
2.7
20
94
0
90
11
18
18
51
1.74
11648--11698
19
2.6
20
90
3
77
15
17
23
43
1.88
15392--15424
12
2.6
13
85
9
50
63
0
0
36
0.95
21218--21381
81
2.0
81
100
0
328
45
13
15
25
1.83
26386--26412
12
2.2
12
100
0
54
37
11
22
29
1.89
28558--28587
15
2.0
15
93
0
51
13
23
46
16
1.82
45462--45505
23
2.0
22
83
16
56
38
4
0
56
1.20
50087--50162
39
1.9
39
94
0
134
23
14
26
35
1.93
51362--51420
26
2.3
25
93
0
73
37
16
0
45
1.48
55037--55062
11
2.4
11
100
0
52
50
7
0
42
1.31
57662--57700
15
2.6
15
83
0
51
56
0
0
43
0.99
58269--58447
59
3.0
59
86
3
236
33
16
20
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60476--60516
20
2.0
20
86
9
57
43
4
0
51
1.23
61526--61592
19
3.6
18
78
9
71
34
5
2
56
1.39
66802--66866
23
3.0
22
79
16
82
47
0
0
52
1.00
69899--69950
2
26.0
2
92
0
86
46
0
0
53
1.00
70343--70599
64
4.0
64
94
1
451
39
8
5
46
1.58
70344--70601
129
2.0
128
95
0
462
39
7
5
46
1.57
70975--71038
23
2.8
23
80
0
83
26
17
15
40
1.89
75797--75881
35
2.4
32
73
17
80
28
8
10
52
1.64
79833--79868
19
1.9
18
88
5
54
50
0
2
47
1.15
80981--81034
19
3.1
19
65
29
55
14
29
33
22
1.94
80968--81034
34
1.9
35
93
6
118
17
28
32
20
1.96
87814--87883
36
1.9
36
88
5
106
20
32
25
21
1.97
88490--88524
15
2.3
15
95
0
61
17
22
31
28
1.96
91434--91472
21
1.9
21
89
5
62
35
5
0
58
1.20
91820--91857
17
2.4
16
86
8
51
55
10
10
23
1.65
91825--91863
17
2.4
17
91
4
62
48
12
12
25
1.77
97719--97749
15
2.1
15
100
0
62
19
19
41
19
1.90
101104--101170
28
2.4
28
97
2
127
43
26
10
19
1.83

Tables:   1

The End!