Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001125.1 Hibiscus syriacus cultivar Beakdansim tig00002225_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111750

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3547--3578
3
10.7
3
93
0
55
31
3
0
65
1.08
11757--11787
14
2.2
14
100
0
62
38
0
0
61
0.96
11754--11790
8
5.0
8
84
15
53
40
0
0
59
0.97
14007--14070
22
3.0
21
77
8
60
54
0
4
40
1.21
14437--14474
20
2.0
20
89
5
60
50
2
2
44
1.30
14947--14971
6
4.2
6
100
0
50
16
16
16
52
1.76
15055--15089
3
11.7
3
100
0
70
34
0
0
65
0.93
16661--16685
2
12.5
2
100
0
50
48
0
0
52
1.00
31717--31763
24
2.0
24
91
0
76
55
6
12
25
1.61
45333--45412
24
3.2
26
74
18
71
55
0
0
45
0.99
45370--45409
19
2.1
19
85
0
53
55
0
0
45
0.99
45430--45475
12
3.9
12
88
2
67
30
47
10
10
1.73
45430--45475
24
2.0
24
91
4
76
30
47
10
10
1.73
49634--49723
20
4.5
20
92
0
144
45
24
11
18
1.82
49882--49924
22
2.0
22
85
0
59
23
39
13
23
1.90
50249--50295
20
2.3
22
79
20
66
48
23
14
12
1.78
50296--50389
20
4.8
20
81
1
73
15
14
19
50
1.79
50296--50371
20
3.8
20
82
1
91
13
17
19
50
1.78
51890--51982
45
2.1
45
100
0
186
21
45
4
29
1.71
51856--51985
45
2.5
57
78
18
149
20
46
5
26
1.72
52525--52623
21
4.7
21
80
5
110
23
33
21
22
1.97
52550--52643
42
2.2
42
86
3
127
22
37
22
18
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56495--56541
24
2.0
24
87
8
69
55
0
0
44
0.99
56507--56548
20
2.2
20
87
8
61
52
0
0
47
1.00
57562--57615
21
2.5
22
79
8
67
48
0
0
51
1.00
64054--64118
24
2.8
23
81
9
71
21
35
24
18
1.96
64100--64139
21
2.0
21
85
5
55
27
37
25
10
1.88
65482--66046
282
2.0
282
97
2
1064
29
22
21
26
1.99
67564--67731
84
2.0
84
93
4
286
30
14
25
29
1.95
68860--68920
32
1.9
32
100
0
122
19
22
34
22
1.97
69446--69889
222
2.0
222
98
0
852
33
18
20
27
1.96
91395--91482
10
8.1
10
69
16
59
12
11
17
59
1.62
94136--94198
29
2.1
29
88
2
90
28
30
22
19
1.98
94187--94284
31
3.2
30
78
13
117
32
18
19
29
1.96
95623--95667
21
2.1
21
87
0
63
15
24
28
31
1.96
96537--96676
36
3.9
35
80
10
151
38
21
22
17
1.93
96532--96676
72
2.0
71
89
6
222
40
20
22
17
1.92
98068--98172
47
2.2
47
98
0
201
28
12
21
37
1.90
107126--107152
2
13.5
2
100
0
54
51
0
0
48
1.00
107189--107220
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!