Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001129.1 Hibiscus syriacus cultivar Beakdansim tig00002237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21326069
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 10 of 89
Found at i:1816642 original size:13 final size:13
Alignment explanation
Indices: 1816624--1816650 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1816614 AAAACTATAT
1816624 ATATGTTTTCAAA
1 ATATGTTTTCAAA
1816637 ATATGTTTTCAAA
1 ATATGTTTTCAAA
1816650 A
1 A
1816651 CTATATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44
Consensus pattern (13 bp):
ATATGTTTTCAAA
Found at i:1816669 original size:71 final size:74
Alignment explanation
Indices: 1816581--1816737 Score: 189
Period size: 75 Copynumber: 2.1 Consensus size: 74
1816571 TCAAAAATTA
** ** *
1816581 TATATTATATATGTTTTCAAAAAATC-TTTTTAAAA-A-ACTATA-TATATGT-TTTCAAAATAT
1 TATATTATATACATTTTC-AAAAATCGTTTTTAAAATATA-TATATTATACATATTTAAAAATAT
1816641 GTTTTCAAAAC
64 GTTTTCAAAAC
*
1816652 TATATTATATACATTTTCAAAAATCGTTTTTAAAATTATATATATTATACATATTTAAAAATTTG
1 TATATTATATACATTTTCAAAAATCGTTTTTAAAA-TATATATATTATACATATTTAAAAATATG
1816717 TTTTCAAAAC
65 TTTTCAAAAC
*
1816727 TATATAATATA
1 TATATTATATA
1816738 TGTTTTAAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
70 7 0.10
71 25 0.34
73 5 0.07
74 6 0.08
75 30 0.41
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.46
Consensus pattern (74 bp):
TATATTATATACATTTTCAAAAATCGTTTTTAAAATATATATATTATACATATTTAAAAATATGT
TTTCAAAAC
Found at i:1816822 original size:38 final size:36
Alignment explanation
Indices: 1816774--1816870 Score: 126
Period size: 37 Copynumber: 2.7 Consensus size: 36
1816764 CATATTATAT
1816774 ATTTTCAAAAACTATATATTATATTCTTTCAAAAAAC
1 ATTTTCAAAAACTATATATTATATT-TTTCAAAAAAC
* * *
1816811 ATTTTCTAAAAACTATTTATTATATTTTTCAAAATAT
1 ATTTTC-AAAAACTATATATTATATTTTTCAAAAAAC
*
1816848 ATTTTCAAAAA--ATACATTATATT
1 ATTTTCAAAAACTATATATTATATT
1816871 ATTATATATA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
34 10 0.19
36 5 0.09
37 21 0.39
38 18 0.33
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.45
Consensus pattern (36 bp):
ATTTTCAAAAACTATATATTATATTTTTCAAAAAAC
Found at i:1816849 original size:59 final size:58
Alignment explanation
Indices: 1816717--1816849 Score: 148
Period size: 59 Copynumber: 2.3 Consensus size: 58
1816707 TAAAAATTTG
* *
1816717 TTTTCAAAACTATATAATATATGTTTTAAAAAACATATTTTCACAACCATATTATATA
1 TTTTCAAAACTATATAATATATGTTTTAAAAAACATATTTTAAAAACCATATTATATA
* *
1816775 TTTTCAAAAACTATATATTATAT-TCTTTCAAAAAACAT-TTTCTAAAAACTAT-TTATTATA
1 TTTTC-AAAACTATATAATATATGT-TTT-AAAAAACATATTT-TAAAAACCATATTA-TATA
1816835 TTTTTCAAAA-TATAT
1 -TTTTCAAAACTATAT
1816850 TTTCAAAAAA
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
58 6 0.09
59 30 0.46
60 24 0.37
61 5 0.08
ACGTcount: A:0.44, C:0.11, G:0.01, T:0.44
Consensus pattern (58 bp):
TTTTCAAAACTATATAATATATGTTTTAAAAAACATATTTTAAAAACCATATTATATA
Found at i:1825182 original size:24 final size:24
Alignment explanation
Indices: 1825150--1825216 Score: 107
Period size: 24 Copynumber: 2.8 Consensus size: 24
1825140 GGTTAATTAG
*
1825150 TGAAGCTTGTGCTTTTGCAGCTGA
1 TGAAGCTTGTGCTTTTGCAGCGGA
1825174 TGAAGCTTGTGCTTTTGCAGCGGA
1 TGAAGCTTGTGCTTTTGCAGCGGA
* *
1825198 TGATGCGTGTGCTTTTGCA
1 TGAAGCTTGTGCTTTTGCA
1825217 TCAGATGAGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.15, C:0.16, G:0.31, T:0.37
Consensus pattern (24 bp):
TGAAGCTTGTGCTTTTGCAGCGGA
Found at i:1825223 original size:24 final size:24
Alignment explanation
Indices: 1825150--1825224 Score: 96
Period size: 24 Copynumber: 3.1 Consensus size: 24
1825140 GGTTAATTAG
* *
1825150 TGAAGCTTGTGCTTTTGCAGCTGA
1 TGAAGCGTGTGCTTTTGCAGCAGA
* *
1825174 TGAAGCTTGTGCTTTTGCAGCGGA
1 TGAAGCGTGTGCTTTTGCAGCAGA
* *
1825198 TGATGCGTGTGCTTTTGCATCAGA
1 TGAAGCGTGTGCTTTTGCAGCAGA
1825222 TGA
1 TGA
1825225 GTCTCCTTGA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.17, C:0.16, G:0.31, T:0.36
Consensus pattern (24 bp):
TGAAGCGTGTGCTTTTGCAGCAGA
Found at i:1828933 original size:29 final size:28
Alignment explanation
Indices: 1828883--1828937 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
1828873 TTTGAATTAA
1828883 AATGACCAAATTGAAAAGAATTGAAAATC
1 AATGACCAAATTGAAAAGAATT-AAAATC
* **
1828912 AATGATCAAATTGAAATTAATTAAAA
1 AATGACCAAATTGAAAAGAATTAAAA
1828938 GTTGTAAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 4 0.17
29 19 0.83
ACGTcount: A:0.56, C:0.07, G:0.11, T:0.25
Consensus pattern (28 bp):
AATGACCAAATTGAAAAGAATTAAAATC
Found at i:1829960 original size:6 final size:6
Alignment explanation
Indices: 1829951--1829987 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
1829941 GACCTGTTTA
1829951 AAAAAT AAAAAT --AAAT AAATAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAA-AAT AAAAAT AAAAAT AA
1829988 TATATAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
4 4 0.14
6 18 0.64
7 6 0.21
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:1829974 original size:17 final size:17
Alignment explanation
Indices: 1829949--1829982 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1829939 TGGACCTGTT
1829949 TAAAAAATAAAAATAAA
1 TAAAAAATAAAAATAAA
*
1829966 TAAATAATAAAAATAAA
1 TAAAAAATAAAAATAAA
1829983 AATAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
TAAAAAATAAAAATAAA
Found at i:1829980 original size:23 final size:22
Alignment explanation
Indices: 1829951--1829999 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
1829941 GACCTGTTTA
1829951 AAAAATAAAAATAAATAAATAAT
1 AAAAATAAAAAT-AATAAATAAT
*
1829974 AAAAATAAAAATAATATATAAT
1 AAAAATAAAAATAATAAATAAT
1829996 AAAA
1 AAAA
1830000 GCTATATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 13 0.52
23 12 0.48
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (22 bp):
AAAAATAAAAATAATAAATAAT
Found at i:1830036 original size:17 final size:17
Alignment explanation
Indices: 1830016--1830048 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1830006 TAATATTATA
1830016 TTTTCAAAAATAATATG
1 TTTTCAAAAATAATATG
*
1830033 TTTTCAAAAATTATAT
1 TTTTCAAAAATAATAT
1830049 ATTTACGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (17 bp):
TTTTCAAAAATAATATG
Found at i:1830122 original size:37 final size:36
Alignment explanation
Indices: 1830033--1830250 Score: 185
Period size: 37 Copynumber: 5.9 Consensus size: 36
1830023 AAATAATATG
*
1830033 TTTTCAAAAATTATATATT-TACGTTTTCAAAAATCGT
1 TTTTC-AAAACTATATATTATACGTTTTCAAAAAT-GT
*
1830070 TTTT-AAAACTATATATATTATACGTTTTGAAAAATGT
1 TTTTCAAAAC--TATATATTATACGTTTTCAAAAATGT
* * * *
1830107 GTGTTCAAAACTATATAATATATGTTTTCAAAAACGT
1 -TTTTCAAAACTATATATTATACGTTTTCAAAAATGT
*
1830144 ATTTTCAAAACCATAT-TATATA--TTTTCAAAAATGAT
1 -TTTTCAAAACTATATAT-TATACGTTTTCAAAAATG-T
* * * **
1830180 TTTTAAAAACTATATATTATATGCTTTCAAAAAACAT
1 TTTTCAAAACTATATATTATACGTTTTC-AAAAATGT
* *
1830217 TTTCTAAAAACTATATATTATATGTTTTCAAAAA
1 TTT-TCAAAACTATATATTATACGTTTTCAAAAA
1830251 CAAAATTCAA
Statistics
Matches: 151, Mismatches: 18, Indels: 24
0.78 0.09 0.12
Matches are distributed among these distances:
35 32 0.21
36 2 0.01
37 66 0.44
38 46 0.30
39 5 0.03
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.43
Consensus pattern (36 bp):
TTTTCAAAACTATATATTATACGTTTTCAAAAATGT
Found at i:1830175 original size:72 final size:74
Alignment explanation
Indices: 1830003--1830250 Score: 215
Period size: 72 Copynumber: 3.3 Consensus size: 74
1829993 AATAAAAGCT
* * * *
1830003 ATATAATATTATA-TTTTCAAAAATAATATGTTTTCAAAAATTATAT-ATTTACGTTTTCAAAAA
1 ATAT-ATATTATACTTTTCAAAAATGAT-TG--TT-AAAAACTATATAATATATGTTTTCAAAAA
*
1830066 TCGTTTTTAAAACT
61 TCGTTTTTAAAACC
* *
1830080 ATATATATTATACGTTTTGAAAAATG-TGTGTTCAAAACTATATAATATATGTTTTCAAAAA-CG
1 ATATATATTATAC-TTTTCAAAAATGAT-TGTTAAAAACTATATAATATATGTTTTCAAAAATCG
1830143 TATTTTCAAAACC
64 T-TTTT-AAAACC
* * * * *
1830156 ATAT-TA-TATA-TTTTCAAAAATGATTTTTAAAAACTATATATTATATGCTTTCAAAAAACATT
1 ATATATATTATACTTTTCAAAAATGATTGTTAAAAACTATATAATATATGTTTTCAAAAATCGTT
*
1830218 TTCTAAAAAC
66 TT-TAAAACC
*
1830228 -TATATATTATATGTTTTCAAAAA
1 ATATATATTATA-CTTTTCAAAAA
1830251 CAAAATTCAA
Statistics
Matches: 144, Mismatches: 15, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
71 3 0.02
72 50 0.35
73 8 0.06
74 16 0.11
75 33 0.23
76 17 0.12
77 7 0.05
78 10 0.07
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.43
Consensus pattern (74 bp):
ATATATATTATACTTTTCAAAAATGATTGTTAAAAACTATATAATATATGTTTTCAAAAATCGTT
TTTAAAACC
Found at i:1830982 original size:58 final size:60
Alignment explanation
Indices: 1830910--1831051 Score: 159
Period size: 58 Copynumber: 2.4 Consensus size: 60
1830900 ATTTTACATT
* * *
1830910 TTAACATTAAAAATATATTTTATTTCA-ATATGAACTTATTAAATAT-TTTTTGT-TCTTGTC
1 TTAAC-TTAAAAATATATTTTATTTCATATATGAACTTA-AAAATATATTTTAGTCT-TTATC
* * * *
1830970 TTAACTT-AAAATATATTTTA-TTCATATTTTATCTTAAAAATATATTTTAGTCTTTATT
1 TTAACTTAAAAATATATTTTATTTCATATATGAACTTAAAAATATATTTTAGTCTTTATC
1831028 TTAACTTAAAAATATATTTTATTT
1 TTAACTTAAAAATATATTTTATTT
1831052 GTAACACCCT
Statistics
Matches: 70, Mismatches: 7, Indels: 10
0.80 0.08 0.11
Matches are distributed among these distances:
57 10 0.14
58 37 0.53
59 16 0.23
60 7 0.10
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.54
Consensus pattern (60 bp):
TTAACTTAAAAATATATTTTATTTCATATATGAACTTAAAAATATATTTTAGTCTTTATC
Found at i:1831030 original size:30 final size:29
Alignment explanation
Indices: 1830907--1831048 Score: 119
Period size: 30 Copynumber: 4.8 Consensus size: 29
1830897 TTAATTTTAC
*
1830907 ATTTTAACATTAAAAATATATTTTATTTCA-
1 ATTTTAAC-TTAAAAATATATTTTA-GTCAT
* * * * *
1830937 ATATGAACTTATTAAATAT-TTTTTGTTCTT
1 ATTTTAACTTA-AAAATATATTTTAG-TCAT
* * *
1830967 GTCTTAACTT-AAAATATATTTTATTCAT
1 ATTTTAACTTAAAAATATATTTTAGTCAT
* *
1830995 ATTTTATCTTAAAAATATATTTTAGTCTTT
1 ATTTTAACTTAAAAATATATTTTAGTC-AT
1831025 ATTTTAACTTAAAAATATATTTTA
1 ATTTTAACTTAAAAATATATTTTA
1831049 TTTGTAACAC
Statistics
Matches: 87, Mismatches: 19, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
28 16 0.18
29 28 0.32
30 43 0.49
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.53
Consensus pattern (29 bp):
ATTTTAACTTAAAAATATATTTTAGTCAT
Found at i:1833281 original size:24 final size:23
Alignment explanation
Indices: 1833254--1833337 Score: 78
Period size: 24 Copynumber: 3.3 Consensus size: 23
1833244 TAATTAATTC
1833254 TTATTTTAACTTAAAACATATATT
1 TTATTTTAACTTAAAA-ATATATT
1833278 TTATTCTTATCTTAACTTAAAAATATATT
1 TTA----T-T-TTAACTTAAAAATATATT
* *
1833307 TTATTTTAGCTACAAAAATATATT
1 TTATTTTAACT-TAAAAATATATT
1833331 TTATTTT
1 TTATTTT
1833338 TAGCTTAACT
Statistics
Matches: 51, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
23 5 0.10
24 22 0.43
25 1 0.02
28 1 0.02
29 11 0.22
30 11 0.22
ACGTcount: A:0.38, C:0.08, G:0.01, T:0.52
Consensus pattern (23 bp):
TTATTTTAACTTAAAAATATATT
Found at i:1833284 original size:30 final size:29
Alignment explanation
Indices: 1833250--1833390 Score: 134
Period size: 30 Copynumber: 5.0 Consensus size: 29
1833240 AATGTAATTA
*
1833250 ATTCTTATTTTAACTTAAAACATATATTTT
1 ATTCTTATCTTAACTTAAAA-ATATATTTT
1833280 ATTCTTATCTTAACTTAAAAATATATTTT
1 ATTCTTATCTTAACTTAAAAATATATTTT
*
1833309 ATT-TTAGC-T-AC--AAAAATATATTTT
1 ATTCTTATCTTAACTTAAAAATATATTTT
* * *
1833333 ATTTTTAGCTTAAC-TACAAAAAATATATTT
1 ATTCTTATCTTAACTTA-AAAATATAT-TTT
* * *
1833363 ATTTTTATCTTAAATTTAAAAT-TATTTT
1 ATTCTTATCTTAACTTAAAAATATATTTT
1833391 TAGAATAAAA
Statistics
Matches: 97, Mismatches: 7, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
24 16 0.16
25 5 0.05
26 3 0.03
27 3 0.03
28 8 0.08
29 23 0.24
30 38 0.39
31 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.01, T:0.51
Consensus pattern (29 bp):
ATTCTTATCTTAACTTAAAAATATATTTT
Found at i:1833417 original size:20 final size:20
Alignment explanation
Indices: 1833389--1833429 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
1833379 TAAAATTATT
*
1833389 TTTAGAATAA-AATATAAATA
1 TTTAAAATAAGAATA-AAATA
1833409 TTTAAAATAAGAATAAAATA
1 TTTAAAATAAGAATAAAATA
1833429 T
1 T
1833430 ATATTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (20 bp):
TTTAAAATAAGAATAAAATA
Found at i:1833431 original size:22 final size:21
Alignment explanation
Indices: 1833379--1833431 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
1833369 ATCTTAAATT
* *
1833379 TAAAATTATTTTTAGAATAAAA
1 TAAAA-TATATTTAAAATAAAA
*
1833401 TATAA-ATATTTAAAATAAGAA
1 TAAAATATATTTAAAATAA-AA
1833422 TAAAATATAT
1 TAAAATATAT
1833432 ATTTTAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 11 0.44
21 6 0.24
22 8 0.32
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (21 bp):
TAAAATATATTTAAAATAAAA
Found at i:1833461 original size:30 final size:29
Alignment explanation
Indices: 1833408--1833522 Score: 126
Period size: 30 Copynumber: 3.9 Consensus size: 29
1833398 AAATATAAAT
1833408 ATTTAAAATAAGAATAAAATATATATTTTA
1 ATTTAAAATAAGAATAAAATATAT-TTTTA
* * * *
1833438 ATTTAAGATAATATTAAATTATATTTTTTA
1 ATTTAAAATAAGAATAAAATATA-TTTTTA
*
1833468 AATTAAAATAAGAATAAAATATATTTTT-
1 ATTTAAAATAAGAATAAAATATATTTTTA
*
1833496 ATGTTATAGA-AAGAATAAAATATATTT
1 AT-TTA-AAATAAGAATAAAATATATTT
1833523 AATATGTTAT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
28 1 0.01
29 25 0.35
30 44 0.62
31 1 0.01
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (29 bp):
ATTTAAAATAAGAATAAAATATATTTTTA
Found at i:1833509 original size:29 final size:29
Alignment explanation
Indices: 1833410--1833537 Score: 116
Period size: 30 Copynumber: 4.3 Consensus size: 29
1833400 ATATAAATAT
*
1833410 TTAAAATAAGAATAAAATATATATTTTAAT-
1 TTAAGATAAGAATAAAATATAT-TTTT-ATG
* * * **
1833440 TTAAGATAATATTAAATTATATTTTTTAAA
1 TTAAGATAAGAATAAAATATA-TTTTTATG
*
1833470 TTAAAATAAGAATAAAATATATTTTTATG
1 TTAAGATAAGAATAAAATATATTTTTATG
*
1833499 TTATAGA-AAGAATAAAATATATTTAATATG
1 TTA-AGATAAGAATAAAATATATTT-TTATG
*
1833529 TTATGATAA
1 TTAAGATAA
1833538 AAAATATTTT
Statistics
Matches: 79, Mismatches: 14, Indels: 10
0.77 0.14 0.10
Matches are distributed among these distances:
29 29 0.37
30 49 0.62
31 1 0.01
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (29 bp):
TTAAGATAAGAATAAAATATATTTTTATG
Found at i:1834434 original size:16 final size:16
Alignment explanation
Indices: 1834393--1834435 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
1834383 AAAAAACGGC
1834393 GTGACTGGTTAAACAA
1 GTGACTGGTTAAACAA
* *
1834409 GTGACCGGTTAAA-AT
1 GTGACTGGTTAAACAA
1834424 GTAGACTGGTTA
1 GT-GACTGGTTA
1834436 TATTATATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 3 0.13
16 20 0.87
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.28
Consensus pattern (16 bp):
GTGACTGGTTAAACAA
Found at i:1834528 original size:23 final size:23
Alignment explanation
Indices: 1834481--1834528 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
1834471 AATAAAATAT
**
1834481 TAGGTAGCACTTATATAATGTAA
1 TAGGTAGCACTTATATAATAAAA
*
1834504 TAGGTAGCGCTTATATAATAAAA
1 TAGGTAGCACTTATATAATAAAA
1834527 TA
1 TA
1834529 TGTTAATTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (23 bp):
TAGGTAGCACTTATATAATAAAA
Found at i:1834656 original size:23 final size:23
Alignment explanation
Indices: 1834630--1834679 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
1834620 ATCAAGCACA
1834630 ATAACATATTAGGTAGCGCTTAT
1 ATAACATATTAGGTAGCGCTTAT
*
1834653 ATAACGTATTAGGTAGCGCTTAT
1 ATAACATATTAGGTAGCGCTTAT
1834676 ATAA
1 ATAA
1834680 TAAAACAGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (23 bp):
ATAACATATTAGGTAGCGCTTAT
Found at i:1834689 original size:23 final size:23
Alignment explanation
Indices: 1834640--1834689 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
1834630 ATAACATATT
** **
1834640 AGGTAGCGCTTATATAACGTATT
1 AGGTAGCGCTTATATAACAAAAC
*
1834663 AGGTAGCGCTTATATAATAAAAC
1 AGGTAGCGCTTATATAACAAAAC
1834686 AGGT
1 AGGT
1834690 TAATTACTTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30
Consensus pattern (23 bp):
AGGTAGCGCTTATATAACAAAAC
Found at i:1834741 original size:158 final size:158
Alignment explanation
Indices: 1834453--1834992 Score: 848
Period size: 158 Copynumber: 3.4 Consensus size: 158
1834443 TCATTTAACC
* * * *
1834453 GGAAATATTATCAAGTACAATAAAATATTAGGTAGCACTTATATAATGTAATAGGTAGCGCTTAT
1 GGAAACATTATCAAGCACAATAACATATTAGGTAGCACTTATATAACGTAATAGGTAGCGCTTAT
* * *
1834518 ATAATAAAATATGTTAATTACTTAATTTGTTATTATAACATATTAGGTAAATGCCTAAAATGTTA
66 ATAATAAAATAGGTTAATTACTTAATTTGTTATTACAACATATTAGGTAAACGCCTAAAATGTTA
* *
1834583 CAAAGGATAACATAACTGGTTAATTACT
131 CCAAGGATAACATAACCGGTTAATTACT
* *
1834611 GGAAACATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAACGTATTAGGTAGCGCTTAT
1 GGAAACATTATCAAGCACAATAACATATTAGGTAGCACTTATATAACGTAATAGGTAGCGCTTAT
* *
1834676 ATAATAAAACAGGTTAATTACTTAATTTGTTATTACAACATATTAGTTAAACGCCTAAAATGTTA
66 ATAATAAAATAGGTTAATTACTTAATTTGTTATTACAACATATTAGGTAAACGCCTAAAATGTTA
* *
1834741 CCAAGAATAACATAACCAGTTAATTACT
131 CCAAGGATAACATAACCGGTTAATTACT
* *
1834769 GGAAACATTATCAAGCACAATAATATATTAGGTAGCACTTATATAACATAATAGGTAGCGCTTAT
1 GGAAACATTATCAAGCACAATAACATATTAGGTAGCACTTATATAACGTAATAGGTAGCGCTTAT
* **
1834834 ATAATAAAATAGGTTAATTACTTAATTTGTTATTACAACATATTAGGCAAACTTCTAAAATGTTA
66 ATAATAAAATAGGTTAATTACTTAATTTGTTATTACAACATATTAGGTAAACGCCTAAAATGTTA
1834899 CCAAGGATAACATAACCGGTTAATTACT
131 CCAAGGATAACATAACCGGTTAATTACT
* * *
1834927 GGAAACATTATCAAGCATAATAACATATTAGGTAG-AGCTTATGTAACGTAATAGGTTGCGCATT
1 GGAAACATTATCAAGCACAATAACATATTAGGTAGCA-CTTATATAACGTAATAGGTAGCGC-TT
1834991 AT
64 AT
1834993 TAAAGCTGAT
Statistics
Matches: 349, Mismatches: 31, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
157 1 0.00
158 344 0.99
159 4 0.01
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (158 bp):
GGAAACATTATCAAGCACAATAACATATTAGGTAGCACTTATATAACGTAATAGGTAGCGCTTAT
ATAATAAAATAGGTTAATTACTTAATTTGTTATTACAACATATTAGGTAAACGCCTAAAATGTTA
CCAAGGATAACATAACCGGTTAATTACT
Found at i:1834823 original size:23 final size:23
Alignment explanation
Indices: 1834788--1834847 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
1834778 ATCAAGCACA
*
1834788 ATAATATATTAGGTAGCACTTAT
1 ATAATATAATAGGTAGCACTTAT
* *
1834811 ATAACATAATAGGTAGCGCTTAT
1 ATAATATAATAGGTAGCACTTAT
*
1834834 ATAATAAAATAGGT
1 ATAATATAATAGGT
1834848 TAATTACTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.33
Consensus pattern (23 bp):
ATAATATAATAGGTAGCACTTAT
Found at i:1835447 original size:2 final size:2
Alignment explanation
Indices: 1835440--1835469 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1835430 TAAGTATGGA
1835440 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1835470 TGTGTGCGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1837329 original size:21 final size:22
Alignment explanation
Indices: 1837289--1837331 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
1837279 AAACACACGT
1837289 AATTTAAAAAACTATCGATACA
1 AATTTAAAAAACTATCGATACA
*
1837311 AATTTAAAAAA-TATTGATACA
1 AATTTAAAAAACTATCGATACA
1837332 TTATGTAGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.56, C:0.09, G:0.05, T:0.30
Consensus pattern (22 bp):
AATTTAAAAAACTATCGATACA
Found at i:1837959 original size:198 final size:199
Alignment explanation
Indices: 1837295--1839671 Score: 2647
Period size: 198 Copynumber: 11.8 Consensus size: 199
1837285 ACGTAATTTA
* * * * *
1837295 AAAAACTATCGATACAAATTTAAAAAATATTGATACATTATGTAGACCTATTTTCTAATTAAA-T
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAACT
* * * **
1837359 CGGTATATTTCTATCGGTCAAATTGTAAATTTACCTATTACATTATAAATATCGGCCTCGATGTT
66 -GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTT
* *
1837424 TTTGGGATCGATACAATTTTAAATGTATTGACACTTTATGCGTGCACCTTGTTGGGCATTCATT-
130 TTTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTC
*
1837488 TGGAA
195 TGGAC
* * * * * *
1837493 AAAAAGTATCGACAAAAATTTAAAAAGTGTCGATACATTATATAGACCTATTTGCTCATAAAACC
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAACT
* **
1837558 GGTATATTTATA-CAGGTTACATTGTAAATTTACCTATTACATTATAATTATTAGTTTCGATGTT
66 GGTATATTTCTATC-GGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTT
* * * * *
1837622 TTTGGGGTCGATAC--TTTT-AA-GTATCGAAACCTCATGCGTGTACCTCGTTTGGGCATTCATT
130 TTTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTCG-TTGGGCATTCATT
1837683 CTGGAC
194 CTGGAC
** * * *
1837689 AAAAAGTATCGACACAAA-TTAAAACTTGTCGATAAAGTATGTTGACCTATTTTCTAATTAAA-T
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAACT
* *
1837752 CGGTATATTTATATCGGTTACATTGTAAATTTACCTATTACATTATAATTACCGGTTTCGATG-T
66 -GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTT
* * **
1837816 TTTGGGATCAATAC-TTTTATCAAATGTATCGACAC-CAATGCGTGCACCTCGTTGGGCATTCAT
130 TTTGGGATCGATACAATTT-T-AAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCAT
*
1837879 TATGGAC
193 TCTGGAC
* * * *
1837886 AATAAGTATCGACTCAAATTTAAAAAGTGTCAATACATTATGTTGACCTATTTTCTAATTAAACT
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAACT
* * * * *
1837951 GGTATATTTCTACCGGTTACATTGCAAATTTACCTATTACATTGTAACTATCAGTTTCGATGTTT
66 GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
* * * * *
1838016 TTGGGATTGATACAATTTTAAATGTATCGACACTTTATGCGTGCACATAGTTTGTCATTCATTCT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCT
1838081 GGAC
196 GGAC
1838085 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAAC-
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAACT
* ** * *
1838149 GGTATATTTCTATCGATTACATTACAAATTTACCTATTACATTATAATTATAGGTTTTGATGTTT
66 GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
* ** *
1838214 TTGGTATCGATACTTTTTATAAAAGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTC
131 TTGGGATCGATACAATTT-TAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTC
*
1838279 TGGAT
195 TGGAC
* *
1838284 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATATATTATGTTGACCTATTTTCTAATTAAACT
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAACT
* * * * *
1838349 GGTATATATCTACCGGTTACATTGTAAATTTACCTATTATATTATAATTATCAGTTTCGATATTT
66 GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
* * *
1838414 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGTCATTCATTCT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCT
*
1838479 GGGAA
196 -GGAC
* * * *
1838484 AAAAAATATCGTCACAATTTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAACC
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAACT
* *
1838549 GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTCTCGATGCTT
66 GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
* * * * * *
1838614 TTGGGAT-GATACAATTTTAAATGTATCGACACTTTATGCATGCACCTAGTTTGTCTTTTATTCT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCT
1838678 GGAC
196 GGAC
* * * * * *
1838682 AAAAAGTATCGATACAAATGTAAAAAGTGTCGATACATTATGTAGACCTATTTGCTCATAAAACA
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAACT
* * * *
1838747 GGTATATTTATATCGGTTACATTGTAAATTTACTTATTACATTAGAATTAACGGTTTCGATGTTT
66 GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
* * *
1838812 TTGGGGTCGATAC--TTTTAAAAAAAGTATCGACACCTTATGCGTGCACCTCGTTCGGGCATTCA
131 TTGGGATCGATACAATTTT---AAATGTATCGACACTTTATGCGTGCACCTCGTT-GGGCATTCA
* *
1838875 TTTTGGAAA
192 TTCTGG-AC
* * *
1838884 AAAAAGTATCGACACAAATTTAAAATA-TATCGATACATTATGTTGAACTATTTTCTAATTAAA-
1 AAAAAGTATCGACACAAATTTAAAA-AGTGTCGATACATTATGTAGACCTATTTTCTAATTAAAC
* *
1838947 TCGATATATTTATATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGAT-T
65 T-GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGT
*
1839011 TTTTGGGATCGATAC--TTTTAAAAAAAATGTATCGACA-TCATATGCGTGCACCTCGTTGGGCA
129 TTTTGGGATCGATACAATTTT-----AAATGTATCGACACT-TTATGCGTGCACCTCGTTGGGCA
*
1839073 TTCATTATGGAC
188 TTCATTCTGGAC
* * *
1839085 AATAAGTATCAACACAAATTTAAAAAGTGTCGATACATTATGTTGACCTATTTTCTAATTAAA-T
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAACT
* * *
1839149 CGGTATATTTTTACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCGGTTTCGATGAT
66 -GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATG-T
* * *
1839214 TTTGGGATCGATACAATTTTAAATGGATCGATATAATTTTAAATGTATCGAAACTTTTTGCGTGC
129 TTT----T-G--------------GGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGC
* * * *
1839279 ACCTAGTTTGTCATTCATTCTAGAC
175 ACCTCGTTGGGCATTCATTCTGGAC
* * * * *
1839304 AAAAAGTATCGACAAAAATTTAAAAAGTGTCTACACAAATTTAAAAAGTGTCTATACATTATGTA
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATAC--A-TT----A-TG--TAGAC-CTA--T-
* * * *
1839369 GACCTATTTTCTAATTAAAC-GGTATATTTCTA-CGGGTTACATTGCAAATTTACCTCTTACATT
52 ----T-TTCT-AA-TTAAACTGGTATATTTCTATC-GGTTACATTGTAAATTTACCTATTACATT
* ** *
1839432 ATAATTATAGGTTTCGATGTTTTTGGGATCGATACTTTTTATAAAAGTATCGACACTTTATGCGT
109 ATAATTATCGGTTTCGATGTTTTTGGGATCGATACAATTT-TAAATGTATCGACACTTTATGCGT
* *
1839497 GCATCTCGTTGTGCATTCATTCTGGAC
173 GCACCTCGTTGGGCATTCATTCTGGAC
* *
1839524 AAAAAAGT-TCAACACAAATTTAAAAAGTGTCGATACATTATGTTGACCTATTTTCTAATTAAAC
1 -AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAAC
* * * * *
1839588 CGGTATA--TCTACCAGTTACATTGTAAATTTACCTATTACATTATAATTATTGGTTTCGATATT
65 TGGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGAT-GT
1839651 TTTTGGG-TCGATAC--TTTTAAA
129 TTTTGGGATCGATACAATTTTAAA
1839672 AAATGTATCG
Statistics
Matches: 1862, Mismatches: 234, Indels: 169
0.82 0.10 0.07
Matches are distributed among these distances:
194 34 0.02
195 114 0.06
196 30 0.02
197 39 0.02
198 492 0.26
199 336 0.18
200 237 0.13
201 149 0.08
202 126 0.07
203 37 0.02
207 2 0.00
208 1 0.00
209 2 0.00
210 3 0.00
212 2 0.00
213 1 0.00
217 2 0.00
218 1 0.00
219 83 0.04
220 67 0.04
221 8 0.00
222 11 0.01
224 4 0.00
226 1 0.00
227 2 0.00
229 3 0.00
230 2 0.00
232 1 0.00
233 1 0.00
234 1 0.00
237 1 0.00
238 8 0.00
239 56 0.03
240 5 0.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (199 bp):
AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAACT
GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCT
GGAC
Found at i:1838349 original size:398 final size:399
Alignment explanation
Indices: 1837295--1839671 Score: 2873
Period size: 398 Copynumber: 5.9 Consensus size: 399
1837285 ACGTAATTTA
* * * * *
1837295 AAAAACTATCGATACAAATTTAAAAAATATTGATACATTATGTAGACCTATTTTCTAATTAAATC
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAATC
* * * **
1837360 GGTATATTTCTATCGGTCAAATTGTAAATTTACCTATTACATTATAAATATCGGCCTCGATGTTT
66 GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
** * * *
1837425 TTGGGATCGATACAATTT-TAAATGTATTGACACTTTATGCGTGCACCTTGTTGGGCATTCATT-
131 TTGGGATCGATACTTTTTATAAAAGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTC
* * * * * * *
1837488 TGGAAAAAAAGTATCGACAAAAATTTAAAAAGTGTCGATACATTATATAGACCTATTTGCTCATA
196 TGGACAAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTTGACCTATTTTCTAATT
* * * *
1837553 AAACCGGTATATTTATACAGGTTACATTGTAAATTTACCTATTACATTATAATTATTAGTTTCGA
261 AAACTGGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCAGTTTCGA
* * * * * * *
1837618 TGTTTTTGGGGTCGATAC--TTTT-AA-GTATCGAAACCTCATGCGTGTACCTCGTTTGGGCATT
326 TGTTTTTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTT-GTCATT
1837679 CATTCTGGAC
390 CATTCTGGAC
** * * *
1837689 AAAAAGTATCGACACAAA-TTAAAACTTGTCGATAAAGTATGTTGACCTATTTTCTAATTAAATC
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAATC
* *
1837753 GGTATATTTATATCGGTTACATTGTAAATTTACCTATTACATTATAATTACCGGTTTCGATG-TT
66 GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
* * **
1837817 TTGGGATCAATAC-TTTTATCAAATGTATCGACAC-CAATGCGTGCACCTCGTTGGGCATTCATT
131 TTGGGATCGATACTTTTTAT-AAAAGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATT
* * * *
1837880 ATGGACAATAAGTATCGACTCAAATTTAAAAAGTGTCAATACATTATGTTGACCTATTTTCTAAT
195 CTGGACAAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTTGACCTATTTTCTAAT
* * *
1837945 TAAACTGGTATATTTCTACCGGTTACATTGCAAATTTACCTATTACATTGTAACTATCAGTTTCG
260 TAAACTGGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCAGTTTCG
* *
1838010 ATGTTTTTGGGATTGATACAATTTTAAATGTATCGACACTTTATGCGTGCACATAGTTTGTCATT
325 ATGTTTTTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGTCATT
1838075 CATTCTGGAC
390 CATTCTGGAC
1838085 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAA-C
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAATC
* ** * *
1838149 GGTATATTTCTATCGATTACATTACAAATTTACCTATTACATTATAATTATAGGTTTTGATGTTT
66 GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
*
1838214 TTGGTATCGATACTTTTTATAAAAGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTC
131 TTGGGATCGATACTTTTTATAAAAGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTC
* *
1838279 TGGATAAAAAGTATCGACACAAATTTAAAAAGTGTCGATATATTATGTTGACCTATTTTCTAATT
196 TGGACAAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTTGACCTATTTTCTAATT
* *
1838344 AAACTGGTATATATCTACCGGTTACATTGTAAATTTACCTATTATATTATAATTATCAGTTTCGA
261 AAACTGGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCAGTTTCGA
*
1838409 TATTTTTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGTCATTC
326 TGTTTTTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGTCATTC
*
1838474 ATTCTGGGAA
391 ATTCT-GGAC
* * * *
1838484 AAAAAATATCGTCACAATTTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAACC
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAATC
* *
1838549 GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTCTCGATGCTT
66 GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
** * * * * * * *
1838614 TTGGGAT-GATACAATTT-TAAATGTATCGACACTTTATGCATGCACCTAGTTTGTCTTTTATTC
131 TTGGGATCGATACTTTTTATAAAAGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTC
* * * * * *
1838677 TGGACAAAAAGTATCGATACAAATGTAAAAAGTGTCGATACATTATGTAGACCTATTTGCTCATA
196 TGGACAAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTTGACCTATTTTCTAATT
* * * * * * *
1838742 AAACAGGTATATTTATATCGGTTACATTGTAAATTTACTTATTACATTAGAATTAACGGTTTCGA
261 AAACTGGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCAGTTTCGA
* * * * * *
1838807 TGTTTTTGGGGTCGATAC--TTTTAAAAAAAGTATCGACACCTTATGCGTGCACCTCGTTCGGGC
326 TGTTTTTGGGATCGATACAATTTT---AAATGTATCGACACTTTATGCGTGCACCTAGTT-TGTC
* *
1838870 ATTCATTTTGGAAA
387 ATTCATTCTGG-AC
* * *
1838884 AAAAAGTATCGACACAAATTTAAAATA-TATCGATACATTATGTTGAACTATTTTCTAATTAAAT
1 AAAAAGTATCGACACAAATTTAAAA-AGTGTCGATACATTATGTAGACCTATTTTCTAATTAAAT
* *
1838948 CGATATATTTATATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGAT-TT
65 CGGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTT
* * *
1839012 TTTGGGATCGATACTTTTAAAAAAAATGTATCGACA-TCATATGCGTGCACCTCGTTGGGCATTC
130 TTTGGGATCGATACTTTT-TATAAAA-GTATCGACACT-TTATGCGTGCACCTCGTTGGGCATTC
* * *
1839076 ATTATGGACAATAAGTATCAACACAAATTTAAAAAGTGTCGATACATTATGTTGACCTATTTTCT
192 ATTCTGGACAAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTTGACCTATTTTCT
* * *
1839141 AATTAAA-TCGGTATATTTTTACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCGGT
257 AATTAAACT-GGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCAGT
* *
1839205 TTCGATGATTTTGGGATCGATACAATTTTAAATGGATCGATATAATTTTAAATGTATCGAAACTT
321 TTCGATG-TTTT----T-G--------------GGATCGATACAATTTTAAATGTATCGACACTT
* *
1839270 TTTGCGTGCACCTAGTTTGTCATTCATTCTAGAC
366 TATGCGTGCACCTAGTTTGTCATTCATTCTGGAC
*
1839304 AAAAAGTATCGACAAAAATTTAAAAAGTGTCTACACAAATTTAAAAAGTGTCTATACATTATGTA
1 AAAAAGTAT---C---------------G---ACACAAATTTAAAAAGTGTCGATACATTATGTA
* *
1839369 GACCTATTTTCTAATTAAA-CGGTATATTTCTA-CGGGTTACATTGCAAATTTACCTCTTACATT
45 GACCTATTTTCTAATTAAATCGGTATATTTCTATC-GGTTACATTGTAAATTTACCTATTACATT
*
1839432 ATAATTATAGGTTTCGATGTTTTTGGGATCGATACTTTTTATAAAAGTATCGACACTTTATGCGT
109 ATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTTATAAAAGTATCGACACTTTATGCGT
* * *
1839497 GCATCTCGTTGTGCATTCATTCTGGACAAAAAAGT-TCAACACAAATTTAAAAAGTGTCGATACA
174 GCACCTCGTTGGGCATTCATTCTGGAC-AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACA
* *
1839561 TTATGTTGACCTATTTTCTAATTAAACCGGTATA--TCTACCAGTTACATTGTAAATTTACCTAT
238 TTATGTTGACCTATTTTCTAATTAAACTGGTATATTTCTACCGGTTACATTGTAAATTTACCTAT
** *
1839624 TACATTATAATTATTGGTTTCGATATTTTTTGGG-TCGATAC--TTTTAAA
303 TACATTATAATTATCAGTTTCGAT-GTTTTTGGGATCGATACAATTTTAAA
1839672 AAATGTATCG
Statistics
Matches: 1709, Mismatches: 199, Indels: 129
0.84 0.10 0.06
Matches are distributed among these distances:
391 3 0.00
392 41 0.02
393 236 0.14
394 16 0.01
395 4 0.00
396 95 0.06
397 89 0.05
398 388 0.23
399 112 0.07
400 198 0.12
401 1 0.00
402 4 0.00
403 147 0.09
404 4 0.00
408 1 0.00
409 1 0.00
415 7 0.00
417 6 0.00
418 2 0.00
420 10 0.01
421 11 0.01
422 28 0.02
423 9 0.01
425 4 0.00
432 1 0.00
433 1 0.00
437 53 0.03
438 1 0.00
439 102 0.06
440 68 0.04
441 66 0.04
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (399 bp):
AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAAATC
GGTATATTTCTATCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
TTGGGATCGATACTTTTTATAAAAGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTC
TGGACAAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTTGACCTATTTTCTAATT
AAACTGGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCAGTTTCGA
TGTTTTTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGTCATTC
ATTCTGGAC
Found at i:1839183 original size:20 final size:20
Alignment explanation
Indices: 1839158--1839196 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1839148 TCGGTATATT
*
1839158 TTTACCGGTTACATTGTAAA
1 TTTACCGATTACATTGTAAA
*
1839178 TTTACCTATTACATTGTAA
1 TTTACCGATTACATTGTAA
1839197 TTATCGGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (20 bp):
TTTACCGATTACATTGTAAA
Found at i:1839243 original size:20 final size:20
Alignment explanation
Indices: 1839218--1839264 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
1839208 GATGATTTTG
1839218 GGATCGATACAATTTTAAAT
1 GGATCGATACAATTTTAAAT
*
1839238 GGATCGATATAATTTTAAAT
1 GGATCGATACAATTTTAAAT
*
1839258 GTATCGA
1 GGATCGA
1839265 AACTTTTTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (20 bp):
GGATCGATACAATTTTAAAT
Found at i:1839353 original size:21 final size:21
Alignment explanation
Indices: 1839304--1839357 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
1839294 CATTCTAGAC
* *
1839304 AAAAAGTATCGACAAAAATTT
1 AAAAAGTGTCTACAAAAATTT
*
1839325 AAAAAGTGTCTACACAAATTT
1 AAAAAGTGTCTACAAAAATTT
1839346 AAAAAGTGTCTA
1 AAAAAGTGTCTA
1839358 TACATTATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.52, C:0.11, G:0.11, T:0.26
Consensus pattern (21 bp):
AAAAAGTGTCTACAAAAATTT
Found at i:1841262 original size:18 final size:18
Alignment explanation
Indices: 1841239--1841274 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1841229 GAAATTTATG
1841239 TTGAAATTCAAACTCAAA
1 TTGAAATTCAAACTCAAA
* *
1841257 TTGAAATTTAAATTCAAA
1 TTGAAATTCAAACTCAAA
1841275 CTCCAATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.11, G:0.06, T:0.33
Consensus pattern (18 bp):
TTGAAATTCAAACTCAAA
Found at i:1841293 original size:24 final size:24
Alignment explanation
Indices: 1841239--1841293 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
1841229 GAAATTTATG
1841239 TTGAAATTCAAACTCAAATTGAAA
1 TTGAAATTCAAACTCAAATTGAAA
* *
1841263 TTTAAATTCAAACTCCAATT-AAA
1 TTGAAATTCAAACTCAAATTGAAA
1841286 TATGAAAT
1 T-TGAAAT
1841294 GAACATGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 4 0.15
24 23 0.85
ACGTcount: A:0.49, C:0.13, G:0.05, T:0.33
Consensus pattern (24 bp):
TTGAAATTCAAACTCAAATTGAAA
Found at i:1844673 original size:199 final size:198
Alignment explanation
Indices: 1844234--1845207 Score: 1517
Period size: 199 Copynumber: 4.9 Consensus size: 198
1844224 TGCATAATTT
* *
1844234 AAAAATGTATCGACAGAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTCAAAAAAC
1 AAAAA-GTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAAC
**
1844299 CAATATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCGGTTTCGATG-T
65 CGGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCGGTTTCGATGTT
1844363 TTTGGGATCGATACAATTTTAAATGTATCGACACTTTAT-TCGTGCACCTAGTTTGTCATTCATT
130 TTTGGGATCGATAC-ATTTTAAATGTATCGACACTTTATGT-GTGCACCTAGTTTGTCATTCATT
1844427 CTGGAC
193 CTGGAC
* **
1844433 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACATATTTTCTCATAAAATT
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAACC
* * * * *
1844498 GGTATATTTATATCGGTTACATTGTAAATTTACCTATTACATTATAATAATCGTTTTCGATGTTT
66 GGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCGGTTTCGATGTTT
* ** *
1844563 TTAGGATCGATAC-TTTAATAAATGTATCGACACTTTATGTGTATACCTAATTTGTCATTCATTC
131 TTGGGATCGATACATTT--TAAATGTATCGACACTTTATGTGTGCACCTAGTTTGTCATTCATTC
1844627 TGGAC
194 TGGAC
*
1844632 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCCATTTTCTCATAAAACC
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAACC
* *
1844697 GGTATATTTCTACTGGTTACATTGTAAATTTACCTATTACATTGTAATTATCTGTTTCGATGTTT
66 GGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCGGTTTCGATGTTT
* * *
1844762 TTGAGATCGATACAATTTTAAATGTATCGACATTTTATGCGTGCACCTAGTTTGTCATTCATTCT
131 TTGGGATCGATAC-ATTTTAAATGTATCGACACTTTATGTGTGCACCTAGTTTGTCATTCATTCT
1844827 GGAC
195 GGAC
*
1844831 AAAAAGTATTGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAACC
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAACC
*
1844896 GGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATTGGTTTCGATGTTT
66 GGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCGGTTTCGATGTTT
* *
1844961 TCGGGGTCGATACAATTTTAAATGTATCGACACTTTATGTGTGCACCTAGTTTGTCATTCATTCT
131 TTGGGATCGATAC-ATTTTAAATGTATCGACACTTTATGTGTGCACCTAGTTTGTCATTCATTCT
1845026 GGAC
195 GGAC
* **
1845030 AAAAAGTATCGAAACAAATTTAAAAAGCATCGATACATTATGTAGACCTATTTTCTCATAAAACC
1 AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAACC
** * *
1845095 AATATATTTATACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCGGTTTCGATATTT
66 GGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCGGTTTCGATGTTT
* *
1845160 TTGGGATCGATACTTTTAATAAATGTATCGACATTTTATGT-TG-ACCTA
131 TTGGGATCGATACATTT--TAAATGTATCGACACTTTATGTGTGCACCTA
1845208 TTTTCTATTT
Statistics
Matches: 710, Mismatches: 57, Indels: 17
0.91 0.07 0.02
Matches are distributed among these distances:
197 3 0.00
198 118 0.17
199 564 0.79
200 22 0.03
201 3 0.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.39
Consensus pattern (198 bp):
AAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTCATAAAACC
GGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTGTAATTATCGGTTTCGATGTTT
TTGGGATCGATACATTTTAAATGTATCGACACTTTATGTGTGCACCTAGTTTGTCATTCATTCTG
GAC
Found at i:1845327 original size:128 final size:126
Alignment explanation
Indices: 1845048--1845390 Score: 363
Period size: 128 Copynumber: 2.7 Consensus size: 126
1845038 TCGAAACAAA
* *
1845048 TTTAAAAAGCATCGATACATTATGTAGACCTATTTTCTCATAAAACCAATATATTTATACCGGTT
1 TTTAAAAAGTATCGATACATTATGTTGACCTATTTTCTCATAAAACCAATATATTTATACCGGTT
* * * * *
1845113 ACATTGTAAATTTACCTATTACATTGTAATTATCGGTTTCGATATTTTTGGGATCGATACT
66 ACATTGTAAATTTACCTATTACATTGTAATTATAGGTTTCGATATGTTTAGGATAGATAAT
* ** * ** * *
1845174 TTTAATAAATGTATCGACATTTTATGTTGACCTATTTTCT-ATTTAAACTGATATATTTGTATCG
1 TTTAA-AAA-GTATCGATACATTATGTTGACCTATTTTCTCA-TAAAACCAATATATTTATACCG
*
1845238 GTTACATTGTAAATTTACCTATTACATTGTAATTATAGGTTTCGATGTGTTTAGGATAGATGCAA
63 GTTACATTGTAAATTTACCTATTACATTGTAATTATAGGTTTCGATATGTTTAGGATAGAT--AA
1845303 T
126 T
* * * * *
1845304 TTTAAAAAATATCGATACATTATGTTTA-CTAATTTTGTCATTATAAA--AGTGTATTT-TAACC
1 TTTAAAAAGTATCGATACATTATGTTGACCT-ATTTTCTCA-TA-AAACCAATATATTTAT-ACC
**
1845365 ACTTACATTGTAAATTTACCTATTAC
62 GGTTACATTGTAAATTTACCTATTAC
1845391 TTTAAAGTAA
Statistics
Matches: 179, Mismatches: 29, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
126 5 0.03
127 7 0.04
128 151 0.84
129 6 0.03
130 10 0.06
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.43
Consensus pattern (126 bp):
TTTAAAAAGTATCGATACATTATGTTGACCTATTTTCTCATAAAACCAATATATTTATACCGGTT
ACATTGTAAATTTACCTATTACATTGTAATTATAGGTTTCGATATGTTTAGGATAGATAAT
Found at i:1848376 original size:2 final size:2
Alignment explanation
Indices: 1848369--1848423 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
1848359 ATTATATCAT
1848369 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1848411 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
1848424 TAATGATTAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1849180 original size:16 final size:16
Alignment explanation
Indices: 1849155--1849201 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
1849145 TTATCTAAAA
1849155 ATAA-TTAAAATATTT
1 ATAATTTAAAATATTT
1849170 ATAATTTAAAATATTT
1 ATAATTTAAAATATTT
*
1849186 ATTTATTTAAATATAT
1 A-TAATTTAAA-ATAT
1849202 CAGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 4 0.14
16 12 0.43
17 8 0.29
18 4 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATAATTTAAAATATTT
Found at i:1851056 original size:25 final size:25
Alignment explanation
Indices: 1851028--1851075 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
1851018 AATTTTATAT
* **
1851028 AATAATAATAATAGTATAAATAATA
1 AATAAAAATAATAAAATAAATAATA
1851053 AATAAAAATAATAAAATAAATAA
1 AATAAAAATAATAAAATAAATAA
1851076 ATAATGGATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (25 bp):
AATAAAAATAATAAAATAAATAATA
Found at i:1851436 original size:123 final size:122
Alignment explanation
Indices: 1851290--1852100 Score: 663
Period size: 123 Copynumber: 6.7 Consensus size: 122
1851280 ATGTAATCAT
* * *
1851290 GCAAAGGTTGAACAACTTTTTCTCATTATGAACTTTTTCTTCCTCTTCAGATAAGTTCTTCTCAT
1 GCAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCAT
* *
1851355 TATGAACTTTCTCTGGAAAAGTTGATGCTGATCTATCTCCTTCTACGATAGAGTCGA
66 TATGAACTTTCTCTGGAAAAGTTGATGCTGATCTATCTCCTTCTATGATAGAGTCAA
* *
1851412 GCAAAAGGTTAAACAAGTTATTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCA
1 GC-AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCA
* * * *
1851477 TTACGAACTTTCTCTGTAAAAGTTGATGCTGATCTATCTCCTTATGTGATAGAGTCAA
65 TTATGAACTTTCTCTGGAAAAGTTGATGCTGATCTATCTCCTTCTATGATAGAGTCAA
* * *
1851535 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTGCTCTTCAGATGAGATCTTCTCA
1 GC-AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCA
* * * * *
1851600 TTGTGAAC-TCCTTCTGGAAATGTTGATCCTTGAAAGAGGTGTTGTTGAT-TCAACTTCATATG-
65 TTATGAACTTTC-TCTGGAAAAGTTGATGC-T----GA-----T-CT-ATCTC--CTTC-TATGA
* *
1851662 TAATGAATTAA
114 T-A-GAGTCAA
* * * *
1851673 GGC-AAGGTTGAACAAGTTCTTCTCATTATGAACTTCCTCTTCCTTTTCAGATGAGTTCTTTTCA
1 -GCAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCA
** * * * *
1851737 TTATGAACACT-TATGGAAATGTTGATGTTGATCTATCTCCTTCTGTGATAGAGTCAA
65 TTATGAACTTTCTCTGGAAAAGTTGATGCTGATCTATCTCCTTCTATGATAGAGTCAA
* * * * *
1851794 ACAAAGGTTGAAAAAATTCTTCTTATTATGAACTTCTTCTTCCTCTTTAGATAAGTTCTTCTCAT
1 GCAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCAT
*** * *
1851859 TATGAACTCTTCTCTGGAAAAGTTGAT-C----C-ATC-GAGT-GATG--A-ATTCAA
66 TATGAACT-TTCTCTGGAAAAGTTGATGCTGATCTATCTCCTTCTATGATAGAGTCAA
* * * * * *
1851906 ACAAAAAGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTATTCAGATGAGTTCTTCTC
1 GC-AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATAAGTTCTTCTC
** * * ** *
1851971 ATTATGAAC--TCTACCCG----G-TAATGCTGATCCA--T-C--AAATGAT-GAATTCAA
64 ATTATGAACTTTCT-CTGGAAAAGTTGATGCTGATCTATCTCCTTCTATGATAG-AGTCAA
* * *
1852019 ACAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCCTCTTCCTCTTCAGATGAGTTCTTCTCA
1 GC-AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCA
1852084 TTATGAACTTTCTCTGG
65 TTATGAACTTTCTCTGG
1852101 CAATGCTAAT
Statistics
Matches: 566, Mismatches: 80, Indels: 95
0.76 0.11 0.13
Matches are distributed among these distances:
107 3 0.01
108 2 0.00
110 3 0.01
111 3 0.01
112 38 0.07
113 87 0.15
114 29 0.05
115 2 0.00
116 1 0.00
117 3 0.01
118 1 0.00
120 1 0.00
121 66 0.12
122 9 0.02
123 208 0.37
124 3 0.01
125 3 0.01
126 1 0.00
128 2 0.00
131 2 0.00
133 1 0.00
134 3 0.01
135 3 0.01
136 18 0.03
137 67 0.12
138 5 0.01
139 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (122 bp):
GCAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCAT
TATGAACTTTCTCTGGAAAAGTTGATGCTGATCTATCTCCTTCTATGATAGAGTCAA
Found at i:1852114 original size:112 final size:114
Alignment explanation
Indices: 1851790--1852239 Score: 589
Period size: 113 Copynumber: 4.0 Consensus size: 114
1851780 TGTGATAGAG
* * * *
1851790 TCAAAC-AAAGGTTGAAAAAATTCTTCTTATTATGAACTTCTTCTTCC-TCTTTAGATAAGTTCT
1 TCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
* *
1851853 TCTCATTATGAACTCTTCTCTGGAAAAGTTGATCCATCGAGTGATGAAT
66 TCTCATTATGAACTCTTCTCTGGAAATGCTGATCCATCGAGTGATGAAT
* * *
1851902 TCAAACAAAAAGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTATTCAGATGAGTTCT
1 TCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
* * * * *
1851967 TCTCATTATGAACTCTAC-CCGGTAATGCTGATCCATCAAATGATGAAT
66 TCTCATTATGAACTCTTCTCTGGAAATGCTGATCCATCGAGTGATGAAT
* *
1852015 TCAAACAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCCTCTTCC-TCTTCAGATGAGTTCT
1 TCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
* * *
1852079 TCTCATTATGAACT-TTCTCTGGCAATGCTAATCCATCGGGTGATGAAT
66 TCTCATTATGAACTCTTCTCTGGAAATGCTGATCCATCGAGTGATGAAT
1852127 T-AAAGCAAAAGGTTGAACAAATTCTTCTCATTATGAA---CTTCTTCCTTCTTCAGATGAGTTC
1 TCAAA-CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTC
* * * * * *
1852188 TTCTCATTATGAACTCTAC-CTGG-CATGTTGATCCATTGAGTAATGGAT
65 TTCTCATTATGAACTCTTCTCTGGAAATGCTGATCCATCGAGTGATGAAT
1852236 TCAA
1 TCAA
1852240 GTCTTTGCTA
Statistics
Matches: 295, Mismatches: 36, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
109 26 0.09
110 36 0.12
111 7 0.02
112 91 0.31
113 105 0.36
114 30 0.10
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.37
Consensus pattern (114 bp):
TCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
TCTCATTATGAACTCTTCTCTGGAAATGCTGATCCATCGAGTGATGAAT
Found at i:1852161 original size:225 final size:222
Alignment explanation
Indices: 1851790--1852207 Score: 660
Period size: 225 Copynumber: 1.9 Consensus size: 222
1851780 TGTGATAGAG
* * *
1851790 TCAAACAAAGGTTGAAAAAATTCTTCTTATTATGAACTTCTTCTTCCTCTTTAGATAAGTTCTTC
1 TCAAACAAAGGTTGAAAAAATTCTTCTCATTATGAACTTCCTCTTCCTCTTCAGATAAGTTCTTC
* *
1851855 TCATTATGAACTCTTCTCTGGAAAAGTTGATCCATCGAGTGATGAATTCAAACAAAAAGTTGAAC
66 TCATTATGAACTCTTCTCTGGAAAAGCTAATCCATCGAGTGATGAATTCAAACAAAAAGTTGAAC
1851920 AAATTCTTCTCATTATGAATTTCTTCTTCCTTATTCAGATGAGTTCTTCTCATTATGAACTCTAC
131 AAATTCTTCTCATTATGAA---CTTCTTCCTTATTCAGATGAGTTCTTCTCATTATGAACTCTAC
1851985 CCGGTAATGCTGATCCATCAAATGATGAAT
193 CCGGTAATGCTGATCCATCAAATGATGAAT
* * *
1852015 TCAAACAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCCTCTTCCTCTTCAGATGAGTTCTT
1 TCAAAC-AAAGGTTGAAAAAATTCTTCTCATTATGAACTTCCTCTTCCTCTTCAGATAAGTTCTT
* * * *
1852080 CTCATTATGAACT-TTCTCTGGCAATGCTAATCCATCGGGTGATGAATT-AAAGCAAAAGGTTGA
65 CTCATTATGAACTCTTCTCTGGAAAAGCTAATCCATCGAGTGATGAATTCAAA-CAAAAAGTTGA
*
1852143 ACAAATTCTTCTCATTATGAACTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACC
129 ACAAATTCTTCTCATTATGAACTTCTTCCTTATTCAGATGAGTTCTTCTCATTATGAACTCTACC
1852208 TGGCATGTTG
Statistics
Matches: 178, Mismatches: 13, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
222 43 0.24
224 3 0.02
225 67 0.38
226 65 0.37
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.37
Consensus pattern (222 bp):
TCAAACAAAGGTTGAAAAAATTCTTCTCATTATGAACTTCCTCTTCCTCTTCAGATAAGTTCTTC
TCATTATGAACTCTTCTCTGGAAAAGCTAATCCATCGAGTGATGAATTCAAACAAAAAGTTGAAC
AAATTCTTCTCATTATGAACTTCTTCCTTATTCAGATGAGTTCTTCTCATTATGAACTCTACCCG
GTAATGCTGATCCATCAAATGATGAAT
Found at i:1854202 original size:36 final size:36
Alignment explanation
Indices: 1854140--1854237 Score: 117
Period size: 36 Copynumber: 2.7 Consensus size: 36
1854130 TTACTTCTTG
* *
1854140 CTGAGATGAGCCTCCAAGAATG-CCCAAATATTCATA
1 CTGACATGAGCCTTCAA-AATGCCCCAAATATTCATA
* * *
1854176 TTGCCGTGAGCCTTCAAAATGCCCCAAATATTCATA
1 CTGACATGAGCCTTCAAAATGCCCCAAATATTCATA
* *
1854212 CTGACATGGGCCTTCAGAATGCCCCA
1 CTGACATGAGCCTTCAAAATGCCCCA
1854238 CATGAATCAT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
35 4 0.08
36 47 0.92
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (36 bp):
CTGACATGAGCCTTCAAAATGCCCCAAATATTCATA
Found at i:1861232 original size:16 final size:15
Alignment explanation
Indices: 1861202--1861237 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
1861192 ATACTTGAAA
*
1861202 ATAAAAAATATATAT
1 ATAAAAAATACATAT
1861217 ATAAAATAATACATAT
1 ATAAAA-AATACATAT
1861233 ATAAA
1 ATAAA
1861238 TATTATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (15 bp):
ATAAAAAATACATAT
Found at i:1861248 original size:26 final size:28
Alignment explanation
Indices: 1861207--1861261 Score: 80
Period size: 26 Copynumber: 2.0 Consensus size: 28
1861197 TGAAAATAAA
1861207 AAATATATATATAAAATAATACA-TATAT
1 AAATATATATATAAAATAATA-AGTATAT
1861235 AAATAT-TATA-AAAATAATAAGTATAT
1 AAATATATATATAAAATAATAAGTATAT
1861261 A
1 A
1861262 TAAAAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
25 1 0.04
26 15 0.58
27 4 0.15
28 6 0.23
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (28 bp):
AAATATATATATAAAATAATAAGTATAT
Found at i:1861254 original size:18 final size:19
Alignment explanation
Indices: 1861233--1861268 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1861223 TAATACATAT
1861233 ATAAATAT-TATAAAAATA
1 ATAAATATATATAAAAATA
*
1861251 ATAAGTATATATAAAAAT
1 ATAAATATATATAAAAAT
1861269 TTTGAATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
ATAAATATATATAAAAATA
Found at i:1861787 original size:17 final size:17
Alignment explanation
Indices: 1861756--1861788 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1861746 TTTTAAAAAT
1861756 ATATTATATTTTTTAAG
1 ATATTATATTTTTTAAG
1861773 ATATT-TATTTATTTAA
1 ATATTATATTT-TTTAA
1861789 AAATATCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
ATATTATATTTTTTAAG
Found at i:1861794 original size:18 final size:19
Alignment explanation
Indices: 1861741--1861794 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
1861731 AATTTATTAG
*
1861741 TATAATTTTAAAAATATAT
1 TATATTTTTAAAAATATAT
* *
1861760 TATATTTTTTAAGATAT-T
1 TATATTTTTAAAAATATAT
1861778 TAT-TTATTTAAAAATAT
1 TATATT-TTTAAAAATAT
1861795 CAGAAAAGGG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
17 2 0.07
18 13 0.45
19 14 0.48
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
TATATTTTTAAAAATATAT
Found at i:1861869 original size:16 final size:16
Alignment explanation
Indices: 1861844--1861890 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
1861834 TTATCTAAAA
1861844 ATAA-TTAAAATATTT
1 ATAATTTAAAATATTT
1861859 ATAATTTAAAATATTT
1 ATAATTTAAAATATTT
*
1861875 ATTTATTTAAATATAT
1 A-TAATTTAAA-ATAT
1861891 CAGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 4 0.14
16 12 0.43
17 8 0.29
18 4 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATAATTTAAAATATTT
Found at i:1863619 original size:23 final size:22
Alignment explanation
Indices: 1863551--1863619 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 22
1863541 AATTTTATAT
*
1863551 AATAATAATAATAGTATAAATAATA
1 AATAAAAATAATA--ATAAA-AATA
*
1863576 AATAAAAATAATAAAATAAAATA
1 AATAAAAATAATAATA-AAAATA
*
1863599 AATAAAAATGGATAATAAAAA
1 AATAAAAAT-AATAATAAAAA
1863620 ACTAGTATCT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
23 19 0.50
24 7 0.18
25 12 0.32
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (22 bp):
AATAAAAATAATAATAAAAATA
Found at i:1868961 original size:180 final size:182
Alignment explanation
Indices: 1868435--1869093 Score: 977
Period size: 182 Copynumber: 3.6 Consensus size: 182
1868425 TACGCGTACT
** * * * * *
1868435 TATTAAAGTATTAACACTTTCAACATATCCGATAGCGTTTTTCCAGTTTTGTCAT-TTCGAGACC
1 TATTAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCAGTTTTGTCATAAT-GATACC
* * *
1868499 GGTTTTGTCATATTTTTACCTTTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACAT
65 TGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACAC
* *
1868564 TTTATAGGCGCTATTACTGCTTCTCTTTTAAATTTCAAAAGTGCCGATACTTA
130 TTTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTA
** * *
1868617 TATTAAAGTATCGACACTTTCAACATATTTGGTAGCGCTTTACCAGTTTTTTCATAATGATATCT
1 TATTAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCAGTTTTGTCATAATGATACCT
1868682 GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACT
66 GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACT
*
1868747 TTATAGGCGTTATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTA
131 TTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTA
*
1868799 TATTAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATAATGATACCT
1 TATTAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCAGTTTTGTCATAATGATACCT
1868864 G-TTT-TCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACT
66 GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACT
*
1868927 TTATAGGAGCTATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTA
131 TTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTA
* * * ** * * * *
1868979 T-TTCAATGGAATCGATACTTTCAACATATTAGGTAGCGTTTTACCGGTTTTGTCATAATTA-AA
1 TATT-AA-AGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCAGTTTTGTCATAATGATAC
* *
1869042 CTGGTTTGGTCATATTTTTACCTGTTAAATTGTTATGGATCGATACATTTTT
64 CT-GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
1869094 TATATCGATA
Statistics
Matches: 437, Mismatches: 34, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
179 2 0.00
180 115 0.26
181 51 0.12
182 226 0.52
183 43 0.10
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (182 bp):
TATTAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCAGTTTTGTCATAATGATACCT
GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACT
TTATAGGCGCTATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTA
Found at i:1871382 original size:21 final size:22
Alignment explanation
Indices: 1871342--1871386 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
1871332 CCGAAACCGG
* *
1871342 TTTTATCGGTTCGGTTTGGTTT
1 TTTTAACGGTTCGGTGTGGTTT
1871364 TTTTAACGGTTCGG-GTGGTTT
1 TTTTAACGGTTCGGTGTGGTTT
1871385 TT
1 TT
1871387 CGGTTCGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.07, C:0.09, G:0.29, T:0.56
Consensus pattern (22 bp):
TTTTAACGGTTCGGTGTGGTTT
Found at i:1871410 original size:23 final size:22
Alignment explanation
Indices: 1871370--1871414 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
1871360 GTTTTTTTAA
1871370 CGGTTCGGGTGGTTTTTCGGTT
1 CGGTTCGGGTGGTTTTTCGGTT
*
1871392 CGGTTCGGTTCGGTTTTTCGGTT
1 CGGTTCGGGT-GGTTTTTCGGTT
1871415 TTTCAATGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.00, C:0.16, G:0.38, T:0.47
Consensus pattern (22 bp):
CGGTTCGGGTGGTTTTTCGGTT
Found at i:1874998 original size:43 final size:43
Alignment explanation
Indices: 1874933--1875016 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
1874923 ATTTTATTTG
*
1874933 TTTTGTAAAATCTTACTAATTGTTTTATTTATATCAAATTCTA
1 TTTTGTAAAATCTTACTAATTGTTTCATTTATATCAAATTCTA
** *
1874976 TTTTGTAAAATCTTTTTTATTGTTTCATTTATATCAAATTC
1 TTTTGTAAAATCTTACTAATTGTTTCATTTATATCAAATTC
1875017 ATATAGCGTG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.30, C:0.10, G:0.05, T:0.56
Consensus pattern (43 bp):
TTTTGTAAAATCTTACTAATTGTTTCATTTATATCAAATTCTA
Found at i:1877491 original size:28 final size:26
Alignment explanation
Indices: 1877459--1877513 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 26
1877449 ATATTTTTAA
1877459 AAATATATTAAAATAGTATATTA-ATATT
1 AAATATA-TAAAATA--ATATTACATATT
1877487 AAATATATAAAATAATATTACATATT
1 AAATATATAAAATAATATTACATATT
1877513 A
1 A
1877514 TTAGTAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
25 6 0.23
26 6 0.23
27 7 0.27
28 7 0.27
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (26 bp):
AAATATATAAAATAATATTACATATT
Found at i:1877502 original size:19 final size:20
Alignment explanation
Indices: 1877458--1877511 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 20
1877448 AATATTTTTA
1877458 AAAAT-ATATTAAA-ATAGT
1 AAAATAATATTAAATATAGT
* *
1877476 ATATTAATATTAAATATA-T
1 AAAATAATATTAAATATAGT
*
1877495 AAAATAATATTACATAT
1 AAAATAATATTAAATAT
1877512 TATTAGTAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
18 3 0.10
19 23 0.79
20 3 0.10
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (20 bp):
AAAATAATATTAAATATAGT
Found at i:1877962 original size:22 final size:22
Alignment explanation
Indices: 1877936--1877977 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
1877926 AACATTATTA
1877936 TTTCTACCGGTTTTGTTATTTT
1 TTTCTACCGGTTTTGTTATTTT
1877958 TTTCTACCGGTTTTGTTATT
1 TTTCTACCGGTTTTGTTATT
1877978 GTTGGGCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.10, C:0.14, G:0.14, T:0.62
Consensus pattern (22 bp):
TTTCTACCGGTTTTGTTATTTT
Found at i:1881512 original size:111 final size:110
Alignment explanation
Indices: 1881319--1881531 Score: 383
Period size: 111 Copynumber: 1.9 Consensus size: 110
1881309 ATTACAAAAA
* *
1881319 TTAATTCTTAATCTAATAATCATGCATTAAATAATTAACTAATTATTACTAATAATTTAAATTAA
1 TTAATTCTTAATCTAATAATCATACATTAAATAATCAACTAATTATTACTAATAATTTAAATTAA
1881384 ATTAAAACGTTAAAATGTTA-TCGTATCAGCAAAGTGTCGAGATAT
66 ATTAAAACGTTAAAATGTTACT-GTATCAGCAAAGTGTCGAGATAT
1881429 TTAATTCTTAATCTAATAATCATACATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATACATTAAAT-AATCAACTAATTATTACTAATAATTTAAATTA
1881494 AATTAAAACGTTAAAATGTTACTGTATCAGCAAAGTGT
65 AATTAAAACGTTAAAATGTTACTGTATCAGCAAAGTGT
1881532 AGGAATATAT
Statistics
Matches: 99, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
110 31 0.31
111 67 0.68
112 1 0.01
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (110 bp):
TTAATTCTTAATCTAATAATCATACATTAAATAATCAACTAATTATTACTAATAATTTAAATTAA
ATTAAAACGTTAAAATGTTACTGTATCAGCAAAGTGTCGAGATAT
Found at i:1881644 original size:17 final size:18
Alignment explanation
Indices: 1881603--1881641 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
1881593 ATTATATTAG
1881603 TAAAATA-TTAAATAAAT
1 TAAAATACTTAAATAAAT
1881620 TAAAATACTTAAATAAAT
1 TAAAATACTTAAATAAAT
1881638 TAAA
1 TAAA
1881642 TACATAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAATACTTAAATAAAT
Found at i:1881696 original size:12 final size:10
Alignment explanation
Indices: 1881683--1881723 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
1881673 CTTAAAAAGA
*
1881683 GAGAGTATTT
1 GAGAGAATTT
1881693 GAGAGAAATTT
1 GAGAG-AATTT
1881704 -AGAGAATTT
1 GAGAGAATTT
1881713 GAGAGAATTT
1 GAGAGAATTT
1881723 G
1 G
1881724 GTGTGATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 5 0.18
10 19 0.68
11 4 0.14
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.32
Consensus pattern (10 bp):
GAGAGAATTT
Found at i:1882759 original size:22 final size:22
Alignment explanation
Indices: 1882733--1882793 Score: 113
Period size: 22 Copynumber: 2.8 Consensus size: 22
1882723 CGTGCAAACC
*
1882733 GCAAATGGAAGAGACGACCGCT
1 GCAAATGAAAGAGACGACCGCT
1882755 GCAAATGAAAGAGACGACCGCT
1 GCAAATGAAAGAGACGACCGCT
1882777 GCAAATGAAAGAGACGA
1 GCAAATGAAAGAGACGA
1882794 TCGGTTAAGC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.43, C:0.20, G:0.30, T:0.08
Consensus pattern (22 bp):
GCAAATGAAAGAGACGACCGCT
Found at i:1892370 original size:21 final size:21
Alignment explanation
Indices: 1892326--1892368 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
1892316 AATACAAGAT
1892326 AATTAAAGTTACAAGTCCATA
1 AATTAAAGTTACAAGTCCATA
* *
1892347 AATTAAA-TTACGAGTCTATA
1 AATTAAAGTTACAAGTCCATA
1892367 AA
1 AA
1892369 ATATAGTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.30
Consensus pattern (21 bp):
AATTAAAGTTACAAGTCCATA
Found at i:1897176 original size:58 final size:57
Alignment explanation
Indices: 1897053--1897164 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 57
1897043 TCCCATGTGA
* * * * * *
1897053 AAATTCATACACTTAGTATGAGTTTCTTATCTTTTTGCACATAAAGTGCCTAATACGG
1 AAATTCATACAATTAGTATGAATTTCTTAACTTTTAGCACACAAAGTGCCCAATAC-G
*
1897111 AAATTCATACAATTAGTATGAATTTCTTAACATTTTAGCACACATAGTGCCCAA
1 AAATTCATACAATTAGTATGAATTTCTTAAC-TTTTAGCACACAAAGTGCCCAA
1897165 ACAATTATTC
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
58 28 0.61
59 18 0.39
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.36
Consensus pattern (57 bp):
AAATTCATACAATTAGTATGAATTTCTTAACTTTTAGCACACAAAGTGCCCAATACG
Found at i:1897227 original size:54 final size:54
Alignment explanation
Indices: 1897148--1897377 Score: 311
Period size: 54 Copynumber: 4.3 Consensus size: 54
1897138 TAACATTTTA
* * ** *
1897148 GCACACATAGTGCCCAAACAATTATTCATCCACATAGGATGAATTCCGTAAAAT
1 GCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCATAAAAT
* * *
1897202 GCACACTTAGTGTCGAAATGGTTATTCCTCCACATAGGATGAATTCCATGAAAA-
1 GCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCAT-AAAAT
* *
1897256 GAACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCATGAAAT
1 GCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCATAAAAT
* *
1897310 GTACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTACC-TGAAAT
1 GCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATT-CCATAAAAT
*
1897364 GCAAACTTAGTGCC
1 GCACACTTAGTGCC
1897378 TATTTGGTAA
Statistics
Matches: 157, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
53 3 0.02
54 148 0.94
55 6 0.04
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (54 bp):
GCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCATAAAAT
Found at i:1902062 original size:7 final size:7
Alignment explanation
Indices: 1902050--1902077 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
1902040 TATATTAAAG
1902050 ATTTATA
1 ATTTATA
1902057 ATTTATA
1 ATTTATA
1902064 ATTTATA
1 ATTTATA
1902071 ATTTATA
1 ATTTATA
1902078 TATCAAAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTTATA
Found at i:1902481 original size:17 final size:17
Alignment explanation
Indices: 1902459--1902494 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
1902449 ACATAGTTTT
1902459 CACATATACAAAATCAG
1 CACATATACAAAATCAG
1902476 CACATATACAAAATCAG
1 CACATATACAAAATCAG
1902493 CA
1 CA
1902495 GAAAGTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.53, C:0.25, G:0.06, T:0.17
Consensus pattern (17 bp):
CACATATACAAAATCAG
Found at i:1908779 original size:36 final size:36
Alignment explanation
Indices: 1908712--1908780 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 36
1908702 CCTTAAGTCC
* *** *
1908712 ATAAGGAATTACCAGCTTGATCGGTGTTGAACCTAT
1 ATAAGGAATTACCAGCTTGAACAAAGCTGAACCTAT
*
1908748 ATAAGGAATTACCAGTTTGAACAAAGCTGAACC
1 ATAAGGAATTACCAGCTTGAACAAAGCTGAACC
1908781 AACAGAGACT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 27 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.26
Consensus pattern (36 bp):
ATAAGGAATTACCAGCTTGAACAAAGCTGAACCTAT
Found at i:1908969 original size:20 final size:20
Alignment explanation
Indices: 1908940--1908977 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1908930 TAAAATACAA
1908940 TAAATCAGATAAATCATACT
1 TAAATCAGATAAATCATACT
*
1908960 TAAATTAGATAAATCATA
1 TAAATCAGATAAATCATA
1908978 GGGTAGTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.11, G:0.05, T:0.32
Consensus pattern (20 bp):
TAAATCAGATAAATCATACT
Found at i:1912392 original size:20 final size:20
Alignment explanation
Indices: 1912369--1912418 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
1912359 TGAACCTATC
1912369 AGTATCGATACTTACCTA-GG
1 AGTATCGATACTT-CCTATGG
* *
1912389 AGTATCTATACTTCCTATTG
1 AGTATCGATACTTCCTATGG
1912409 AGTATCGATA
1 AGTATCGATA
1912419 TTGATGGCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (20 bp):
AGTATCGATACTTCCTATGG
Found at i:1914983 original size:21 final size:22
Alignment explanation
Indices: 1914869--1914992 Score: 73
Period size: 21 Copynumber: 5.8 Consensus size: 22
1914859 AGTCGAGGGT
* *
1914869 TTATGTTGTCA-TTCAGGACAA
1 TTATGTGGTCACTTCGGGACAA
* * *
1914890 TTATTTGGTC-CTCCAGGACAA
1 TTATGTGGTCACTTCGGGACAA
* * *
1914911 ATATGT-GACACTTCGGTACAA
1 TTATGTGGTCACTTCGGGACAA
*
1914932 CCCTATGTGG-CACTTCGGTG-CAAA
1 --TTATGTGGTCACTTCGG-GAC-AA
*
1914956 CTATGTGGTCA-TTCGGGACAA
1 TTATGTGGTCACTTCGGGACAA
1914977 TTATGTGG-CACTTCGG
1 TTATGTGGTCACTTCGG
1914993 TGCAAATTAC
Statistics
Matches: 81, Mismatches: 12, Indels: 20
0.72 0.11 0.18
Matches are distributed among these distances:
20 4 0.05
21 44 0.54
22 14 0.17
23 16 0.20
24 3 0.04
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (22 bp):
TTATGTGGTCACTTCGGGACAA
Found at i:1921100 original size:21 final size:20
Alignment explanation
Indices: 1921044--1921102 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 20
1921034 TATTGAGAGT
*
1921044 GGTATCGATACCTTGAGGGAG
1 GGTATCGATACCTT-AAGGAG
* *
1921065 GAGTATTGGTACCTTAAGGAG
1 G-GTATCGATACCTTAAGGAG
1921086 GGTATCGATACCCTTAA
1 GGTATCGATA-CCTTAA
1921103 AACATCAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
20 7 0.23
21 13 0.42
22 11 0.35
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (20 bp):
GGTATCGATACCTTAAGGAG
Found at i:1921599 original size:21 final size:21
Alignment explanation
Indices: 1921575--1921624 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
1921565 ATGTTATGAA
1921575 AATATGAACCTT-GAACAAGTG
1 AATATGAA-CTTCGAACAAGTG
*
1921596 AATATGAACTTCGAACCAGTG
1 AATATGAACTTCGAACAAGTG
*
1921617 AATGTGAA
1 AATATGAA
1921625 TATACTCTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.24
Consensus pattern (21 bp):
AATATGAACTTCGAACAAGTG
Found at i:1924405 original size:21 final size:21
Alignment explanation
Indices: 1924331--1924406 Score: 80
Period size: 21 Copynumber: 3.6 Consensus size: 21
1924321 ACCGATATGA
* * *
1924331 TGGTATCCATACTAGATAAAC
1 TGGTATCCATACCAGATGAAT
* * * *
1924352 TGATATCCATAACGGATGAGT
1 TGGTATCCATACCAGATGAAT
*
1924373 TGGTATCCATACCAAATGAAT
1 TGGTATCCATACCAGATGAAT
1924394 TGGTATCCATACC
1 TGGTATCCATACC
1924407 TAAGATTGGG
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (21 bp):
TGGTATCCATACCAGATGAAT
Found at i:1924884 original size:17 final size:18
Alignment explanation
Indices: 1924849--1924885 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
1924839 GCTAAATTTT
1924849 GTATATGTACCCATAATG
1 GTATATGTACCCATAATG
*
1924867 GTATTTGTACCC-TAATG
1 GTATATGTACCCATAATG
1924884 GT
1 GT
1924886 GAAGTATCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (18 bp):
GTATATGTACCCATAATG
Found at i:1924988 original size:20 final size:20
Alignment explanation
Indices: 1924960--1924997 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1924950 GTTTGATACT
*
1924960 GATACTGATACTGAAGGGTC
1 GATACTGATACTAAAGGGTC
*
1924980 GATATTGATACTAAAGGG
1 GATACTGATACTAAAGGG
1924998 CTTAGTATAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (20 bp):
GATACTGATACTAAAGGGTC
Found at i:1937016 original size:25 final size:26
Alignment explanation
Indices: 1936963--1937022 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
1936953 TTTCAAGTCG
1936963 GTCGAGCTCCATTTCAAAATTTTCAA
1 GTCGAGCTCCATTTCAAAATTTTCAA
* * * *
1936989 GTCGAGCTCCCTTT-AGAGTTTTCGA
1 GTCGAGCTCCATTTCAAAATTTTCAA
1937014 GTCGAGCTC
1 GTCGAGCTC
1937023 AGCAATATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 17 0.57
26 13 0.43
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (26 bp):
GTCGAGCTCCATTTCAAAATTTTCAA
Found at i:1943723 original size:34 final size:34
Alignment explanation
Indices: 1943685--1943758 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 34
1943675 GTCTTACTTG
*
1943685 GACTCAAAAT-GATTCAGTTTTAGTGTTTCAATAA
1 GACTCAAAATACATT-AGTTTTAGTGTTTCAATAA
*
1943719 GACTC-AAATACATTGGTTTTAGTGTTTCAATAA
1 GACTCAAAATACATTAGTTTTAGTGTTTCAATAA
1943752 GACTCAA
1 GACTCAA
1943759 GTACGTTGGT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
33 27 0.75
34 9 0.25
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (34 bp):
GACTCAAAATACATTAGTTTTAGTGTTTCAATAA
Found at i:1943741 original size:33 final size:33
Alignment explanation
Indices: 1943701--1943770 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
1943691 AAATGATTCA
1943701 GTTTTAGTGTTTCAATAAGACTCAAATACATTG
1 GTTTTAGTGTTTCAATAAGACTCAAATACATTG
* *
1943734 GTTTTAGTGTTTCAATAAGACTCAAGTACGTTG
1 GTTTTAGTGTTTCAATAAGACTCAAATACATTG
1943767 GTTT
1 GTTT
1943771 ATTTTCTGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.41
Consensus pattern (33 bp):
GTTTTAGTGTTTCAATAAGACTCAAATACATTG
Found at i:1944666 original size:85 final size:82
Alignment explanation
Indices: 1944235--1944754 Score: 451
Period size: 84 Copynumber: 6.3 Consensus size: 82
1944225 CTGAATGGAA
* * * * *
1944235 TCGAACTCGAAGGTCTTTGG-CAGATAGCCCCTCTTGCCTTGAGTTATGCTGCAAATGATGGTG-
1 TCGAACTCGAAGGTCTTTGGTCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGAT-GTGC
* *
1944298 CCTTTGAGCTGAGTGGAG
65 CCTTGGAGCTGAGTGTAG
* * * * * * ***
1944316 TCAAACTAGAAATGTCTTTGTTAACAGATAACCCTTATA-ACCTTGAGTTATGCCATAAATGATG
1 TCGAACTCG-AAGGTCTTTGGT--CAGATAACCCTTCTAGA-CTTAAGTTATGCTGCAAATGATG
* * * *
1944380 TGCCCTCGAAGATGAGTGTAA
62 TGCCCTTGGAGCTGAGTGTAG
* * * * *
1944401 TCAAACTCGAGGGTCTTTGG-CAGATAGCCCTTCTTGACTTAAGCTATGCTGCAAATGATGTG-C
1 TCGAACTCGAAGGTCTTTGGTCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCC
*
1944464 CTTGGAGCTGAGCGTAG
66 CTTGGAGCTGAGTGTAG
* * * *
1944481 TCAAACTCGAAGGTCTTTGGTTGGAAGATAACCCTTCTAAACTTAAGTTATGCTGCAAATGATAT
1 TCGAACTCGAAGGTCTTTGG-T--CAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGT
*
1944546 G-CCTTGGAGCTGAGCGTAG
63 GCCCTTGGAGCTGAGTGTAG
* * * * * *
1944565 CCGAACTCGAAGGTCTTTTGGTCACAAATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGT
1 TCGAACTCGAAGGTC-TTTGGT--CAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGT
* * *
1944630 GCCCTCGAAGCTGAGTGTAA
63 GCCCTTGGAGCTGAGTGTAG
* * *
1944650 TCGAACTCGAGGGTCTTCGGTTGGCAGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGATGT
1 TCGAACTCGAAGGTCTTTGG-T--CAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGT
* *
1944715 -TCCTTGGAGCTGAGCGTAG
63 GCCCTTGGAGCTGAGTGTAG
*
1944734 TCGAACTCGAAGGCCTTTGGT
1 TCGAACTCGAAGGTCTTTGGT
1944755 GGGCACGATT
Statistics
Matches: 348, Mismatches: 77, Indels: 26
0.77 0.17 0.06
Matches are distributed among these distances:
80 32 0.09
81 39 0.11
82 10 0.03
83 1 0.00
84 148 0.43
85 118 0.34
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (82 bp):
TCGAACTCGAAGGTCTTTGGTCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATGTGCC
CTTGGAGCTGAGTGTAG
Found at i:1945084 original size:110 final size:110
Alignment explanation
Indices: 1944861--1945515 Score: 989
Period size: 110 Copynumber: 6.0 Consensus size: 110
1944851 ATCCAAATAT
* * * *
1944861 TTGTGTTGTTTCGAGGCCAATATCCTTCGCCGTGAAGTTGAAATTGACTCT--A--AAACTGGAA
1 TTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
* * * *
1944922 AGTTATTTGTTGACAGCCA-TCCGCCCCTTCGTTATTAAGTTGAGC
66 AGTTATTTGTTGACAGTCAGT-CGCCCCTTCGCTGTGAAGTTGAGC
1944967 TTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
1 TTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
*
1945032 AGTTATTTGTTGACAGTCAGTCGCCCCTTCGTTGTGAAGTTGAGC
66 AGTTATTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAGC
* * *
1945077 TTATGTTGTCTCGAGTCCAATATTCTTCGTTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
1 TTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
1945142 AGTTATTTGTTGACAGT-AGTCGCCCCTTCGCTGTGAAGTTGAGC
66 AGTTATTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAGC
* * * * * * * * *
1945186 TTGTGTTGTCTCGAGTCTAGTATCATTCGATGTGAAATTAAAATTGACTATAAATTAAACTGAAA
1 TTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
* * *
1945251 AGTTGTTTGTTGACAGGCAGCCGCCCCTTCGCTGTGAAGTTGAGC
66 AGTTATTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAGC
1945296 TTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
1 TTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
* * *
1945361 AGTTGTTTGTTGACAGTCAATCGCCCCTTCGTTGTGAAGTTGAGC
66 AGTTATTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAGC
* *
1945406 TTGTGTTGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATAAAACTGAAA
1 TTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
*
1945471 AGTTATTTGTTGACCGTCAGTCGCCCCTTCGCTGTGAAGTTGAGC
66 AGTTATTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAGC
1945516 AACCACCATC
Statistics
Matches: 499, Mismatches: 44, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
106 48 0.10
108 1 0.00
109 95 0.19
110 354 0.71
111 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (110 bp):
TTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAA
AGTTATTTGTTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAGC
Found at i:1945193 original size:219 final size:218
Alignment explanation
Indices: 1944864--1945515 Score: 979
Period size: 219 Copynumber: 3.0 Consensus size: 218
1944854 CAAATATTTG
* * * *
1944864 TGTTGTTTCGAGGCCAATATCCTTCGCCGTGAAGTTGAAATTGACTCT--A--AAACTGGAAAGT
1 TGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGT
* * *
1944925 TATTTGTTGACAGCCATCCGCCCCTTCGTTATTAAGTTGAGCTTGTGTTGTCTCGAGTCCAATAT
66 TATTTGTTGACAG-TAT-CGCCCCTTCGTTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATAT
* *
1944990 CCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTATTTGTTGACAGTCAGTCG
129 CCTTCGATGTGAAGTTGAAATTGACTCTGAATAAAACTGAAAAGTTATTTGTTGACAGTCAGTCG
*
1945055 CCCCTTCGTTGTGAAGTTGAGCTTA
194 CCCCTTCGCTGTGAAGTTGAGCTTA
* *
1945080 TGTTGTCTCGAGTCCAATATTCTTCGTTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGT
1 TGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGT
* * *
1945145 TATTTGTTGACAGTAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCTAGTATC
66 TATTTGTTGACAGTA-TCGCCCCTTCGTTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATATC
* * * * * * * * *
1945210 ATTCGATGTGAAATTAAAATTGACTATAAATTAAACTGAAAAGTTGTTTGTTGACAGGCAGCCGC
130 CTTCGATGTGAAGTTGAAATTGACTCTGAATAAAACTGAAAAGTTATTTGTTGACAGTCAGTCGC
*
1945275 CCCTTCGCTGTGAAGTTGAGCTTG
195 CCCTTCGCTGTGAAGTTGAGCTTA
1945299 TGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGT
1 TGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGT
*
1945364 TGTTTGTTGACAGTCAATCGCCCCTTCGTTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATAT
66 TATTTGTTGACAGT--ATCGCCCCTTCGTTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATAT
* *
1945429 CCTTCGTTGTGAAGTTGAAATTGACTCTGAATAAAACTGAAAAGTTATTTGTTGACCGTCAGTCG
129 CCTTCGATGTGAAGTTGAAATTGACTCTGAATAAAACTGAAAAGTTATTTGTTGACAGTCAGTCG
1945494 CCCCTTCGCTGTGAAGTTGAGC
194 CCCCTTCGCTGTGAAGTTGAGC
1945516 AACCACCATC
Statistics
Matches: 388, Mismatches: 41, Indels: 10
0.88 0.09 0.02
Matches are distributed among these distances:
216 43 0.11
218 1 0.00
219 197 0.51
220 146 0.38
221 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (218 bp):
TGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGT
TATTTGTTGACAGTATCGCCCCTTCGTTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATATCC
TTCGATGTGAAGTTGAAATTGACTCTGAATAAAACTGAAAAGTTATTTGTTGACAGTCAGTCGCC
CCTTCGCTGTGAAGTTGAGCTTA
Found at i:1949730 original size:33 final size:33
Alignment explanation
Indices: 1949685--1949755 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
1949675 AAAATGCTTC
* *
1949685 GGTTTTAATGTTTCAATATGACTCAAATACGTT
1 GGTTTTAATGTTTCAACAGGACTCAAATACGTT
*
1949718 GGTTTTAGTGTTTCAACAGGACTCAAATACGTT
1 GGTTTTAATGTTTCAACAGGACTCAAATACGTT
1949751 GGTTT
1 GGTTT
1949756 ATTTTCTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.41
Consensus pattern (33 bp):
GGTTTTAATGTTTCAACAGGACTCAAATACGTT
Found at i:1949833 original size:22 final size:21
Alignment explanation
Indices: 1949805--1949881 Score: 70
Period size: 23 Copynumber: 3.6 Consensus size: 21
1949795 GGCCTGCAAA
1949805 AATAATAAAATAAAGATATAAT
1 AATAATAAAATAAAGATAT-AT
*
1949827 AATAATAATAATAATGA-ATA-
1 AATAATAA-AATAAAGATATAT
*
1949847 AATAA-ATAAATAAATATATAT
1 AATAATA-AAATAAAGATATAT
1949868 AATATAATAAAATA
1 -A-ATAATAAAATA
1949882 TTTTTATAGA
Statistics
Matches: 45, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
19 7 0.16
20 9 0.20
21 1 0.02
22 11 0.24
23 16 0.36
24 1 0.02
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (21 bp):
AATAATAAAATAAAGATATAT
Found at i:1950361 original size:16 final size:15
Alignment explanation
Indices: 1950326--1950359 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
1950316 AGTAATTTTC
*
1950326 TTTTGATAAAGTCTT
1 TTTTAATAAAGTCTT
1950341 TTTTAATAAAGTCTT
1 TTTTAATAAAGTCTT
1950356 TTTT
1 TTTT
1950360 TACCTAACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.26, C:0.06, G:0.09, T:0.59
Consensus pattern (15 bp):
TTTTAATAAAGTCTT
Found at i:1952367 original size:28 final size:28
Alignment explanation
Indices: 1952323--1952377 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
1952313 ATAGAGTTTT
**
1952323 TTTTTAAAAATATAATATTATTTTTAAG
1 TTTTTAAAAATATAATAAAATTTTTAAG
*
1952351 TTTTT-AAAATGTAAATAAAATTTTTAA
1 TTTTTAAAAATAT-AATAAAATTTTTAA
1952378 AATTTTATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 6 0.26
28 17 0.74
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (28 bp):
TTTTTAAAAATATAATAAAATTTTTAAG
Found at i:1952879 original size:21 final size:23
Alignment explanation
Indices: 1952855--1952902 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 23
1952845 TAATAAAAGA
1952855 TATATATTTAT-TTTTA-AA-ATT
1 TATATATTT-TCTTTTATAATATT
*
1952876 TATATGTTTTCTTTTATAATATT
1 TATATATTTTCTTTTATAATATT
1952899 TATA
1 TATA
1952903 CAATATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 1 0.04
21 13 0.57
22 2 0.09
23 7 0.30
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (23 bp):
TATATATTTTCTTTTATAATATT
Found at i:1953570 original size:22 final size:22
Alignment explanation
Indices: 1953542--1953585 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
1953532 GGCTTAGGAT
*
1953542 TTATTTTAGAGGAAAAAAGAAA
1 TTATTTTAAAGGAAAAAAGAAA
* *
1953564 TTATTTTAAATGAAAAATGAAA
1 TTATTTTAAAGGAAAAAAGAAA
1953586 AAAAAGAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.55, C:0.00, G:0.14, T:0.32
Consensus pattern (22 bp):
TTATTTTAAAGGAAAAAAGAAA
Found at i:1955870 original size:2 final size:2
Alignment explanation
Indices: 1955863--1955909 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
1955853 AAATAAAATT
1955863 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1955905 TA TA T
1 TA TA T
1955910 TATGCAGAGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1957674 original size:20 final size:21
Alignment explanation
Indices: 1957649--1957689 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
1957639 TTGTTTGGCT
1957649 CTGAAT-AGAACCATTCAGCG
1 CTGAATCAGAACCATTCAGCG
*
1957669 CTGAATGCTGAACCATTCAGC
1 CTGAAT-CAGAACCATTCAGC
1957690 ATTCAGCGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
22 12 0.67
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.22
Consensus pattern (21 bp):
CTGAATCAGAACCATTCAGCG
Found at i:1957840 original size:15 final size:15
Alignment explanation
Indices: 1957820--1957848 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1957810 TGTCACATTC
1957820 AGAGCTAATTCATAT
1 AGAGCTAATTCATAT
1957835 AGAGCTAATTCATA
1 AGAGCTAATTCATA
1957849 CAGTCAGCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (15 bp):
AGAGCTAATTCATAT
Found at i:1958401 original size:19 final size:19
Alignment explanation
Indices: 1958379--1958421 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
1958369 TTAATTTACG
*
1958379 ATTATGATTATAA-ATATTT
1 ATTATAATT-TAAGATATTT
1958398 ATTATAATTTAAGATATTT
1 ATTATAATTTAAGATATTT
*
1958417 CTTAT
1 ATTAT
1958422 TTTGAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (19 bp):
ATTATAATTTAAGATATTT
Found at i:1959586 original size:15 final size:17
Alignment explanation
Indices: 1959568--1959599 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
1959558 ACGTGTCTCG
1959568 ATTT-ATTTTTG-AAAA
1 ATTTGATTTTTGCAAAA
1959583 ATTTGATTTTTGCAAAA
1 ATTTGATTTTTGCAAAA
1959600 GAAATGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 7 0.47
17 4 0.27
ACGTcount: A:0.38, C:0.03, G:0.09, T:0.50
Consensus pattern (17 bp):
ATTTGATTTTTGCAAAA
Found at i:1962597 original size:162 final size:162
Alignment explanation
Indices: 1962301--1962739 Score: 523
Period size: 162 Copynumber: 2.7 Consensus size: 162
1962291 TGATGGATTT
** * * ***
1962301 GAGCAAAAGGCCGAACAAGTTCTTCTCATTATGAAC-TTCT-T-TTTGTTCAAATGAGTTCTTCT
1 GAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTTCTCTCCTTATTTGGATGAGTTCTTCT
* * *
1962363 CATTATGAACCCTTCAATTGGAAATGATGATCCACCTGCTTCTGTGATGGATTTGGTCAAAATGC
66 CATTATGAACTC-TCAATTGGAAATGATGATCCACCTCCTTTTGTGATGGATTTGGTCAAAATGC
*
1962428 TGATGTTGATTTATCTTC-TTCTGCGATAGAGTC
130 TGATGTTGATATATC-TCATTCTGCGATAGAGTC
* * *
1962461 GAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTTCTCTCCGTCTTTGGATGGGTTCTTCT
1 GAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTTCTCTCCTTATTTGGATGAGTTCTTCT
* * * *
1962526 CATTATGAACTCTCCATTGAAAATGATGATCCACCCCCTTTTGTGATGGATTTGAG-CAAAATGT
66 CATTATGAACTCTCAATTGGAAATGATGATCCACCTCCTTTTGTGATGGATTTG-GTCAAAATGC
*
1962590 TGATGTTGATATATCTCATTTTGCGATAGAGTC
130 TGATGTTGATATATCTCATTCTGCGATAGAGTC
* * *
1962623 GAGCAAAAGGTTGAACAAGTTATTCTCATTATGAA-TTTCTTCTCTCTTATGTGGATGATTTCTT
1 GAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTTC-TCTC-CTTATTTGGATGAGTTCTT
* ** * * *
1962687 -TACGTTATGAACTCTCTTTTGGAAATGTTGATCAACCTCATTTTGTGATGGAT
64 CT-CATTATGAACTCTCAATTGGAAATGATGATCCACCTCCTTTTGTGATGGAT
1962740 CTGAATCTCT
Statistics
Matches: 239, Mismatches: 32, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
160 34 0.14
161 10 0.04
162 112 0.47
163 83 0.35
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.38
Consensus pattern (162 bp):
GAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTTCTCTCCTTATTTGGATGAGTTCTTCT
CATTATGAACTCTCAATTGGAAATGATGATCCACCTCCTTTTGTGATGGATTTGGTCAAAATGCT
GATGTTGATATATCTCATTCTGCGATAGAGTC
Found at i:1963184 original size:103 final size:102
Alignment explanation
Indices: 1962992--1963251 Score: 337
Period size: 103 Copynumber: 2.5 Consensus size: 102
1962982 TCTATCTTAG
*
1962992 GTGAGATAAAATTTGGTTTCGAGTG-AACAATTTCAAATTTTGTGTTCCAAGGG-AAACTATCTC
1 GTGAGAT-AAATTTGGTTTCGAGTGAAACAATTTCAAATTTTGTGTTTCAAGGGAAAACTATCTC
*
1963055 AAGCAAGACGAAATTGATTTTAAGAAAAACAATCTCAA
65 AAGCAAGACGAAATTGATTTTAAGAAAAACAATATCAA
* * *
1963093 GTGAGATCAATTTGGTTTC-AGGTGAAACAAATTCCAAATTTTGTGTTTCAAGGGAAAACTGTCT
1 GTGAGATAAATTTGGTTTCGA-GTGAAAC-AATTTCAAATTTTGTGTTTCAAGGGAAAACTATCT
* * * * *
1963157 CAAGCGAGATGAAATTGGTTTTGAGAAAAATAATATCAA
64 CAAGCAAGACGAAATTGATTTTAAGAAAAACAATATCAA
* * * *
1963196 GTAAGATAAATTTTGTTTCGAGTGAAACAATTTCAAAATTTATGTTTCAAAGGGAA
1 GTGAGATAAATTTGGTTTCGAGTGAAACAATTTCAAATTTTGTGTTTC-AAGGGAA
1963252 CTTGTTTCAA
Statistics
Matches: 137, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
99 1 0.01
100 14 0.10
101 10 0.07
102 40 0.29
103 71 0.52
104 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (102 bp):
GTGAGATAAATTTGGTTTCGAGTGAAACAATTTCAAATTTTGTGTTTCAAGGGAAAACTATCTCA
AGCAAGACGAAATTGATTTTAAGAAAAACAATATCAA
Found at i:1963622 original size:101 final size:100
Alignment explanation
Indices: 1963317--1963645 Score: 419
Period size: 101 Copynumber: 3.2 Consensus size: 100
1963307 AAGAGAAAAT
* * * * * *
1963317 ATCTTAAGTGAGATAAAAATTTGATTTAAGTGAAGCAATTTCAAAATTTT-TGTTTCAAGGGAAA
1 ATCTCAAGTGAGAT-AAATTTTG-TTTCAGTGAAACAA-TTCCAAATTTTGTGTTTCAAAGGAAA
*
1963381 CTGTCTCTAGCGAGACGAAATTGATTTTAAGAAAAACA
63 CTGTCTCAAGCGAGACGAAATTGATTTTAAGAAAAACA
* *
1963419 ATCTCAAGTGAGATAAATTTGGTTTCAGGTGAAACAAATTCCAAATTTTGTGTTT-TAAGCGAAA
1 ATCTCAAGTGAGATAAATTTTGTTTCA-GTGAAAC-AATTCCAAATTTTGTGTTTCAAAG-G-AA
* * * *
1963483 ACTGTCTCAAGCGAAATGAAATTGGTTTTGAGAAAAACA
62 ACTGTCTCAAGCGAGACGAAATTGATTTTAAGAAAAACA
* * *
1963522 ATCTGAAGTAAGATCAATTTTGTTTCGAGTGAAACAATTCCAAATTTTGTGTTTCAAAGGAAACT
1 ATCTCAAGTGAGATAAATTTTGTTTC-AGTGAAACAATTCCAAATTTTGTGTTTCAAAGGAAACT
1963587 GTCTCAAGCGAGACGAAATTGATTTTAAGAAAAACA
65 GTCTCAAGCGAGACGAAATTGATTTTAAGAAAAACA
*
1963623 ATCTCAAGTGATATAAATTTTGT
1 ATCTCAAGTGAGATAAATTTTGT
1963646 CGTATCAAAT
Statistics
Matches: 194, Mismatches: 26, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
100 4 0.02
101 80 0.41
102 41 0.21
103 68 0.35
104 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (100 bp):
ATCTCAAGTGAGATAAATTTTGTTTCAGTGAAACAATTCCAAATTTTGTGTTTCAAAGGAAACTG
TCTCAAGCGAGACGAAATTGATTTTAAGAAAAACA
Found at i:1965690 original size:7 final size:7
Alignment explanation
Indices: 1965680--1965809 Score: 67
Period size: 7 Copynumber: 18.7 Consensus size: 7
1965670 TTATTTTCTC
1965680 TTTTCCTT
1 TTTTCC-T
1965688 TTTTCCT
1 TTTTCCT
1965695 TTTT-CT
1 TTTTCCT
*
1965701 GCTTTTCTT
1 --TTTTCCT
1965710 CTTTTCCAT
1 -TTTTCC-T
1965719 TCTTT--T
1 T-TTTCCT
*
1965725 TTTTTCT
1 TTTTCCT
1965732 TTTT--T
1 TTTTCCT
1965737 TTTT-CT
1 TTTTCCT
*
1965743 TTTTTCT
1 TTTTCCT
1965750 TTTT-CT
1 TTTTCCT
*
1965756 TTTTCAT
1 TTTTCCT
*
1965763 TTTTCTT
1 TTTTCCT
*
1965770 TTTTCAT
1 TTTTCCT
*
1965777 TTTTCAT
1 TTTTCCT
*
1965784 TTTTCAT
1 TTTTCCT
*
1965791 TTTTCAT
1 TTTTCCT
*
1965798 TTTTCAT
1 TTTTCCT
1965805 TTTTC
1 TTTTC
1965810 TTTCATTTTT
Statistics
Matches: 107, Mismatches: 5, Indels: 21
0.80 0.04 0.16
Matches are distributed among these distances:
5 8 0.07
6 15 0.14
7 62 0.58
8 17 0.16
9 5 0.05
ACGTcount: A:0.05, C:0.18, G:0.01, T:0.76
Consensus pattern (7 bp):
TTTTCCT
Found at i:1965707 original size:23 final size:22
Alignment explanation
Indices: 1965673--1965811 Score: 88
Period size: 21 Copynumber: 6.6 Consensus size: 22
1965663 TTCAATTTTA
1965673 TTTTCTCTTTTCCTT-TTTTCCT
1 TTTTCTCTTTT-CTTCTTTTCCT
1965695 TTTTCTGCTTTTCTTCTTTTCCAT
1 TTTTCT-CTTTTCTTCTTTTCC-T
*
1965719 TCTT-T-TTTT-TTCTTTT--T
1 TTTTCTCTTTTCTTCTTTTCCT
*
1965736 TTTT-TCTTTT-TTCTTTTTCT
1 TTTTCTCTTTTCTTCTTTTCCT
*
1965756 TTTTCAT-TTTTCTT-TTTTCAT
1 TTTTC-TCTTTTCTTCTTTTCCT
* *
1965777 TTTTCAT-TTTTCAT-TTTTCAT
1 TTTTC-TCTTTTCTTCTTTTCCT
1965798 TTTTCAT-TTTTCTT
1 TTTTC-TCTTTTCTT
1965812 TCATTTTTAT
Statistics
Matches: 102, Mismatches: 6, Indels: 19
0.80 0.05 0.15
Matches are distributed among these distances:
17 5 0.05
18 11 0.11
20 12 0.12
21 46 0.45
22 12 0.12
23 12 0.12
24 4 0.04
ACGTcount: A:0.05, C:0.18, G:0.01, T:0.76
Consensus pattern (22 bp):
TTTTCTCTTTTCTTCTTTTCCT
Found at i:1965825 original size:7 final size:7
Alignment explanation
Indices: 1965725--1965825 Score: 121
Period size: 7 Copynumber: 15.7 Consensus size: 7
1965715 CCATTCTTTT
1965725 TTTTTC-
1 TTTTTCA
1965731 TTTTT--
1 TTTTTCA
*
1965736 TTTTTCT
1 TTTTTCA
1965743 TTTTTC-
1 TTTTTCA
1965749 TTTTTC-
1 TTTTTCA
1965755 TTTTTCA
1 TTTTTCA
*
1965762 TTTTTCT
1 TTTTTCA
1965769 TTTTTCA
1 TTTTTCA
1965776 TTTTTCA
1 TTTTTCA
1965783 TTTTTCA
1 TTTTTCA
1965790 TTTTTCA
1 TTTTTCA
1965797 TTTTTCA
1 TTTTTCA
1965804 TTTTTC-
1 TTTTTCA
1965810 --TTTCA
1 TTTTTCA
1965815 TTTTT-A
1 TTTTTCA
1965821 TTTTT
1 TTTTT
1965826 ATTATTTTTC
Statistics
Matches: 87, Mismatches: 2, Indels: 12
0.86 0.02 0.12
Matches are distributed among these distances:
4 4 0.05
5 5 0.06
6 23 0.26
7 55 0.63
ACGTcount: A:0.08, C:0.13, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTTTCA
Found at i:1967471 original size:23 final size:25
Alignment explanation
Indices: 1967433--1967481 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
1967423 TGTATGGAAT
* *
1967433 AAATGAAATAATAAAA-AATGTTAA
1 AAATGAAATAAAAAAAGAATGATAA
1967457 AAATG-AATAAAAAAAGAATGATAA
1 AAATGAAATAAAAAAAGAATGATAA
1967481 A
1 A
1967482 GAATATGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.20
Consensus pattern (25 bp):
AAATGAAATAAAAAAAGAATGATAA
Found at i:1969944 original size:23 final size:23
Alignment explanation
Indices: 1969865--1969946 Score: 78
Period size: 23 Copynumber: 3.7 Consensus size: 23
1969855 GTGCCACATA
* * *
1969865 AAATGTCCCGAAAGACTACATAG
1 AAATGTCCCGAAGGACCACGTAG
* *
1969888 --ATGTCCCGAAGGACCTCGTAT
1 AAATGTCCCGAAGGACCACGTAG
*
1969909 AAATATCCCGAAGGACCACGTAG
1 AAATGTCCCGAAGGACCACGTAG
* *
1969932 AATTGTCCTGAAGGA
1 AAATGTCCCGAAGGA
1969947 ATGCGTAGAA
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
21 16 0.35
23 30 0.65
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (23 bp):
AAATGTCCCGAAGGACCACGTAG
Found at i:1970216 original size:44 final size:44
Alignment explanation
Indices: 1970071--1970228 Score: 131
Period size: 45 Copynumber: 3.5 Consensus size: 44
1970061 ATCACATAGA
* * * * *
1970071 CATATAATCACATAATTTCTTGA-CACGTAGCTTATATCACATGTT
1 CATATAATCACAT-ATGTCAT-ATCACATAGCATAAATCACATGTT
* * * *
1970116 CATATAATCACTTATGTCCATATCACATAGCTTATATCATAT-TCT
1 CATATAATCACATATGT-CATATCACATAGCATAAATCACATGT-T
* * * * *
1970161 CATGTAATCACATATGTCATTTCTCATGGCATAAATCACATGTG
1 CATATAATCACATATGTCATATCACATAGCATAAATCACATGTT
*
1970205 CATATAATCACATATATCATATCA
1 CATATAATCACATATGTCATATCA
1970229 TATAACTTAT
Statistics
Matches: 91, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
44 43 0.47
45 48 0.53
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.37
Consensus pattern (44 bp):
CATATAATCACATATGTCATATCACATAGCATAAATCACATGTT
Found at i:1973887 original size:41 final size:41
Alignment explanation
Indices: 1973842--1974034 Score: 359
Period size: 41 Copynumber: 4.7 Consensus size: 41
1973832 ATTCGCGTTG
*
1973842 CATTTCGCGTTGCGATAGTTGGAAATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1973883 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
*
1973924 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGAGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
*
1973965 CATTTCGCGTTGCTATAGTTGAAAATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1974006 CATTTCGCGTTGCGATAGTTGAAAATCGC
1 CATTTCGCGTTGCGATAGTTGAAAATCGC
1974035 ATTCGCATTG
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 147 1.00
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.36
Consensus pattern (41 bp):
CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
Found at i:1973892 original size:20 final size:20
Alignment explanation
Indices: 1973867--1974021 Score: 130
Period size: 20 Copynumber: 7.6 Consensus size: 20
1973857 TAGTTGGAAA
1973867 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
* ** **
1973887 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGAT-TTTCCATT
1973908 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
* ** **
1973928 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGAT-TTTCCATT
*
1973949 TCGCGTTGAGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
* * ** **
1973969 TCGCGTTGCTATAGTTGAAAA
1 TCGCGTTGCGAT-TTTCCATT
1973990 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
1974010 TCGCGTTGCGAT
1 TCGCGTTGCGAT
1974022 AGTTGAAAAT
Statistics
Matches: 98, Mismatches: 34, Indels: 6
0.71 0.25 0.04
Matches are distributed among these distances:
20 55 0.56
21 43 0.44
ACGTcount: A:0.18, C:0.20, G:0.24, T:0.38
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCATT
Found at i:1974108 original size:22 final size:22
Alignment explanation
Indices: 1974079--1974135 Score: 96
Period size: 22 Copynumber: 2.6 Consensus size: 22
1974069 TTTTCCAAAT
1974079 TCGTTGCGATAGTCTACAGTTG
1 TCGTTGCGATAGTCTACAGTTG
* *
1974101 TTGTTGCGAAAGTCTACAGTTG
1 TCGTTGCGATAGTCTACAGTTG
1974123 TCGTTGCGATAGT
1 TCGTTGCGATAGT
1974136 TAAAAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.19, C:0.16, G:0.28, T:0.37
Consensus pattern (22 bp):
TCGTTGCGATAGTCTACAGTTG
Found at i:1974689 original size:6 final size:6
Alignment explanation
Indices: 1974673--1974710 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
1974663 TCTCGTCTCG
1974673 GGTCG- GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
1974711 AATACGTGTC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.00, C:0.16, G:0.53, T:0.32
Consensus pattern (6 bp):
GGTCGT
Found at i:1974881 original size:20 final size:20
Alignment explanation
Indices: 1974856--1974951 Score: 93
Period size: 20 Copynumber: 4.8 Consensus size: 20
1974846 TCGCAACTGG
1974856 AAAATCGCAACGCGAAATGA
1 AAAATCGCAACGCGAAATGA
** *
1974876 AAAATCGCAACGCGATTTTCA
1 AAAATCGCAACGCGA-AATGA
** * * *
1974897 ACTATCGCAACACGAACTGG
1 AAAATCGCAACGCGAAATGA
* *
1974917 AAAATCTCAACGCGAAATGG
1 AAAATCGCAACGCGAAATGA
1974937 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
1974952 TTTTCGCAAC
Statistics
Matches: 59, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
20 45 0.76
21 14 0.24
ACGTcount: A:0.43, C:0.24, G:0.19, T:0.15
Consensus pattern (20 bp):
AAAATCGCAACGCGAAATGA
Found at i:1974979 original size:19 final size:19
Alignment explanation
Indices: 1974955--1975023 Score: 57
Period size: 19 Copynumber: 3.5 Consensus size: 19
1974945 AACGCGATTT
1974955 TCGCAACGAATTTGGAAAA
1 TCGCAACGAATTTGGAAAA
* * **
1974974 TCGCAACGACAACTGTAGACTA
1 TCGCAACG--AA-TTTGGAAAA
* *
1974996 TCTCAATGAATTTGGAAAA
1 TCGCAACGAATTTGGAAAA
1975015 TCGCAACGA
1 TCGCAACGA
1975024 CAACTGTAGA
Statistics
Matches: 35, Mismatches: 12, Indels: 6
0.66 0.23 0.11
Matches are distributed among these distances:
19 20 0.57
20 2 0.06
21 2 0.06
22 11 0.31
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (19 bp):
TCGCAACGAATTTGGAAAA
Found at i:1975019 original size:41 final size:42
Alignment explanation
Indices: 1974955--1975064 Score: 163
Period size: 41 Copynumber: 2.7 Consensus size: 42
1974945 AACGCGATTT
1974955 TCGCAA-CGAATTTGGAAAATCGCAACGACAACTGTAGACTA
1 TCGCAACCGAATTTGGAAAATCGCAACGACAACTGTAGACTA
* *
1974996 TCTCAA-TGAATTTGGAAAATCGCAACGACAACTGTAGACTA
1 TCGCAACCGAATTTGGAAAATCGCAACGACAACTGTAGACTA
*
1975037 TCGCAACGCGAA-CTGGAAAATCGCAACG
1 TCGCAAC-CGAATTTGGAAAATCGCAACG
1975065 CGAAATGGAA
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 44 0.71
42 15 0.24
43 3 0.05
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (42 bp):
TCGCAACCGAATTTGGAAAATCGCAACGACAACTGTAGACTA
Found at i:1975042 original size:22 final size:22
Alignment explanation
Indices: 1974973--1975044 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 22
1974963 AATTTGGAAA
1974973 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
* * * * **
1974995 ATCTCAATG--AA-TTTGGAAA
1 ATCGCAACGACAACTGTAGACT
1975014 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
1975036 ATCGCAACG
1 ATCGCAACG
1975045 CGAACTGGAA
Statistics
Matches: 35, Mismatches: 12, Indels: 6
0.66 0.23 0.11
Matches are distributed among these distances:
19 11 0.31
20 2 0.06
21 2 0.06
22 20 0.57
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.21
Consensus pattern (22 bp):
ATCGCAACGACAACTGTAGACT
Found at i:1975061 original size:20 final size:20
Alignment explanation
Indices: 1975008--1975087 Score: 99
Period size: 20 Copynumber: 3.9 Consensus size: 20
1974998 TCAATGAATT
1975008 TGGAAAATCGCAACGAC-AAC
1 TGGAAAATCGCAACG-CGAAC
**
1975028 TGTAGACTATCGCAACGCGAAC
1 TG--GAAAATCGCAACGCGAAC
*
1975050 TGGAAAATCGCAACGCGAAA
1 TGGAAAATCGCAACGCGAAC
1975070 TGGAAAATCGCAACGCGA
1 TGGAAAATCGCAACGCGA
1975088 TTTTCAACTA
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
20 35 0.67
21 1 0.02
22 16 0.31
ACGTcount: A:0.40, C:0.24, G:0.24, T:0.12
Consensus pattern (20 bp):
TGGAAAATCGCAACGCGAAC
Found at i:1975102 original size:21 final size:21
Alignment explanation
Indices: 1975076--1975129 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
1975066 GAAATGGAAA
1975076 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
*
1975097 ATCGCAACGCGATTTTCAATT
1 ATCGCAACGCGATTTTCAACT
1975118 ATCGCAACGCGA
1 ATCGCAACGCGA
1975130 ATTTACGATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (21 bp):
ATCGCAACGCGATTTTCAACT
Found at i:1977997 original size:2 final size:2
Alignment explanation
Indices: 1977990--1978042 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
1977980 ACCCTAATTC
1977990 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1978032 AT AT AT AT AT A
1 AT AT AT AT AT A
1978043 ATAAATCTAG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1984474 original size:10 final size:10
Alignment explanation
Indices: 1984459--1984518 Score: 50
Period size: 10 Copynumber: 5.8 Consensus size: 10
1984449 ATTTAATGGA
1984459 CGGTCAACGT
1 CGGTCAACGT
*
1984469 CGGTCAAAGTT
1 CGGTCAACG-T
1984480 CTGGTCAACGGT
1 C-GGTCAAC-GT
*
1984492 -GGTCAACGA
1 CGGTCAACGT
* *
1984501 CAGTCAACGA
1 CGGTCAACGT
1984511 CGGTCAAC
1 CGGTCAAC
1984519 AGTCAATGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
9 1 0.02
10 30 0.73
11 2 0.05
12 7 0.17
13 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.28, T:0.18
Consensus pattern (10 bp):
CGGTCAACGT
Found at i:1993667 original size:102 final size:102
Alignment explanation
Indices: 1993450--1993675 Score: 240
Period size: 102 Copynumber: 2.2 Consensus size: 102
1993440 TCTGAAGTTC
* * * * * * * *
1993450 AGGTCGAACAAGTTGGCAGATGAATGATTTCCCATTGAATTTGAAGGCATACTATCATATGGGTT
1 AGGTCGAAAAAGTTGGAAGATGAATGATTTCCCATAGAACTTAAAGGAATAATATCATATGAGTT
*
1993515 TTGAACAGACTGTTATGTCGAAGATATCTCGATATTA
66 TTGAACAGACTGTTATGTCGAAGATATCTCCATATTA
** * * *
1993552 AGGTTTAAAAAGTTAGAAGATGAATG-TCTTCCCCTAGAACTTAAAGGAATAATGTCATATGAGT
1 AGGTCGAAAAAGTTGGAAGATGAATGAT-TTCCCATAGAACTTAAAGGAATAATATCATATGAGT
* * * * *
1993616 TTTGAACAGACTGTTGTGTCGATG-TCATTTCCATGTTG
65 TTTGAACAGACTGTTATGTCGAAGAT-ATCTCCATATTA
*
1993654 AGGTCGAAGAAGTTGGAAGATG
1 AGGTCGAAAAAGTTGGAAGATG
1993676 TATGCCTTTC
Statistics
Matches: 99, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
101 2 0.02
102 97 0.98
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (102 bp):
AGGTCGAAAAAGTTGGAAGATGAATGATTTCCCATAGAACTTAAAGGAATAATATCATATGAGTT
TTGAACAGACTGTTATGTCGAAGATATCTCCATATTA
Found at i:1994086 original size:37 final size:36
Alignment explanation
Indices: 1994032--1994117 Score: 145
Period size: 37 Copynumber: 2.4 Consensus size: 36
1994022 GTTCAGTAGG
*
1994032 AAACAACAAACCATACACATTACATTAAGGAGATAAA
1 AAACAACAAACCTTACACATTACATTAAGGAGAT-AA
*
1994069 AAATAACAAACCTTACACATTACATTAAGGAGATAA
1 AAACAACAAACCTTACACATTACATTAAGGAGATAA
1994105 AAACAACAAACCT
1 AAACAACAAACCT
1994118 CTCACAAACC
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
36 14 0.30
37 32 0.70
ACGTcount: A:0.56, C:0.20, G:0.07, T:0.17
Consensus pattern (36 bp):
AAACAACAAACCTTACACATTACATTAAGGAGATAA
Found at i:1998742 original size:16 final size:17
Alignment explanation
Indices: 1998717--1998750 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
1998707 CTGAGGTGTC
1998717 ACATTGACTTTT-CAAA
1 ACATTGACTTTTACAAA
*
1998733 ACATTTACTTTTACAAA
1 ACATTGACTTTTACAAA
1998750 A
1 A
1998751 GAATGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.41, C:0.18, G:0.03, T:0.38
Consensus pattern (17 bp):
ACATTGACTTTTACAAA
Found at i:1999435 original size:23 final size:23
Alignment explanation
Indices: 1999397--1999467 Score: 74
Period size: 23 Copynumber: 3.1 Consensus size: 23
1999387 CCACTAGGGG
* *
1999397 CACATAGAATTTGTCCCGAATGAC
1 CACATAGAA-ATGTCCCGAAGGAC
*
1999421 CACTTAGAAATGTCCCGAAGGAC
1 CACATAGAAATGTCCCGAAGGAC
* *
1999444 CACATAG--ATGTCCTGAAGAAC
1 CACATAGAAATGTCCCGAAGGAC
1999465 CAC
1 CAC
1999468 TCCTTCATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
21 15 0.37
23 18 0.44
24 8 0.20
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (23 bp):
CACATAGAAATGTCCCGAAGGAC
Found at i:2003510 original size:21 final size:20
Alignment explanation
Indices: 2003445--2003518 Score: 58
Period size: 20 Copynumber: 3.6 Consensus size: 20
2003435 TTTGTTCAGC
2003445 AAAAGATCGATCCATTTTCA
1 AAAAGATCGATCCATTTTCA
* * * ****
2003465 AAAGGATTGATCCCTCGGGA
1 AAAAGATCGATCCATTTTCA
*
2003485 GAAAGGATCGATCCATTTTCA
1 -AAAAGATCGATCCATTTTCA
*
2003506 AAAAGATCTATCC
1 AAAAGATCGATCC
2003519 CTCGAAAGAG
Statistics
Matches: 38, Mismatches: 15, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
20 24 0.63
21 14 0.37
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (20 bp):
AAAAGATCGATCCATTTTCA
Done.