genome.fa.s1127.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001127.1 Hibiscus syriacus cultivar Beakdansim tig00002229_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96353

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3974--4139	90	1.9	89	94	1	296	46	6	11	36	1.65
6919--6952	8	4.1	8	96	3	59	11	0	2	85	0.71
11176--11223	24	2.0	25	83	4	62	52	14	4	29	1.60
14843--14884	21	2.0	21	90	0	66	38	14	9	38	1.78
32000--32118	21	5.4	21	77	13	89	43	3	7	45	1.49
32244--32294	19	2.6	20	90	3	77	43	23	17	15	1.88
32244--32541	20	14.6	20	75	10	174	39	19	21	19	1.92
32348--32539	40	4.7	40	82	5	240	38	17	22	21	1.93
32348--32531	83	2.2	83	94	0	314	37	16	23	22	1.94
32628--32727	5	18.5	6	92	7	123	30	53	17	0	1.44
33417--33472	6	9.5	6	98	1	105	0	16	51	32	1.44
33545--33621	20	3.8	20	91	0	118	22	25	16	35	1.95
33656--33709	20	2.7	20	85	0	72	11	18	18	51	1.74
33696--33746	19	2.6	20	90	3	77	15	17	23	43	1.88
36585--36626	22	1.9	22	90	0	66	21	23	23	30	1.99
37864--37915	25	2.0	26	85	3	70	15	7	0	76	0.99
37864--37915	13	4.1	12	78	9	50	15	7	0	76	0.99
38336--38391	28	2.1	27	83	6	69	33	10	8	46	1.70
39731--39781	20	2.5	20	100	0	102	19	23	11	45	1.83
42694--42759	21	3.2	20	76	4	60	34	9	21	34	1.85
43239--43305	35	1.9	35	87	6	100	32	14	16	35	1.90
46994--47061	31	2.2	29	80	19	77	45	2	0	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48309--48437	64	2.0	64	95	0	231	36	24	9	30	1.87
49778--49851	10	7.1	11	71	11	57	58	2	0	39	1.13
49779--49851	21	3.5	21	72	10	78	57	2	0	39	1.13
49783--49861	20	3.6	23	71	25	80	60	2	0	36	1.10
49769--49860	41	2.3	41	98	1	177	59	2	0	38	1.09
50709--50758	24	2.1	24	85	7	66	26	2	12	60	1.43
51234--51267	17	2.1	16	88	5	50	14	8	0	76	1.01
51644--51676	16	2.0	17	88	5	50	12	6	12	69	1.35
57615--57657	20	2.1	21	87	8	63	13	16	0	69	1.19
61464--61497	17	2.1	16	88	5	50	14	8	0	76	1.01
62931--62969	17	2.2	18	86	4	53	38	2	0	58	1.12
62927--62987	29	2.1	30	84	3	79	40	1	0	57	1.08
62961--63039	16	5.0	16	72	20	76	36	0	0	63	0.95
62962--63030	25	2.9	24	80	18	90	37	0	0	62	0.96
62961--63039	42	1.9	41	84	7	106	36	0	0	63	0.95
62973--63048	13	6.2	13	73	18	65	35	1	0	63	1.03
63491--63526	17	2.1	17	89	0	54	61	2	8	27	1.39
65293--65319	2	13.5	2	100	0	54	48	0	0	51	1.00
66780--66804	2	12.5	2	100	0	50	52	0	0	48	1.00
66970--67039	12	5.8	12	70	6	52	51	18	12	17	1.76
66969--67076	24	4.5	24	69	11	87	49	17	12	20	1.79
66966--67076	48	2.3	48	83	6	136	49	17	12	20	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67078--67121	21	2.1	21	100	0	88	45	0	18	36	1.49
72632--73135	171	2.9	170	88	4	739	49	8	13	29	1.71
75016--75085	19	3.4	21	70	18	67	37	22	20	20	1.95
75012--75104	40	2.3	42	96	3	172	35	24	19	20	1.96
75037--75110	21	3.6	21	76	7	89	33	27	20	18	1.96
76447--76474	14	2.0	14	100	0	56	42	0	7	50	1.30
78330--78356	2	13.5	2	100	0	54	51	0	0	48	1.00
78766--78807	22	2.0	22	81	13	52	2	7	23	66	1.28
82945--82972	2	14.0	2	100	0	56	50	50	0	0	1.00
84840--84865	12	2.2	12	100	0	52	23	0	53	23	1.46
84846--84940	30	3.2	30	86	0	118	24	9	50	15	1.74
91962--91991	10	3.0	10	95	0	51	43	0	6	50	1.28
92265--92306	18	2.3	18	95	0	75	19	19	35	26	1.95
92265--92317	18	2.9	18	91	0	70	20	18	33	26	1.96

Tables:   1

The End!