genome.fa.s1126.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001126.1 Hibiscus syriacus cultivar Beakdansim tig00002226_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132545

Tables:   1   

This is table  1  of  1  ( 114 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--706	123	5.7	126	94	3	1276	21	25	20	32	1.98
1--704	245	2.9	247	94	4	1237	21	25	20	32	1.97
1--706	371	1.9	369	95	3	1285	21	25	20	32	1.98
1078--1179	33	3.0	33	84	7	125	37	2	4	54	1.37
1696--1788	21	4.5	21	89	8	120	19	26	35	18	1.95
3372--3419	16	2.8	16	81	12	51	62	4	0	33	1.14
3534--3612	34	2.5	31	81	10	88	60	1	0	37	1.05
10162--10219	21	2.8	21	91	0	98	24	15	36	24	1.94
10301--10358	30	1.9	30	96	0	107	46	18	1	32	1.60
11630--11677	19	2.5	20	82	3	62	29	12	6	52	1.63
12457--12527	34	2.1	33	89	2	106	22	29	15	32	1.95
12988--13044	21	2.7	21	91	0	96	24	17	33	24	1.96
12989--13013	13	1.9	13	100	0	50	24	20	32	24	1.98
12943--13044	42	2.5	40	80	12	116	24	17	31	26	1.97
13126--13183	30	1.9	30	96	0	107	46	18	1	32	1.60
14177--14232	21	2.7	21	83	5	69	25	26	21	26	1.99
14181--14238	21	2.8	21	79	7	64	29	25	22	22	1.99
16423--16470	11	4.4	11	78	5	53	54	0	2	43	1.12
16919--16951	2	16.5	2	100	0	66	51	0	0	48	1.00
25008--25050	18	2.4	17	81	11	50	32	0	2	65	1.06
27776--27817	21	2.0	22	85	4	59	23	26	21	28	1.99
28927--28990	20	3.2	20	68	16	51	42	3	17	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32270--32306	19	1.9	19	94	0	65	32	29	16	21	1.95
32393--32445	20	2.7	20	90	0	88	41	16	20	20	1.90
32455--32561	20	5.3	20	83	6	135	28	27	21	22	1.99
32434--32561	41	3.1	41	82	6	170	29	27	21	21	1.98
33383--33460	24	3.2	24	96	0	138	20	20	20	38	1.94
33650--33686	14	2.6	14	91	4	56	51	21	18	8	1.72
35723--35757	18	1.9	18	94	0	61	54	25	2	17	1.57
35935--36229	20	15.7	20	73	12	205	35	21	20	22	1.96
35974--36116	54	2.6	54	91	0	223	37	20	20	20	1.94
35940--36241	74	4.1	73	79	5	313	37	21	19	21	1.95
36308--36411	54	1.9	55	96	2	192	51	16	2	28	1.58
36378--36443	30	2.2	30	91	0	114	53	13	1	31	1.49
37812--37918	21	5.1	21	75	0	106	22	18	38	20	1.94
37814--37923	42	2.6	42	81	2	132	23	19	38	19	1.93
38400--38443	20	2.2	20	95	0	79	52	20	11	15	1.74
38430--38497	20	3.4	20	89	0	100	36	25	16	22	1.94
38470--38550	33	2.4	33	91	2	126	40	24	19	14	1.90
38490--38550	14	4.0	14	73	19	50	42	24	21	11	1.86
38489--38561	33	2.2	33	87	4	103	41	24	19	15	1.89
38556--38715	20	8.6	20	74	15	119	20	21	21	36	1.95
38558--38704	74	2.0	74	98	0	285	21	22	21	35	1.96
40719--40810	20	4.7	20	82	2	96	40	22	19	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41153--41230	22	3.5	22	84	5	104	20	14	43	21	1.87
41395--41459	20	3.2	20	93	0	103	26	16	29	27	1.97
41469--41521	20	2.7	20	93	0	88	22	20	16	39	1.92
41595--41641	19	2.4	19	82	3	58	25	14	29	29	1.95
41607--41643	19	1.9	19	94	0	65	21	16	29	32	1.95
42550--42582	13	2.5	13	100	0	66	36	6	0	57	1.23
46186--46308	63	2.0	63	82	6	151	41	8	5	43	1.59
48848--48929	30	2.8	29	71	12	76	45	2	18	34	1.63
51659--51751	18	5.2	18	80	6	91	30	12	11	45	1.78
51659--51750	35	2.6	35	77	6	87	29	13	11	45	1.79
51701--51760	18	3.3	18	88	4	68	28	10	13	48	1.74
57891--58106	45	4.8	45	95	0	369	28	13	21	36	1.91
63028--63078	20	2.6	20	90	3	77	35	15	5	43	1.71
63502--63551	19	2.6	20	84	12	61	24	12	0	64	1.27
63821--63845	8	3.1	8	100	0	50	76	0	24	0	0.80
63804--63855	16	3.1	16	81	13	52	75	1	21	1	1.00
67213--67263	20	2.6	20	90	3	77	35	15	5	43	1.71
67687--67736	19	2.6	20	84	12	61	24	12	0	64	1.27
70630--70735	10	10.4	10	79	15	103	79	0	13	7	0.93
70623--70770	51	3.0	49	80	15	169	78	0	12	8	0.96
70694--70769	27	2.9	27	81	13	97	80	0	11	7	0.91
70650--70804	66	2.3	66	81	15	187	77	0	14	7	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70650--70770	7	17.1	7	74	19	76	79	0	13	7	0.93
70827--70911	45	1.9	44	85	2	116	36	17	29	16	1.92
72109--72181	37	2.0	37	88	0	110	38	19	20	21	1.94
72200--72397	110	1.8	110	84	4	274	30	15	25	29	1.95
72200--72405	55	3.7	55	82	5	229	29	16	24	29	1.96
73744--73806	32	2.0	32	90	0	99	34	3	19	42	1.67
76841--77051	100	2.1	100	93	0	359	22	12	22	42	1.87
77035--77061	2	13.5	2	100	0	54	0	0	48	51	1.00
78082--78370	142	2.0	142	96	0	533	32	19	16	32	1.94
92685--92754	35	2.0	35	97	0	131	35	11	4	48	1.59
94178--94221	21	2.1	21	95	0	79	38	0	0	61	0.96
94153--94231	31	2.5	33	72	12	85	39	0	0	60	0.97
98014--98058	19	2.4	19	89	10	67	11	20	0	68	1.19
102049--102765	355	2.0	355	98	0	1389	34	13	37	14	1.85
106629--106676	23	2.1	23	88	0	69	35	12	18	33	1.89
107402--107438	18	2.1	18	89	0	56	51	10	5	32	1.60
107642--107706	23	2.8	23	90	0	94	38	18	7	35	1.80
108058--108111	23	2.5	20	75	18	54	42	18	1	37	1.61
108073--108135	23	2.7	23	90	0	90	38	19	6	36	1.77
108487--108540	23	2.5	20	75	18	54	42	18	1	37	1.61
108502--108564	23	2.7	23	90	0	90	38	19	6	36	1.77
107644--108662	429	2.4	429	98	1	1974	38	13	8	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111119--111972	183	4.7	184	97	1	1633	34	15	14	35	1.89
111119--111972	367	2.3	369	97	1	1635	34	15	14	35	1.89
113330--113374	3	15.0	3	85	0	63	26	33	2	37	1.69
113334--113410	12	6.4	12	84	0	73	20	35	7	36	1.82
113364--113410	24	2.0	24	95	0	85	17	36	10	36	1.84
113334--113413	6	13.3	6	78	0	61	20	35	7	37	1.81
114872--116456	196	8.1	197	94	3	2771	32	15	15	37	1.88
114872--116456	393	4.0	396	96	2	2852	32	15	15	37	1.88
116549--116593	19	2.4	19	92	0	72	57	8	2	31	1.41
118374--118439	33	2.0	33	87	0	96	24	45	1	28	1.62
124199--124256	23	2.7	22	75	17	59	74	5	1	18	1.10
124202--124246	18	2.5	19	82	10	58	73	6	2	17	1.15
124215--124258	23	1.9	23	86	9	63	75	6	0	18	1.02
124195--124274	13	6.5	12	72	24	53	72	5	1	21	1.11
125163--125221	28	2.1	28	90	0	91	5	20	25	49	1.69
125639--125691	17	3.1	17	72	17	56	75	3	5	15	1.13
125684--125789	36	2.9	37	91	5	171	51	7	0	40	1.30
125776--125801	13	2.0	13	100	0	52	46	0	0	53	1.00
125776--125805	15	2.0	15	100	0	60	46	0	0	53	1.00
125703--125875	86	2.0	88	88	4	262	51	5	0	42	1.30
125792--126029	39	6.3	38	80	7	225	46	7	2	42	1.47
125838--125902	13	5.0	13	68	7	51	49	9	0	41	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125792--126029	38	6.3	39	81	9	235	46	7	2	42	1.47
126014--126044	2	16.0	2	93	6	55	51	0	0	48	1.00
128037--128110	35	2.1	36	94	2	132	31	10	14	43	1.80
128526--128555	15	2.0	15	100	0	60	13	26	46	13	1.80

Tables:   1

The End!