Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001129.1 Hibiscus syriacus cultivar Beakdansim tig00002237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21326069
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 32 of 89
Found at i:6858144 original size:22 final size:22
Alignment explanation
Indices: 6858118--6858170 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
6858108 TGTATGAACA
6858118 GTATCGATACCCTATG-GAAGAG
1 GTATCGATACCCTATGTGAAG-G
*
6858140 GTATCGATA-CCTATGTGGAGG
1 GTATCGATACCCTATGTGAAGG
6858161 GTATCGATAC
1 GTATCGATAC
6858171 AGGGAGAACA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 16 0.57
22 12 0.43
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (22 bp):
GTATCGATACCCTATGTGAAGG
Found at i:6859178 original size:18 final size:18
Alignment explanation
Indices: 6859155--6859191 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
6859145 GAGGGTTCTA
6859155 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
*
6859173 AGTGGTCTTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
6859191 A
1 A
6859192 TGTGTTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.19, C:0.19, G:0.32, T:0.30
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:6859549 original size:23 final size:24
Alignment explanation
Indices: 6859522--6859576 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
6859512 ATTACATATG
*
6859522 TGGTCCTTCAGAAT-AATTCTATA
1 TGGTCCTTCAGAATAAATTCTACA
* * * *
6859545 TGGTCATTCGGGATAAATTCTACG
1 TGGTCCTTCAGAATAAATTCTACA
6859569 TGGTCCTT
1 TGGTCCTT
6859577 TGGGAAAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
23 11 0.44
24 14 0.56
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (24 bp):
TGGTCCTTCAGAATAAATTCTACA
Found at i:6859572 original size:24 final size:24
Alignment explanation
Indices: 6859536--6859594 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
6859526 CCTTCAGAAT
** *
6859536 AATTCTATATGGTCATTCGGGATA
1 AATTCTACGTGGTCATTCGGGAAA
* *
6859560 AATTCTACGTGGTCCTTTGGGAAA
1 AATTCTACGTGGTCATTCGGGAAA
6859584 AATTCTACGTG
1 AATTCTACGTG
6859595 ACAATTCGGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (24 bp):
AATTCTACGTGGTCATTCGGGAAA
Found at i:6870747 original size:24 final size:25
Alignment explanation
Indices: 6870700--6870817 Score: 71
Period size: 28 Copynumber: 4.6 Consensus size: 25
6870690 AAGACACTAT
6870700 ATATATATATATATAATAGGAAAACA
1 ATATATATATATATAATA-GAAAACA
*
6870726 ATATATATAGTATAT-ATAAAAAACA
1 ATATATATA-TATATAATAGAAAACA
* * * * * *
6870751 A-AAATA-AAAAATAGTAGTAAATA
1 ATATATATATATATAATAGAAAACA
* * *
6870774 TATATATATATATATATATATATATATA
1 -ATATATATATATATA-ATAGA-AAACA
6870802 TATATATATATATATA
1 -ATATATATATATATA
6870818 TATATAATTA
Statistics
Matches: 70, Mismatches: 15, Indels: 12
0.72 0.15 0.12
Matches are distributed among these distances:
22 3 0.04
23 7 0.10
24 5 0.07
25 11 0.16
26 17 0.24
27 7 0.10
28 20 0.29
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (25 bp):
ATATATATATATATAATAGAAAACA
Found at i:6870776 original size:2 final size:2
Alignment explanation
Indices: 6870771--6870823 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
6870761 ATAGTAGTAA
6870771 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6870813 AT AT AT AT AT A
1 AT AT AT AT AT A
6870824 ATTACATACA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6875585 original size:17 final size:17
Alignment explanation
Indices: 6875559--6875617 Score: 93
Period size: 17 Copynumber: 3.5 Consensus size: 17
6875549 ATTGAAGCCC
*
6875559 TCTT-TTTTTTTTTAAA
1 TCTTCTTTTTTTTGAAA
6875575 TCTTCTTTTTTTTGAAA
1 TCTTCTTTTTTTTGAAA
6875592 TCTTCTTTCTTTTTGAAA
1 TCTTCTTT-TTTTTGAAA
6875610 TCTTCTTT
1 TCTTCTTT
6875618 CTTTGTTGGA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
16 4 0.10
17 19 0.47
18 17 0.43
ACGTcount: A:0.15, C:0.14, G:0.03, T:0.68
Consensus pattern (17 bp):
TCTTCTTTTTTTTGAAA
Found at i:6875585 original size:18 final size:18
Alignment explanation
Indices: 6875559--6875617 Score: 88
Period size: 18 Copynumber: 3.4 Consensus size: 18
6875549 ATTGAAGCCC
6875559 TCTT-TTTTTTTTT-AAA
1 TCTTCTTTTTTTTTGAAA
6875575 TCTTC-TTTTTTTTGAAA
1 TCTTCTTTTTTTTTGAAA
*
6875592 TCTTCTTTCTTTTTGAAA
1 TCTTCTTTTTTTTTGAAA
6875610 TCTTCTTT
1 TCTTCTTT
6875618 CTTTGTTGGA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
16 12 0.31
17 8 0.21
18 19 0.49
ACGTcount: A:0.15, C:0.14, G:0.03, T:0.68
Consensus pattern (18 bp):
TCTTCTTTTTTTTTGAAA
Found at i:6875618 original size:18 final size:18
Alignment explanation
Indices: 6875566--6875621 Score: 96
Period size: 18 Copynumber: 3.2 Consensus size: 18
6875556 CCCTCTTTTT
*
6875566 TTTTTTAAATCTTCTTT-
1 TTTTTGAAATCTTCTTTC
6875583 TTTTTGAAATCTTCTTTC
1 TTTTTGAAATCTTCTTTC
6875601 TTTTTGAAATCTTCTTTC
1 TTTTTGAAATCTTCTTTC
6875619 TTT
1 TTT
6875622 GTTGGACATC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
17 16 0.43
18 21 0.57
ACGTcount: A:0.16, C:0.14, G:0.04, T:0.66
Consensus pattern (18 bp):
TTTTTGAAATCTTCTTTC
Found at i:6876635 original size:13 final size:13
Alignment explanation
Indices: 6876617--6876644 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
6876607 AAGCCCTCTT
6876617 TTTTTTTTAAATC
1 TTTTTTTTAAATC
6876630 TTTTTTTTAAATC
1 TTTTTTTTAAATC
6876643 TT
1 TT
6876645 ATTTCTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTTTTTAAATC
Found at i:6879195 original size:31 final size:32
Alignment explanation
Indices: 6879137--6879205 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 32
6879127 GAGTGGCTAC
* * *
6879137 TTGTTACAAATCGATAACGTTGGTGACC-ATT
1 TTGTTACAAATCAATAACATTAGTGACCAATT
* *
6879168 TTGTTACAAATCAATTACATTATTGACCAATT
1 TTGTTACAAATCAATAACATTAGTGACCAATT
6879200 TT-TTAC
1 TTGTTAC
6879206 TTTTGAAACT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 27 0.84
32 5 0.16
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.41
Consensus pattern (32 bp):
TTGTTACAAATCAATAACATTAGTGACCAATT
Found at i:6879442 original size:15 final size:15
Alignment explanation
Indices: 6879422--6879451 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
6879412 ATTACCTTTT
6879422 AAAATAATTTTAAGA
1 AAAATAATTTTAAGA
6879437 AAAATAATTTTAAGA
1 AAAATAATTTTAAGA
6879452 GATAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (15 bp):
AAAATAATTTTAAGA
Found at i:6881431 original size:3 final size:3
Alignment explanation
Indices: 6881416--6881473 Score: 66
Period size: 3 Copynumber: 19.3 Consensus size: 3
6881406 AAAAAGAAAA
*
6881416 AAT AAT -AT AAAT AAT AAT AAT AAT ATT AAT AAT AA- AAGT AAT AAT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
*
6881461 AGT AAT AAT AAT A
1 AAT AAT AAT AAT A
6881474 TAAATAACAA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
2 4 0.09
3 39 0.83
4 4 0.09
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:6881433 original size:12 final size:12
Alignment explanation
Indices: 6881416--6881480 Score: 71
Period size: 12 Copynumber: 5.2 Consensus size: 12
6881406 AAAAAGAAAA
6881416 AATAATATAAAT
1 AATAATATAAAT
6881428 AATAATAATAATATT
1 AATAAT-ATAA-A-T
6881443 AATAATA-AAAGT
1 AATAATATAAA-T
6881455 AATAATAGT-AAT
1 AATAATA-TAAAT
6881467 AATAATATAAAT
1 AATAATATAAAT
6881479 AA
1 AA
6881481 CAACCCGGAC
Statistics
Matches: 46, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
11 1 0.02
12 28 0.61
13 8 0.17
14 2 0.04
15 7 0.15
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (12 bp):
AATAATATAAAT
Found at i:6884200 original size:2 final size:2
Alignment explanation
Indices: 6884195--6884225 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
6884185 TTATTGTGTG
6884195 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6884226 AACGCCTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6891245 original size:3 final size:3
Alignment explanation
Indices: 6891237--6891317 Score: 78
Period size: 3 Copynumber: 27.0 Consensus size: 3
6891227 AAATAAAAAT
* * *
6891237 TAA TAA TAA TAA TAA TAA T-A TAAA TAA TAA TAT TAT TAT TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
*
6891282 TAA -AA GTAA TAA TAG TAA TAA TAA T-A TAAA TAA TAA
1 TAA TAA -TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA
6891318 CCCGGACAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
2 6 0.09
3 56 0.82
4 6 0.09
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:6896649 original size:3 final size:3
Alignment explanation
Indices: 6896637--6896706 Score: 63
Period size: 3 Copynumber: 23.7 Consensus size: 3
6896627 AATTTTTTCA
* * *
6896637 TAT T-T TAT TAT TAT AAT TAT TAT AAT TAT TAC TAT TAT TAT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
6896683 TTT TAT TAAT AAA TAT TAT TAT TA
1 TAT TAT T-AT TAT TAT TAT TAT TA
6896707 CATATTACAG
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
2 4 0.08
3 46 0.88
4 2 0.04
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:6896703 original size:30 final size:30
Alignment explanation
Indices: 6896636--6896706 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
6896626 AAATTTTTTC
*
6896636 ATATT-TTATTATTATAATTATTATAATTA
1 ATATTATTATTATTATAATTATTATAATAA
* * *
6896665 TTACTATTATTATTAT-ATTTTTATTAATAA
1 ATATTATTATTATTATAATTATTA-TAATAA
6896695 ATATTATTATTA
1 ATATTATTATTA
6896707 CATATTACAG
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.59
Consensus pattern (30 bp):
ATATTATTATTATTATAATTATTATAATAA
Found at i:6898132 original size:19 final size:21
Alignment explanation
Indices: 6898102--6898146 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
6898092 CTTTATTACT
*
6898102 TTTTATATTTTAATACT-ATA
1 TTTTATATTTTAATAATCATA
*
6898122 TTTTA-ATTTTATTAATCATA
1 TTTTATATTTTAATAATCATA
6898142 TTTTA
1 TTTTA
6898147 CTTTCATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTATATTTTAATAATCATA
Found at i:6898173 original size:16 final size:16
Alignment explanation
Indices: 6898152--6898182 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6898142 TTTTACTTTC
*
6898152 ATATATTTATGATTAT
1 ATATATTTATCATTAT
6898168 ATATATTTATCATTA
1 ATATATTTATCATTA
6898183 GTATTACTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (16 bp):
ATATATTTATCATTAT
Found at i:6898474 original size:26 final size:29
Alignment explanation
Indices: 6898414--6898474 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 29
6898404 TAAAAAAATA
6898414 AATATTTTAATATATAAATCTTTTTTTAT
1 AATATTTTAATATATAAATCTTTTTTTAT
* *
6898443 ATTATTTT-CTAT-TAAAT-TTTTTTT-T
1 AATATTTTAATATATAAATCTTTTTTTAT
6898468 CAATATT
1 -AATATT
6898475 AAGAAAAGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.04
26 12 0.43
27 5 0.18
28 3 0.11
29 7 0.25
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (29 bp):
AATATTTTAATATATAAATCTTTTTTTAT
Found at i:6898593 original size:11 final size:13
Alignment explanation
Indices: 6898555--6898595 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 13
6898545 AATAAAATAT
6898555 ATATATATATATTA
1 ATATAT-TATATTA
*
6898569 ATATATTATCTTA
1 ATATATTATATTA
6898582 A-A-ATTATATTA
1 ATATATTATATTA
6898593 ATA
1 ATA
6898596 AACTTAACAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 9 0.38
12 2 0.08
13 7 0.29
14 6 0.25
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (13 bp):
ATATATTATATTA
Found at i:6900770 original size:12 final size:13
Alignment explanation
Indices: 6900753--6900781 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
6900743 ACATTCACAT
6900753 ATTTACA-TTTGC
1 ATTTACATTTTGC
6900765 ATTTACATTTTGC
1 ATTTACATTTTGC
6900778 ATTT
1 ATTT
6900782 TTTTTCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.24, C:0.14, G:0.07, T:0.55
Consensus pattern (13 bp):
ATTTACATTTTGC
Found at i:6903590 original size:20 final size:20
Alignment explanation
Indices: 6903565--6903619 Score: 96
Period size: 19 Copynumber: 2.9 Consensus size: 20
6903555 TTATACTTGA
6903565 AAAAAAAGGAAAAAAATGAG
1 AAAAAAAGGAAAAAAATGAG
6903585 AAAAAAAGG-AAAAAATGAG
1 AAAAAAAGGAAAAAAATGAG
6903604 AAAAAAA-GAAAAAAAT
1 AAAAAAAGGAAAAAAAT
6903620 TGAACCAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
18 1 0.03
19 24 0.71
20 9 0.26
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.05
Consensus pattern (20 bp):
AAAAAAAGGAAAAAAATGAG
Found at i:6907080 original size:74 final size:75
Alignment explanation
Indices: 6906918--6907086 Score: 198
Period size: 74 Copynumber: 2.3 Consensus size: 75
6906908 ATCAGCAAGA
* * *
6906918 AGCAAATGATGGGGCATGCTGAAAGCCCCTCTGAATCAAAATCATGAATGTTGATGTATTTTGAA
1 AGCAAATGATGGGGCATGCTGAAAGCCCCTCTCAATCAAAATCATGAATGTTGACGCATTTTGAA
6906983 CATTTATATC
66 CATTTATATC
* * * *
6906993 AGCAAATGTTGGGGCATGCTGAAAG-CCCTTTCAATCAGAATGGA-GAATGTTGACGCATTTTGA
1 AGCAAATGATGGGGCATGCTGAAAGCCCCTCTCAATCAAAAT-CATGAATGTTGACGCATTTTGA
** * *
6907056 ATGTTTGTATT
65 ACATTTATATC
* *
6907067 AGCCAATGCTGGGGCATGCT
1 AGCAAATGATGGGGCATGCT
6907087 AAAACCCATA
Statistics
Matches: 80, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
74 55 0.69
75 25 0.31
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (75 bp):
AGCAAATGATGGGGCATGCTGAAAGCCCCTCTCAATCAAAATCATGAATGTTGACGCATTTTGAA
CATTTATATC
Found at i:6908040 original size:50 final size:50
Alignment explanation
Indices: 6907965--6908059 Score: 145
Period size: 50 Copynumber: 1.9 Consensus size: 50
6907955 CCAGAAATCC
* * * *
6907965 GGGCAGAAGCCACAAGAAAGGATGAATGTGTTTTCAAATGTTTTACATCT
1 GGGCAGAAACCACAAGAAAAGATGAATGTATTGTCAAATGTTTTACATCT
*
6908015 GGGCAGAAACCACAGGAAAAGATGAATGTATTGTCAAATGTTTTA
1 GGGCAGAAACCACAAGAAAAGATGAATGTATTGTCAAATGTTTTA
6908060 TGAACCAGTG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (50 bp):
GGGCAGAAACCACAAGAAAAGATGAATGTATTGTCAAATGTTTTACATCT
Found at i:6908458 original size:22 final size:22
Alignment explanation
Indices: 6908430--6908552 Score: 192
Period size: 22 Copynumber: 5.6 Consensus size: 22
6908420 ACATCTACAT
6908430 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
6908452 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
*
6908474 TTTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
*
6908496 TCTTCAAAGATGATAGATTCTA
1 TCTTCAAAGATGATAGATTCTC
* * *
6908518 TTTTTAAAGATGATAGATTATC
1 TCTTCAAAGATGATAGATTCTC
*
6908540 TTTTCAAAGATGA
1 TCTTCAAAGATGA
6908553 AAGCTTTATT
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 93 1.00
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (22 bp):
TCTTCAAAGATGATAGATTCTC
Found at i:6909349 original size:76 final size:76
Alignment explanation
Indices: 6909223--6909404 Score: 303
Period size: 76 Copynumber: 2.4 Consensus size: 76
6909213 CTATTTCTCA
*
6909223 CATCTGTAAGTCCTACAATGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
6909288 AGCCTTAGGGT
66 AACCTTAGGGT
6909299 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
6909364 AACCTTCGGGT
66 AACCTTAGGGT
* *
6909375 CAGCTGTAAGCCCTACAGTGCA-GAATGTTT
1 CATCTGTAAGTCCTACAGTGCATG-ATGTTT
6909405 TTTTCTTAAA
Statistics
Matches: 100, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
75 1 0.01
76 99 0.99
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AACCTTAGGGT
Found at i:6909624 original size:112 final size:113
Alignment explanation
Indices: 6909414--6910094 Score: 683
Period size: 124 Copynumber: 5.8 Consensus size: 113
6909404 TTTTTCTTAA
*
6909414 AACATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
1 AACATTTCCA-GAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* * *
6909479 GAGAAGAACTTGTTCAACTTTTTGCTTGAATTCAT-C-ATTCGATGGATC
65 GAGAAGAACTTGTTCAAC-TTTTGCTTGAATTCATACAAGTAGATAGATC
*
6909527 AGCATTTCCAGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
1 AACATTTCCAGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
* *
6909592 AGAAGAACTTGTTCAATCTTTTGCTTGAATTCAT-C-ACTCGATAGATC
66 AGAAGAACTTGTTCAA-CTTTTGCTTGAATTCATACAAGTAGATAGATC
* * *
6909639 AACATTTCCAGGTAGAGTTCATAATTAGAAGAACTCATCTGAAGAAGGAAGATGAAGTTCATAAT
1 AACATTTCCA-GAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* * * * *
6909704 GAGAAGAACTTGTTTAATATTTTTCATG-ATTCTATCACAGAAGGAGATAGATC
65 GAGAAGAACTTGTTCAA-CTTTTGCTTGAATTC-AT-AC--AAGTAGATAGATC
* *
6909757 AGCATTAATTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTT
1 A--A--CA--TTTCCAGA-AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTT
* * * * *
6909822 CATAATGAGAATAGCTTGTTCAACCTTTTGCATG-ACTCTATCACAGAAGGAGATAGATC
59 CATAATGAGAAGAACTTGTTCAA-CTTTTGCTTGAATTC-AT-AC--AAGTAGATAGATC
*
6909881 ATCATCAATTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTT
1 A--A-C-A--TTTCCAGA-AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTT
* * * * *
6909946 CATAATGAGAAGAGCTTGTTCAACCTTTTGTTTGACTTTATCACAGAATGAGATAGATCAACATC
59 CATAATGAGAAGAACTTGTTCAA-CTTTTGCTTGAATTCAT-AC---A--AG-TAGAT--AGATC
* *
6910011 AACATTTCCAGAAGTGTTCATAATGAGAAGAACTCATCTGAAGAAGG-AGAAGAAATTCATAATG
1 AACATTTCCAGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
* *
6910075 AGAAGAATTTATTCAACTTT
66 AGAAGAACTTGTTCAACTTT
6910095 GCCTTAATTT
Statistics
Matches: 500, Mismatches: 45, Indels: 38
0.86 0.08 0.07
Matches are distributed among these distances:
112 110 0.22
113 87 0.17
115 1 0.00
118 10 0.02
120 1 0.00
121 4 0.01
122 30 0.06
123 35 0.07
124 206 0.41
125 2 0.00
126 1 0.00
127 3 0.01
128 5 0.01
130 5 0.01
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (113 bp):
AACATTTCCAGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
AGAAGAACTTGTTCAACTTTTGCTTGAATTCATACAAGTAGATAGATC
Found at i:6909992 original size:248 final size:232
Alignment explanation
Indices: 6909414--6910091 Score: 795
Period size: 248 Copynumber: 2.9 Consensus size: 232
6909404 TTTTTCTTAA
*
6909414 AACATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
1 AACATTTCCAGGTAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* * * ** *
6909479 GAGAAGAACTTGTTCAACTTTTTGCTTGA-AT-TCATC---ATTCGATGGATCAGC---ATTTCC
66 GAGAAGAACTTGTTCAACATTTTGTTTGATTTATCA-CAGAATGAGATAGATCAGCATAATTTCC
6909536 AGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACT
130 AGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACT
* * **
6909601 TGTTCAATCTTTTGCTTGAATTCATCACTCGATAGATC
195 TGTTCAACCTTTTGCATGAATTCATCACGAGATAGATC
* * *
6909639 AACATTTCCAGGTAGAGTTCATAATTAGAAGAACTCATCTGAAGAAGGAAGATGAAGTTCATAAT
1 AACATTTCCAGGTAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* * * *
6909704 GAGAAGAACTTGTTTAATATTTT-TCATGATTCTATCACAGAAGGAGATAGATCAGCATTAATTT
66 GAGAAGAACTTGTTCAACATTTTGT-TTGATT-TATCACAGAATGAGATAGATCAGCA-TAA--T
*
6909768 TTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAA
126 TTCCAGA-AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAA
* * *
6909833 TAGCTTGTTCAACCTTTTGCATG-ACTCTATCACAGAAGGAGATAGATC
190 GAACTTGTTCAACCTTTTGCATGAATTC-ATCAC-----GAGATAGATC
6909881 ATCATCAATTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGT
1 A--A-C-A--TTTCCAG-GTAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGT
* * *
6909945 TCATAATGAGAAGAGCTTGTTCAACCTTTTGTTTGACTTTATCACAGAATGAGATAGATCAACAT
59 TCATAATGAGAAGAACTTGTTCAACATTTTGTTTGA-TTTATCACAGAATGAGATAGATCAGCAT
* *
6910010 CAACATTTCCAGAAGTGTTCATAATGAGAAGAACTCATCTGAAGAAGG-AGAAGAAATTCATAAT
123 --A-ATTTCCAGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* *
6910074 GAGAAGAATTTATTCAAC
185 GAGAAGAACTTGTTCAAC
6910092 TTTGCCTTAA
Statistics
Matches: 384, Mismatches: 37, Indels: 43
0.83 0.08 0.09
Matches are distributed among these distances:
225 86 0.22
227 2 0.01
228 3 0.01
230 11 0.03
234 1 0.00
236 11 0.03
237 80 0.21
242 9 0.02
244 1 0.00
245 1 0.00
246 30 0.08
247 34 0.09
248 109 0.28
249 5 0.01
250 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (232 bp):
AACATTTCCAGGTAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
GAGAAGAACTTGTTCAACATTTTGTTTGATTTATCACAGAATGAGATAGATCAGCATAATTTCCA
GAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTT
GTTCAACCTTTTGCATGAATTCATCACGAGATAGATC
Found at i:6910440 original size:3 final size:3
Alignment explanation
Indices: 6910428--6910507 Score: 72
Period size: 3 Copynumber: 26.7 Consensus size: 3
6910418 AATTTTTGCC
* * * * *
6910428 TAT T-T TAT TAT TAT AAT TAT TAT AAT TGT TAT AAT TAT TAT AAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
6910475 TAC TAT TAT TAT TAT TAAT AAA TAT TAT TAT TA
1 TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TA
6910508 CATATTACAT
Statistics
Matches: 59, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
2 2 0.03
3 55 0.93
4 2 0.03
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:6910446 original size:9 final size:9
Alignment explanation
Indices: 6910434--6910505 Score: 83
Period size: 9 Copynumber: 7.9 Consensus size: 9
6910424 TGCCTATTTT
6910434 ATTATTATA
1 ATTATTATA
6910443 ATTATTATA
1 ATTATTATA
*
6910452 ATTGTTATA
1 ATTATTATA
6910461 ATTATTATA
1 ATTATTATA
6910470 ATTATTACT-
1 ATTATTA-TA
*
6910479 ATTATTATT
1 ATTATTATA
* *
6910488 ATTAATAAA
1 ATTATTATA
6910497 TATTATTAT
1 -ATTATTAT
6910506 TACATATTAC
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
8 1 0.02
9 45 0.85
10 7 0.13
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (9 bp):
ATTATTATA
Found at i:6911977 original size:19 final size:21
Alignment explanation
Indices: 6911947--6911992 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
6911937 CTTTATTACT
*
6911947 TTTTACATTTTAATACT-ATA
1 TTTTACATTTTAATAATCATA
*
6911967 TTTTA-ATTTTATTAATCATA
1 TTTTACATTTTAATAATCATA
6911987 TTTTAC
1 TTTTAC
6911993 TTTCATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTACATTTTAATAATCATA
Found at i:6912018 original size:16 final size:16
Alignment explanation
Indices: 6911997--6912027 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6911987 TTTTACTTTC
*
6911997 ATATATTTATGATTAT
1 ATATATTTATCATTAT
6912013 ATATATTTATCATTA
1 ATATATTTATCATTA
6912028 GTATTACTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (16 bp):
ATATATTTATCATTAT
Found at i:6912440 original size:11 final size:13
Alignment explanation
Indices: 6912403--6912442 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 13
6912393 TGTTTAATAA
6912403 AATATA-TATATT
1 AATATATTATATT
*
6912415 AATATATTATCTT
1 AATATATTATATT
6912428 AA-A-ATTATATT
1 AATATATTATATT
6912439 AATA
1 AATA
6912443 AACTTAACAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 9 0.38
12 8 0.33
13 7 0.29
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
AATATATTATATT
Found at i:6915948 original size:28 final size:27
Alignment explanation
Indices: 6915892--6915950 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
6915882 TTATCCAAAT
**
6915892 CACCCTTTCGGGTTTTCAACTTGGGCC
1 CACCCTTTCGGGTTTTCAACTTGAACC
* *
6915919 CACCCTTTGTGGGTTTTCATCTTGAACC
1 CACCCTTT-CGGGTTTTCAACTTGAACC
6915947 CACC
1 CACC
6915951 TTATTTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 8 0.30
28 19 0.70
ACGTcount: A:0.14, C:0.34, G:0.19, T:0.34
Consensus pattern (27 bp):
CACCCTTTCGGGTTTTCAACTTGAACC
Found at i:6924676 original size:5 final size:5
Alignment explanation
Indices: 6924664--6924768 Score: 78
Period size: 5 Copynumber: 21.2 Consensus size: 5
6924654 TTAAAAAAGG
* * *
6924664 AAAT- AAATA AAATA AAA-A ATAATA AAAGGA AAAT- -ATTA AAAGGA
1 AAATA AAATA AAATA AAATA A-AATA AAA-TA AAATA AAATA AAA-TA
* *
6924708 AAATA AAATA AAATA AAATA ATA-A AAATCA AAATCA AAATA ATA-A AAATA
1 AAATA AAATA AAATA AAATA AAATA AAAT-A AAAT-A AAATA AAATA AAATA
6924758 AAATA AAATA A
1 AAATA AAATA A
6924769 TGGAAATAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 19
0.74 0.09 0.17
Matches are distributed among these distances:
3 2 0.02
4 12 0.15
5 46 0.57
6 21 0.26
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:6924747 original size:50 final size:50
Alignment explanation
Indices: 6924664--6924768 Score: 133
Period size: 50 Copynumber: 2.1 Consensus size: 50
6924654 TTAAAAAAGG
* * *
6924664 AAAT-AAATAAAATAAAAAATAATAAAAGGAAAATATTAAAAGGAAAATA
1 AAATAAAATAAAATAAAAAATAATAAAAGCAAAATAATAAAAAGAAAATA
* * *
6924713 AAATAAAATAAAATAATAAA-AATCAAAATCAAAATAATAAAAATAAAATA
1 AAATAAAATAAAATAAAAAATAAT-AAAAGCAAAATAATAAAAAGAAAATA
6924763 AAATAA
1 AAATAA
6924769 TGGAAATAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
49 7 0.15
50 41 0.85
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.19
Consensus pattern (50 bp):
AAATAAAATAAAATAAAAAATAATAAAAGCAAAATAATAAAAAGAAAATA
Found at i:6924767 original size:19 final size:19
Alignment explanation
Indices: 6924712--6924783 Score: 101
Period size: 19 Copynumber: 3.7 Consensus size: 19
6924702 AAAGGAAAAT
6924712 AAAATAAAATAAAATAATA
1 AAAATAAAATAAAATAATA
6924731 AAAATCAAAATCAAAATAATA
1 AAAAT-AAAAT-AAAATAATA
*
6924752 AAAATAAAATAAAATAATG
1 AAAATAAAATAAAATAATA
*
6924771 GAAAT-AAATAAAA
1 AAAATAAAATAAAA
6924784 CGTCAGTTCA
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
18 8 0.16
19 17 0.35
20 10 0.20
21 14 0.29
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (19 bp):
AAAATAAAATAAAATAATA
Found at i:6924830 original size:30 final size:30
Alignment explanation
Indices: 6924796--6924852 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
6924786 TCAGTTCAAG
*
6924796 AAATAATAAA-AAATAATTAAATTAAAACGT
1 AAAT-ATAAAGAAAGAATTAAATTAAAACGT
*
6924826 AAATATAAAGAAAGGATTAAATTAAAA
1 AAATATAAAGAAAGAATTAAATTAAAA
6924853 GAAAGATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.25
Consensus pattern (30 bp):
AAATATAAAGAAAGAATTAAATTAAAACGT
Found at i:6925912 original size:31 final size:30
Alignment explanation
Indices: 6925861--6925922 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 30
6925851 AAAATAAAAA
*
6925861 AATAAAAAAAATGATAAATATGTATATGTGT
1 AATAAAAAAAATGATAAATATATA-ATGTGT
*
6925892 AATAAAATAATATGAT-AATATATAATGTGT
1 AATAAAA-AAAATGATAAATATATAATGTGT
6925922 A
1 A
6925923 TATATAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 7 0.25
31 14 0.50
32 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (30 bp):
AATAAAAAAAATGATAAATATATAATGTGT
Found at i:6926032 original size:29 final size:29
Alignment explanation
Indices: 6925998--6926059 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
6925988 ATATATACAC
6925998 TATATA-ATTATAGT-ATAT-AACATAATA
1 TATATATATTATA-TAATATAAACATAATA
*
6926025 TGTATATATTATATAATATAAACATAATA
1 TATATATATTATATAATATAAACATAATA
6926054 TATATA
1 TATATA
6926060 CTATACAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 6 0.20
28 10 0.33
29 14 0.47
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (29 bp):
TATATATATTATATAATATAAACATAATA
Found at i:6926585 original size:35 final size:35
Alignment explanation
Indices: 6926544--6926641 Score: 108
Period size: 36 Copynumber: 2.8 Consensus size: 35
6926534 AACACAGTCA
*
6926544 TCAATTACATTTTAAACCCCAAATTTC-AAAATACT
1 TCAATTACATTCTAAACCCCAAA-TTCAAAAATACT
* *
6926579 TCAATTACATTCTAAATCTCAAATTCAAAAAATACT
1 TCAATTACATTCTAAACCCCAAATTC-AAAAATACT
* * * *
6926615 TCAATCACATGCCAAACCCTAAATTCA
1 TCAATTACATTCTAAACCCCAAATTCA
6926642 TAATCCATTA
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
34 3 0.06
35 21 0.40
36 28 0.54
ACGTcount: A:0.44, C:0.24, G:0.01, T:0.31
Consensus pattern (35 bp):
TCAATTACATTCTAAACCCCAAATTCAAAAATACT
Found at i:6927212 original size:148 final size:148
Alignment explanation
Indices: 6926925--6927204 Score: 479
Period size: 148 Copynumber: 1.9 Consensus size: 148
6926915 AAACTATTTA
* *
6926925 AATTAGAATCAAATAATATTATAATATTATAAATATTTATAATTAAATTTAAACAGAAACTCAAA
1 AATTAGAATCAAATAATATTATAATATTATAAATATTTATAATTAAAATTAAACAAAAACTCAAA
*
6926990 AATTTAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAATAGAAAAAAATTCGAGCCAACT
66 AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAATAGAAAAAAATTCGAGCCAACT
6927055 ATATCATAAACTGAACTG
131 ATATCATAAACTGAACTG
**
6927073 AATTAGAATCAAATAATATTATAATATTATAAATATTTATAATTAAAATTAAACAAAAACTTGAA
1 AATTAGAATCAAATAATATTATAATATTATAAATATTTATAATTAAAATTAAACAAAAACTCAAA
* * * *
6927138 AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCATATCGAAAAAATTTCGAGTCAACT
66 AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAATAGAAAAAAATTCGAGCCAACT
6927203 AT
131 AT
6927205 TTTATAAATT
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
148 123 1.00
ACGTcount: A:0.49, C:0.10, G:0.06, T:0.35
Consensus pattern (148 bp):
AATTAGAATCAAATAATATTATAATATTATAAATATTTATAATTAAAATTAAACAAAAACTCAAA
AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAATAGAAAAAAATTCGAGCCAACT
ATATCATAAACTGAACTG
Found at i:6928853 original size:25 final size:26
Alignment explanation
Indices: 6928823--6928874 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6928813 ATAATAAATG
6928823 AAATCA-TCATAAACATTCAATTAAA
1 AAATCATTCATAAACATTCAATTAAA
* *
6928848 AAATCATTCATAATCATTCTATTAAA
1 AAATCATTCATAAACATTCAATTAAA
6928874 A
1 A
6928875 CAAACACGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (26 bp):
AAATCATTCATAAACATTCAATTAAA
Found at i:6933559 original size:19 final size:19
Alignment explanation
Indices: 6933535--6933583 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
6933525 TTGAATAACT
6933535 AAATCGAATATTATATTTG
1 AAATCGAATATTATATTTG
6933554 AAATCGAATATTATATTTG
1 AAATCGAATATTATATTTG
6933573 AAATCGAATAT
1 AAATCGAATAT
6933584 AAAATCTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39
Consensus pattern (19 bp):
AAATCGAATATTATATTTG
Found at i:6933707 original size:35 final size:35
Alignment explanation
Indices: 6933668--6933747 Score: 126
Period size: 35 Copynumber: 2.3 Consensus size: 35
6933658 GGCGTTGGGC
*
6933668 ATGTAATTGAAGTATTTTGGAATTT-GAGGTTTAGA
1 ATGTAATTGAAGTATTTTGGAATTTCG-GGTTTAAA
*
6933703 ATGTAATTGAAGTATTTTGGATTTTCGGGTTTAAA
1 ATGTAATTGAAGTATTTTGGAATTTCGGGTTTAAA
6933738 ATGTAATTGA
1 ATGTAATTGA
6933748 TGATTGTGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
35 41 0.98
36 1 0.02
ACGTcount: A:0.31, C:0.01, G:0.24, T:0.44
Consensus pattern (35 bp):
ATGTAATTGAAGTATTTTGGAATTTCGGGTTTAAA
Found at i:6934185 original size:58 final size:58
Alignment explanation
Indices: 6934081--6934191 Score: 132
Period size: 58 Copynumber: 1.9 Consensus size: 58
6934071 TTAGTTATTT
* * ***
6934081 ATTAAAATAATAATATTATATTATTAACAAATATATTCCTAATATTTAATAATTTTAC
1 ATTAAAATAAAAATATTATATTAATAACAAATATATAAATAATATTTAATAATTTTAC
* ** * *
6934139 ATTAATATAAAAATATTATATTAATATTAAATATATAAATACTATTTTATAAT
1 ATTAAAATAAAAATATTATATTAATAACAAATATATAAATAATATTTAATAAT
6934192 CATATGAGAC
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 43 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (58 bp):
ATTAAAATAAAAATATTATATTAATAACAAATATATAAATAATATTTAATAATTTTAC
Found at i:6934279 original size:24 final size:24
Alignment explanation
Indices: 6934252--6934297 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
6934242 GGTTAATAAT
6934252 TATTA-TACAATATTAATATAAATA
1 TATTAGTACAATA-TAATATAAATA
* *
6934276 TATTAGTATAATATAATGTAAA
1 TATTAGTACAATATAATATAAA
6934298 AATTGGGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 13 0.68
25 6 0.32
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.41
Consensus pattern (24 bp):
TATTAGTACAATATAATATAAATA
Found at i:6934818 original size:15 final size:15
Alignment explanation
Indices: 6934794--6934828 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
6934784 GTTTATTTTC
*
6934794 AAATTTAAAATTAAA
1 AAATTAAAAATTAAA
*
6934809 AAATTAAAAATTAAT
1 AAATTAAAAATTAAA
6934824 AAATT
1 AAATT
6934829 TAATAAATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
AAATTAAAAATTAAA
Found at i:6936755 original size:20 final size:19
Alignment explanation
Indices: 6936730--6936777 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 19
6936720 ATTAATACTT
6936730 TCACATTTAGGATTCATATC
1 TCACATTTA-GATTCATATC
6936750 TCACATTCTAGATTCATATC
1 TCACATT-TAGATTCATATC
*
6936770 TCATATTT
1 TCACATTT
6936778 CATATTCATG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 1 0.04
20 23 0.88
21 2 0.08
ACGTcount: A:0.29, C:0.21, G:0.06, T:0.44
Consensus pattern (19 bp):
TCACATTTAGATTCATATC
Found at i:6936786 original size:20 final size:20
Alignment explanation
Indices: 6936730--6936772 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 20
6936720 ATTAATACTT
6936730 TCACATT-TAGGATTCATATC
1 TCACATTCTA-GATTCATATC
6936750 TCACATTCTAGATTCATATC
1 TCACATTCTAGATTCATATC
6936770 TCA
1 TCA
6936773 TATTTCATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (20 bp):
TCACATTCTAGATTCATATC
Found at i:6936791 original size:13 final size:13
Alignment explanation
Indices: 6936762--6936800 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
6936752 ACATTCTAGA
6936762 TTCATATCTCATAT
1 TTCATAT-TCATAT
*
6936776 TTCATATTCATGT
1 TTCATATTCATAT
*
6936789 TTCAGATTCATA
1 TTCATATTCATA
6936801 GCCCAATGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.28, C:0.18, G:0.05, T:0.49
Consensus pattern (13 bp):
TTCATATTCATAT
Found at i:6937856 original size:23 final size:23
Alignment explanation
Indices: 6937826--6937869 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
6937816 TACGGCATTG
* *
6937826 AATAATAAATTCAATCTAAAAAT
1 AATAATAAATTAAATATAAAAAT
6937849 AATAATAAATTAAATATAAAA
1 AATAATAAATTAAATATAAAA
6937870 CAATCACATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (23 bp):
AATAATAAATTAAATATAAAAAT
Found at i:6939425 original size:29 final size:30
Alignment explanation
Indices: 6939370--6939426 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
6939360 TCCATAAGCT
* *
6939370 TTTCTAAAGTTTATACTTTGGTTACTAAAC
1 TTTCTAAAATTTATACTTTGGTCACTAAAC
*
6939400 TTTC-AAAATTTATATTTTGGTCACTAA
1 TTTCTAAAATTTATACTTTGGTCACTAA
6939427 CCAAAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.32, C:0.12, G:0.09, T:0.47
Consensus pattern (30 bp):
TTTCTAAAATTTATACTTTGGTCACTAAAC
Found at i:6943050 original size:24 final size:23
Alignment explanation
Indices: 6943022--6943094 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 23
6943012 ATTTAAATTT
6943022 AAAACTAATATTTAATATATTATC
1 AAAAC-AATATTTAATATATTATC
** *
6943046 AAAACAATATTTTAATATCACAAAC
1 AAAACAATA-TTTAATAT-ATTATC
6943071 AGAAACAATATTTAA-ATATTATC
1 A-AAACAATATTTAATATATTATC
6943094 A
1 A
6943095 TGTCATAAGC
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
23 8 0.20
24 15 0.38
25 9 0.22
26 8 0.20
ACGTcount: A:0.53, C:0.11, G:0.01, T:0.34
Consensus pattern (23 bp):
AAAACAATATTTAATATATTATC
Found at i:6946958 original size:32 final size:31
Alignment explanation
Indices: 6946899--6946958 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
6946889 TATCTAAATT
* *
6946899 TTCATTTCCAAGTATAATTCTATTATACTAG
1 TTCATTTCAAAGTATAATTCTACTATACTAG
6946930 TTCATTTACAAAGTAT-ATTCTCACTATAC
1 TTCATTT-CAAAGTATAATTCT-ACTATAC
6946959 AATCATAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
31 12 0.48
32 13 0.52
ACGTcount: A:0.33, C:0.18, G:0.05, T:0.43
Consensus pattern (31 bp):
TTCATTTCAAAGTATAATTCTACTATACTAG
Found at i:6947291 original size:23 final size:23
Alignment explanation
Indices: 6947254--6947313 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
6947244 CAGCTCGTAT
6947254 AAATGCACCTAAGTGCCACATAG
1 AAATGCACCTAAGTGCCACATAG
* * *
6947277 AATTGCACCGT-AGTGCCGCGTAG
1 AAATGCACC-TAAGTGCCACATAG
*
6947300 AAATGCACCAAAGT
1 AAATGCACCTAAGT
6947314 ACCATATAAG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
23 29 0.97
24 1 0.03
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (23 bp):
AAATGCACCTAAGTGCCACATAG
Found at i:6951689 original size:602 final size:601
Alignment explanation
Indices: 6950538--6951736 Score: 1829
Period size: 602 Copynumber: 2.0 Consensus size: 601
6950528 GTGCTAATCA
* * * ** *
6950538 TTTCTCACATGTAATTGACTCTCAGATTTATTTTTTTGGTAAGCAAATTTTTTTAGTGTTCCAGT
1 TTTCTCACATATAATCGACTCTCAGACTTATTTCGTTGGTAAGCAAATTTTTTTAGTGCTCCAGT
* ** *
6950603 CATACCTAAAAATCATTGGTGGCCACTCCCTCGGACCACAATTCAATATCCCATTCGAAGCAATA
66 CATACCTAAAAATCATTGGTGGCCACACCCTCAAACCACAATTCAATATCCCATTCGAAACAATA
* * * *
6950668 CTTTAAAGTAGAACCCATACCCCAACCCTTAAAGACTTTTCGACAACTATAGTTGATAACTATCA
131 CTTTAAAGGAGAACCCATACCCCAACCCTTAAAGACGTTTCAACAACGATAGTTGATAACTATCA
*
6950733 TATAATCATTTAAAAAATCCAATTCTTCTCTTTTATATCAAATTCAACTTTTTTTTTATTCAATC
196 TATAATCATTTAAAAAATCCAATTCTTCTCTTTTATATCAAATTCAACTTTCTTTTTATTCAATC
* * *
6950798 CATATTTTAAACTTTCATTTCTTGAAGATCAGTATCATAGTATCATCACTCACTATGCTTCCGCT
261 CATACTTTAAACTTTCATTTCTTGAAGATCAGTATCATAGTATAATCACTCACTATGCTTCCGAT
* *
6950863 GCTCTACCAAATCTTTAAGTAAGCACATTAATTGTTAACTCTTGATCACAATTCAGAAAATTTCC
326 GCTCTACCAAATCTTCAAGTAAGCACATTAATTGTTAAATCTTGATCACAATTCAGAAAATTTCC
* * *
6950928 CTTTCATAAATTTTAAGATTTCTCAAGACATAAGTTTCAATTTTTACTTCTTATCTTGTTACACT
391 CTTTCATAAATTTTAAGATTCCTCAAAACATAAGTTGCAATTTTTACTTCTTATCTTGTTACACT
6950993 TATCAGACCATTATGAAATACGTCACTATCAGACATATAATCCTTGCATAATTTATCATAATCTA
456 TATCAGACCATTATGAAATACGTCACTATCAGACATATAATCCTTGCATAATTTATCATAATCTA
* * ** * *
6951058 TTTACTCTAGTAGTTTGCACTATTAGTAAAGATATAATAATT-TGTATTAATTTATGGACTTAAA
521 TTTACTCTAGTAGTTTGCACTACTAGTAAAGAAATAAT-ATTCAATATTAATCTATGCACTTAAA
*
6951122 ATTTATTCTATTTTTTC
585 ATTTATTCCATTTTTTC
* *
6951139 TTTCTCACATATAATCGACT-TCCGTACTTATTTCGTTGGTAAGCAAATTTTTTTGGTGCTCCAG
1 TTTCTCACATATAATCGACTCTCAG-ACTTATTTCGTTGGTAAGCAAATTTTTTTAGTGCTCCAG
* *
6951203 TCATACCTAAAAA-CAATTGGTGGCGACACCCTCAAACCATAATTCAATATCCCATTCGAAACAA
65 TCATACCTAAAAATC-ATTGGTGGCCACACCCTCAAACCACAATTCAATATCCCATTCGAAACAA
* * * *
6951267 TACTTTTAAGCGA-AACCCATATCCCAACCTTTAAAGACGTTTCAACAACGATATTTGATAACTA
129 TACTTTAAAG-GAGAACCCATACCCCAACCCTTAAAGACGTTTCAACAACGATAGTTGATAACTA
* *
6951331 TCATATAATCTTTTTAAAAAAATCCAATTCTTCTCTTTTA-ACTCAAATTTAAC-TTCTTTTTAT
193 TCATATAATC-ATTT-AAAAAATCCAATTCTTCTCTTTTATA-TCAAATTCAACTTTCTTTTTAT
* *
6951394 TCAATCCATACTTTAAATTTTCATTTCTTGATGATCAGTATCATAGTATAATCACTCACTATGCT
255 TCAATCCATACTTTAAACTTTCATTTCTTGAAGATCAGTATCATAGTATAATCACTCACTATGCT
* *
6951459 TCTGATGCTCTACCAAATCTTCAAGTAAGCATATTAATTGTTAAATCTTGATCACAATTCAGAAA
320 TCCGATGCTCTACCAAATCTTCAAGTAAGCACATTAATTGTTAAATCTTGATCACAATTCAGAAA
*
6951524 ATTTCCCTTTCATAAGTTTTAAGATTCCTCAAAACATAAGTTGCAATTTTTACTTCTTA-CATTG
385 ATTTCCCTTTCATAAATTTTAAGATTCCTCAAAACATAAGTTGCAATTTTTACTTCTTATC-TTG
6951588 TTACA-TATATCAGACCATTATGAAATACGTCACTATCAGACATATAATCCTTGCATAATTTATC
449 TTACACT-TATCAGACCATTATGAAATACGTCACTATCAGACATATAATCCTTGCATAATTTATC
* * *
6951652 ATAATTTCTTTACTCTAGTAGTTTGCGCTACTAGTAAAGAAATAATATTCAATATTAATCTATGC
513 ATAATCTATTTACTCTAGTAGTTTGCACTACTAGTAAAGAAATAATATTCAATATTAATCTATGC
6951717 ACTTAAAATTTATTCCATTT
578 ACTTAAAATTTATTCCATTT
6951737 GTTCCATTAA
Statistics
Matches: 541, Mismatches: 48, Indels: 17
0.89 0.08 0.03
Matches are distributed among these distances:
600 4 0.01
601 177 0.33
602 326 0.60
603 34 0.06
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.39
Consensus pattern (601 bp):
TTTCTCACATATAATCGACTCTCAGACTTATTTCGTTGGTAAGCAAATTTTTTTAGTGCTCCAGT
CATACCTAAAAATCATTGGTGGCCACACCCTCAAACCACAATTCAATATCCCATTCGAAACAATA
CTTTAAAGGAGAACCCATACCCCAACCCTTAAAGACGTTTCAACAACGATAGTTGATAACTATCA
TATAATCATTTAAAAAATCCAATTCTTCTCTTTTATATCAAATTCAACTTTCTTTTTATTCAATC
CATACTTTAAACTTTCATTTCTTGAAGATCAGTATCATAGTATAATCACTCACTATGCTTCCGAT
GCTCTACCAAATCTTCAAGTAAGCACATTAATTGTTAAATCTTGATCACAATTCAGAAAATTTCC
CTTTCATAAATTTTAAGATTCCTCAAAACATAAGTTGCAATTTTTACTTCTTATCTTGTTACACT
TATCAGACCATTATGAAATACGTCACTATCAGACATATAATCCTTGCATAATTTATCATAATCTA
TTTACTCTAGTAGTTTGCACTACTAGTAAAGAAATAATATTCAATATTAATCTATGCACTTAAAA
TTTATTCCATTTTTTC
Found at i:6954280 original size:20 final size:20
Alignment explanation
Indices: 6954253--6954301 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
6954243 TTCACATTTT
6954253 AGATTCATATATCATATTCC
1 AGATTCATATATCATATTCC
* * *
6954273 ATATTCATATCTCATATTCT
1 AGATTCATATATCATATTCC
6954293 AGATTCATA
1 AGATTCATA
6954302 GCCCAATGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.35, C:0.18, G:0.04, T:0.43
Consensus pattern (20 bp):
AGATTCATATATCATATTCC
Found at i:6956923 original size:29 final size:30
Alignment explanation
Indices: 6956861--6956933 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 30
6956851 AAAATTATAT
* * * *
6956861 TTTTGGTCCCTAAACTTTCCAAAGTTTATA
1 TTTTAGTCACTAAACTTTCCAAAATTTACA
* *
6956891 TTTTAGTCATTAAACTTT-TAAAATTTACA
1 TTTTAGTCACTAAACTTTCCAAAATTTACA
6956920 TTTTAGTCACTAAA
1 TTTTAGTCACTAAA
6956934 TGTTTTTTGG
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 21 0.58
30 15 0.42
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.45
Consensus pattern (30 bp):
TTTTAGTCACTAAACTTTCCAAAATTTACA
Found at i:6959267 original size:21 final size:21
Alignment explanation
Indices: 6959241--6959280 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
6959231 TCTTACATTA
*
6959241 TTTAAATATGATTTTTTAATG
1 TTTAAATATAATTTTTTAATG
6959262 TTTAAATATAATTTTTTAA
1 TTTAAATATAATTTTTTAA
6959281 ACCTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
TTTAAATATAATTTTTTAATG
Found at i:6962586 original size:24 final size:24
Alignment explanation
Indices: 6962558--6962607 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
6962548 TACATTTATT
6962558 TTTAA-TATATAATAATATTATATA
1 TTTAACTAT-TAATAATATTATATA
*
6962582 TTTAACTATTAATAATTTTATATA
1 TTTAACTATTAATAATATTATATA
6962606 TT
1 TT
6962608 AAATTCAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 21 0.88
25 3 0.12
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (24 bp):
TTTAACTATTAATAATATTATATA
Found at i:6965880 original size:109 final size:108
Alignment explanation
Indices: 6965666--6965880 Score: 385
Period size: 109 Copynumber: 2.0 Consensus size: 108
6965656 ACCAACTCGG
*
6965666 GCAAATGAAACGTCTTCACGGTCCCATGCAATTCTTCAGGTACCAGTAATGTATGGGGCTAAATT
1 GCAAATGAAACGTCTTCACCGTCCCATGCAATTCTTCAGGTACCAGTAATGTATGGGGCTAAATT
*
6965731 ACCTGCTTTATTCCTCTAATGTTATGACATTCTTATAAACACC
66 ACCTGCTTTATTACTCTAATGTTATGACATTCTTATAAACACC
6965774 GCAAATGAAACGTCTTCACCGTCCCATGCAATTCTTCAGGTACCAGTAATGATATGGGGCTAAAT
1 GCAAATGAAACGTCTTCACCGTCCCATGCAATTCTTCAGGTACCAGTAATG-TATGGGGCTAAAT
* *
6965839 TACCTGCTTTGTTATTCTAATGTTATGACATTCTTATAAACA
65 TACCTGCTTTATTACTCTAATGTTATGACATTCTTATAAACA
6965881 TGAGTTGCTT
Statistics
Matches: 102, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
108 50 0.49
109 52 0.51
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (108 bp):
GCAAATGAAACGTCTTCACCGTCCCATGCAATTCTTCAGGTACCAGTAATGTATGGGGCTAAATT
ACCTGCTTTATTACTCTAATGTTATGACATTCTTATAAACACC
Found at i:6969610 original size:105 final size:103
Alignment explanation
Indices: 6969501--6969702 Score: 255
Period size: 105 Copynumber: 1.9 Consensus size: 103
6969491 TTTACATTCT
* * * * * * *
6969501 ATGTTCTGTAAAAA-GCTTCAGTATCGATACTCAT-CTTGAGAGTATTGATTCTCTCCCTCTTCA
1 ATGTTCTG-AAAAATACTTCAATATCGATACCCATACTAG-GAGTATCGATACTCTACC-C-TCA
* *
6969564 GTATCGATACTCCCATGAGTACCGATACCAAAATTGTTTTCG
62 GTATCGATACTCCAATCAGTACCGATACCAAAATTGTTTTCG
* *
6969606 ATGTTTTGAAAAATACTTCAATATCGATACCCTTACTAGGAGTATCGATACTCTACCCTCAGTAT
1 ATGTTCTGAAAAATACTTCAATATCGATACCCATACTAGGAGTATCGATACTCTACCCTCAGTAT
6969671 CGATACTCCAATCAGTACCGATACCAAAATTG
66 CGATACTCCAATCAGTACCGATACCAAAATTG
6969703 GTTAATGGAA
Statistics
Matches: 84, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
103 37 0.44
104 6 0.07
105 38 0.45
106 3 0.04
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (103 bp):
ATGTTCTGAAAAATACTTCAATATCGATACCCATACTAGGAGTATCGATACTCTACCCTCAGTAT
CGATACTCCAATCAGTACCGATACCAAAATTGTTTTCG
Found at i:6972053 original size:3 final size:3
Alignment explanation
Indices: 6972047--6972079 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
6972037 TATTATTATT
6972047 TAA TAA TAA TAA TAA TAA TAA TATA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TA
6972080 TTATTATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:6972092 original size:25 final size:25
Alignment explanation
Indices: 6972047--6972096 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
6972037 TATTATTATT
6972047 TAATAATAATAATAATAATAATATA
1 TAATAATAATAATAATAATAATATA
* *
6972072 TAATAAT-ATTATTATATATAATATA
1 TAATAATAATAATAATA-ATAATATA
6972097 AACGTCACTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
TAATAATAATAATAATAATAATATA
Found at i:6972834 original size:20 final size:20
Alignment explanation
Indices: 6972806--6972940 Score: 198
Period size: 20 Copynumber: 6.8 Consensus size: 20
6972796 AGATGTCCTA
* * *
6972806 AAGGATTTAGAAATTACCCG
1 AAGGCTTTACAAATGACCCG
*
6972826 AAGGCTTTACACATGACCCG
1 AAGGCTTTACAAATGACCCG
6972846 AAGGCTTTACAAATGACCCG
1 AAGGCTTTACAAATGACCCG
* *
6972866 GAGGCTTTACAAATGACTCG
1 AAGGCTTTACAAATGACCCG
* *
6972886 GAGGCTTTACAAATGACCTG
1 AAGGCTTTACAAATGACCCG
6972906 AAGGCTTTACAAATGACCCG
1 AAGGCTTTACAAATGACCCG
6972926 AAGGCTTTACAAATG
1 AAGGCTTTACAAATG
6972941 CGTGATAAAT
Statistics
Matches: 104, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 104 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.23
Consensus pattern (20 bp):
AAGGCTTTACAAATGACCCG
Found at i:6973543 original size:22 final size:22
Alignment explanation
Indices: 6973509--6973560 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
6973499 AATAAAGCTT
*
6973509 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTAAAAAGAGAATCTA
*
6973531 TTATCTTTAAAAAGAGAATCTA
1 TCATCTTTAAAAAGAGAATCTA
6973553 TCATCTTT
1 TCATCTTT
6973561 GCAGAATGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.38
Consensus pattern (22 bp):
TCATCTTTAAAAAGAGAATCTA
Found at i:6988156 original size:14 final size:14
Alignment explanation
Indices: 6988137--6988167 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
6988127 ATTAGATGAT
6988137 TAAAGGTGATAGAG
1 TAAAGGTGATAGAG
6988151 TAAAGGTGATAGAG
1 TAAAGGTGATAGAG
6988165 TAA
1 TAA
6988168 TAAGTTGGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.32, T:0.23
Consensus pattern (14 bp):
TAAAGGTGATAGAG
Found at i:6990081 original size:2 final size:2
Alignment explanation
Indices: 6990076--6990105 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
6990066 GTGCTGTGTG
6990076 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6990106 GAACATAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6991616 original size:13 final size:14
Alignment explanation
Indices: 6991591--6991622 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
6991581 TGGAAAATTT
6991591 TAGCAGTGGTACTG
1 TAGCAGTGGTACTG
6991605 TAGCAG-GGTACTG
1 TAGCAGTGGTACTG
6991618 TAGCA
1 TAGCA
6991623 ATGTATTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (14 bp):
TAGCAGTGGTACTG
Found at i:6996768 original size:56 final size:56
Alignment explanation
Indices: 6996700--6996878 Score: 322
Period size: 56 Copynumber: 3.2 Consensus size: 56
6996690 GAACATGTAT
*
6996700 GTGGTACTTCGGTACACTTATTTGGTCCATTCTATTATGTGTATGGTTCTTAAGGA
1 GTGGTCCTTCGGTACACTTATTTGGTCCATTCTATTATGTGTATGGTTCTTAAGGA
6996756 GTGGTCCTTCGGTACACTTATTTGGTCCATTCTATTATGTGTATGGTTCTTAAGGA
1 GTGGTCCTTCGGTACACTTATTTGGTCCATTCTATTATGTGTATGGTTCTTAAGGA
* * *
6996812 GTGGTCCTTCGGTAAACTTATTTAGTCCATTATATTATGTGTATGGTTCTTAAGGA
1 GTGGTCCTTCGGTACACTTATTTGGTCCATTCTATTATGTGTATGGTTCTTAAGGA
6996868 GTGGTCCTTCG
1 GTGGTCCTTCG
6996879 AGACATATGT
Statistics
Matches: 119, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.19, C:0.15, G:0.23, T:0.42
Consensus pattern (56 bp):
GTGGTCCTTCGGTACACTTATTTGGTCCATTCTATTATGTGTATGGTTCTTAAGGA
Found at i:6996931 original size:18 final size:18
Alignment explanation
Indices: 6996910--6996946 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
6996900 CTTCAGAACG
6996910 TAGTGGTCTTTCGGGACA
1 TAGTGGTCTTTCGGGACA
*
6996928 TAGTGGTCTTTTGGGACA
1 TAGTGGTCTTTCGGGACA
6996946 T
1 T
6996947 TTCTACGCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.14, G:0.32, T:0.38
Consensus pattern (18 bp):
TAGTGGTCTTTCGGGACA
Found at i:7003012 original size:18 final size:18
Alignment explanation
Indices: 7002987--7003032 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
7002977 TATGTGGTCC
*
7002987 TTCAGGACGTAGTGGTAT
1 TTCAGGACATAGTGGTAT
* *
7003005 TTCGGGACATAGTGGTCT
1 TTCAGGACATAGTGGTAT
7003023 TTCAGGACAT
1 TTCAGGACAT
7003033 TTCTACGCGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33
Consensus pattern (18 bp):
TTCAGGACATAGTGGTAT
Found at i:7008395 original size:2 final size:2
Alignment explanation
Indices: 7008390--7008417 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7008380 GTGTTGTGTG
7008390 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7008418 GAGCATAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7009054 original size:56 final size:56
Alignment explanation
Indices: 7008994--7009099 Score: 194
Period size: 56 Copynumber: 1.9 Consensus size: 56
7008984 TTCGGTACAT
*
7008994 TTATTTGGTACATTCTATTATGTGTATGGTTCTTAAGGAGTGGTCCTTCGTTTCAC
1 TTATTTGGTACATTATATTATGTGTATGGTTCTTAAGGAGTGGTCCTTCGTTTCAC
*
7009050 TTATTTGGTCCATTATATTATGTGTATGGTTCTTAAGGAGTGGTCCTTCG
1 TTATTTGGTACATTATATTATGTGTATGGTTCTTAAGGAGTGGTCCTTCG
7009100 AGACATATGT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.18, C:0.13, G:0.23, T:0.46
Consensus pattern (56 bp):
TTATTTGGTACATTATATTATGTGTATGGTTCTTAAGGAGTGGTCCTTCGTTTCAC
Found at i:7009152 original size:18 final size:18
Alignment explanation
Indices: 7009131--7009167 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
7009121 CTTCAAAACG
7009131 TAGTGGTCTTTCGGGACA
1 TAGTGGTCTTTCGGGACA
7009149 TAGTGGTCTTTCGGGACA
1 TAGTGGTCTTTCGGGACA
7009167 T
1 T
7009168 TTCTACGCGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.32, T:0.35
Consensus pattern (18 bp):
TAGTGGTCTTTCGGGACA
Found at i:7014059 original size:19 final size:19
Alignment explanation
Indices: 7014035--7014072 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
7014025 AGATTACACA
7014035 GGGGGTATAGATTCCCCCT
1 GGGGGTATAGATTCCCCCT
*
7014054 GGGGGTATCGATTCCCCCT
1 GGGGGTATAGATTCCCCCT
7014073 AAATGAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.13, C:0.29, G:0.32, T:0.26
Consensus pattern (19 bp):
GGGGGTATAGATTCCCCCT
Found at i:7015079 original size:18 final size:18
Alignment explanation
Indices: 7015056--7015090 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7015046 TATGTGATAT
* *
7015056 GTGGTCGTTCGGGACATA
1 GTGGTCCTTCAGGACATA
7015074 GTGGTCCTTCAGGACAT
1 GTGGTCCTTCAGGACAT
7015091 TTCTACGCGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.20, G:0.34, T:0.29
Consensus pattern (18 bp):
GTGGTCCTTCAGGACATA
Found at i:7017959 original size:3 final size:3
Alignment explanation
Indices: 7017946--7017985 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
7017936 CGAGTTTACG
7017946 TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
7017986 CAAAATGGAG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:7022099 original size:20 final size:20
Alignment explanation
Indices: 7022074--7022130 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
7022064 TTTCAAAGGA
7022074 ATGCACTGATGCACCAATCC
1 ATGCACTGATGCACCAATCC
*
7022094 ATGCACCGATGCACCAATCC
1 ATGCACTGATGCACCAATCC
7022114 ATGCA-TCGATGCACCAA
1 ATGCACT-GATGCACCAA
7022131 GGAATAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.32, C:0.35, G:0.16, T:0.18
Consensus pattern (20 bp):
ATGCACTGATGCACCAATCC
Found at i:7022249 original size:65 final size:62
Alignment explanation
Indices: 7022142--7022299 Score: 158
Period size: 65 Copynumber: 2.5 Consensus size: 62
7022132 GAATAAATTG
* * * * * *
7022142 AACATTGAATGCATTTTATGCATCGATGCACACACCATGCATCGATGCACTCAGG-TTTTTATGA
1 AACATCGAATGCATTTCATGCATCGATGCACACAACAAGCATCAAT--ACTCAGGCTATTT-TG-
7022206 A
62 A
* * *
7022207 AACATCGAATGCATTTGATGCATCCATGCAGA-AGACAAGCATCAATACTCAGGCTATTTTGA
1 AACATCGAATGCATTTCATGCATCGATGCACACA-ACAAGCATCAATACTCAGGCTATTTTGA
* *
7022269 AGCATCGAATGCACTTCATGCATCGATGCAC
1 AACATCGAATGCATTTCATGCATCGATGCAC
7022300 TCTTGGAGCA
Statistics
Matches: 78, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
62 27 0.35
63 9 0.12
64 5 0.06
65 37 0.47
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (62 bp):
AACATCGAATGCATTTCATGCATCGATGCACACAACAAGCATCAATACTCAGGCTATTTTGA
Found at i:7025981 original size:26 final size:26
Alignment explanation
Indices: 7025952--7026002 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
7025942 CTTTAATGTG
7025952 GTATGTATCCAAAACGAGACTCAATT
1 GTATGTATCCAAAACGAGACTCAATT
*
7025978 GTATGTATTCAAAACGAGACTCAAT
1 GTATGTATCCAAAACGAGACTCAAT
7026003 GTGGGACTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (26 bp):
GTATGTATCCAAAACGAGACTCAATT
Found at i:7027767 original size:65 final size:63
Alignment explanation
Indices: 7027695--7027854 Score: 207
Period size: 65 Copynumber: 2.5 Consensus size: 63
7027685 GAATAAATTG
* * *
7027695 AACATCGAATGCATTTTATGCATCGATGCACACA-CCATGCATCGATGCACTCAGG-TTTTTATG
1 AACATCGAATGCATTTCATGCATCGATGCACA-AGACATGCATCGATGCACTC-GGATATTT-T-
7027758 AA
62 AA
* *
7027760 AATATCGAATGCATTTGATGCATCGATGCACAAGACATGCATCGATGCACTCGGACTATTTTAA
1 AACATCGAATGCATTTCATGCATCGATGCACAAGACATGCATCGATGCACTCGGA-TATTTTAA
*
7027824 AACATCGAATGCACTTCATGCATCGATGCAC
1 AACATCGAATGCATTTCATGCATCGATGCAC
7027855 TCTTAGTGCA
Statistics
Matches: 85, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
64 33 0.39
65 48 0.56
66 4 0.05
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (63 bp):
AACATCGAATGCATTTCATGCATCGATGCACAAGACATGCATCGATGCACTCGGATATTTTAA
Found at i:7027854 original size:17 final size:19
Alignment explanation
Indices: 7027826--7027874 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
7027816 TATTTTAAAA
7027826 CATCGAATGCACT-TCA-TG
1 CATCG-ATGCACTCTCAGTG
*
7027844 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTCAGTG
*
7027863 CACCGATGCACT
1 CATCGATGCACT
7027875 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTCAGTG
Found at i:7029693 original size:2 final size:2
Alignment explanation
Indices: 7029686--7029718 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7029676 ACCCACACCC
7029686 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7029719 ATTTACTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7029842 original size:2 final size:2
Alignment explanation
Indices: 7029837--7029872 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
7029827 TTATTATTGA
*
7029837 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7029873 TTTACGAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7030433 original size:61 final size:59
Alignment explanation
Indices: 7030364--7030514 Score: 171
Period size: 61 Copynumber: 2.5 Consensus size: 59
7030354 TAAATTACAC
* ** *
7030364 CCTC-AACTTTTAAACATTCTAATTTCATCCTTAAAGATATG-ACTATCATTCTAAATTAGT
1 CCTCAAACTTTTGAACATT-TAATTTCATCCCCAAA-ATATGAACT-TCAGTCTAAATTAGT
* *
7030424 CCTCAAACTTTTGAACATTTCAATTTAATCCCCAAACTATGAACTTCAGTCTAAATTAGT
1 CCTCAAACTTTTGAACATTT-AATTTCATCCCCAAAATATGAACTTCAGTCTAAATTAGT
*
7030484 CCTAAAACTTTTTGAACATTTTAATTTCATC
1 CCTCAAAC-TTTTGAACA-TTTAATTTCATC
7030515 ACAAACTACA
Statistics
Matches: 78, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
60 30 0.38
61 45 0.58
62 3 0.04
ACGTcount: A:0.34, C:0.21, G:0.05, T:0.39
Consensus pattern (59 bp):
CCTCAAACTTTTGAACATTTAATTTCATCCCCAAAATATGAACTTCAGTCTAAATTAGT
Found at i:7030765 original size:19 final size:19
Alignment explanation
Indices: 7030741--7030778 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
7030731 GTTTAAGGAT
7030741 TAGTTTAA-AATGAGAATTA
1 TAGTTTAAGAATGA-AATTA
7030760 TAGTTTAAGAATGAAATTA
1 TAGTTTAAGAATGAAATTA
7030779 AAATATTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (19 bp):
TAGTTTAAGAATGAAATTA
Found at i:7034796 original size:13 final size:13
Alignment explanation
Indices: 7034772--7034805 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
7034762 CTTCCCATTA
7034772 AAGACGTGCATATG
1 AAGAC-TGCATATG
7034786 AAGACTGCATATG
1 AAGACTGCATATG
7034799 AAGACTG
1 AAGACTG
7034806 TTCAACTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.38, C:0.15, G:0.26, T:0.21
Consensus pattern (13 bp):
AAGACTGCATATG
Found at i:7046287 original size:64 final size:63
Alignment explanation
Indices: 7046202--7046362 Score: 164
Period size: 64 Copynumber: 2.5 Consensus size: 63
7046192 TTGTTTAAGG
* * * *
7046202 TGCATCGATGCACATGCAGTGCATCGATGCAT-TAATTTAAAAAGAAAACATCAAATAGGATTTA
1 TGCATCGATGCATAAGGAGTGCATCGATGCATCCAA-TTAAAAA-AAAACATCAAATAGGATTTA
* * * *
7046266 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATACAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGGAGTGCATCGATGCAT-CCAATTAAAAAAAAACATCAAATAGGATTTA
** *
7046330 TATATCGATGCAT-GGTGTAGTGCATCGATGCAT
1 TGCATCGATGCATAAG-G-AGTGCATCGATGCAT
7046363 ACCTCCATTA
Statistics
Matches: 82, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
63 1 0.01
64 59 0.72
65 21 0.26
66 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (63 bp):
TGCATCGATGCATAAGGAGTGCATCGATGCATCCAATTAAAAAAAAACATCAAATAGGATTTA
Found at i:7046987 original size:23 final size:23
Alignment explanation
Indices: 7046954--7047016 Score: 92
Period size: 23 Copynumber: 2.7 Consensus size: 23
7046944 ATTATTATAT
7046954 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
7046977 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
7047000 GGCACTTA-GGTGCAATT
1 GGCAC-TACGGTGCAATT
7047017 ATATGAGCTG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
23 35 0.97
24 1 0.03
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:7053132 original size:61 final size:62
Alignment explanation
Indices: 7053050--7053185 Score: 170
Period size: 61 Copynumber: 2.2 Consensus size: 62
7053040 AAATTTAAGG
* * *
7053050 TGCATCGATGCACATGCAGTGCATCGATGCAT-TAATTTAAAAGAAAACATCGAATAGGA-TT-
1 TGCATCGATGCATAAGCAGTGCATCGATGCATCCAA-TTAAAA-AAAACATCGAATAGGATTTA
* * * *
7053111 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCATTAATACAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGCAGTGCATCGATGCATCCAATTAAAAAAAACATCGAATAGGATTTA
7053173 TGCATCGATGCAT
1 TGCATCGATGCAT
7053186 GGTATAGTGC
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
60 15 0.23
61 36 0.55
62 14 0.22
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (62 bp):
TGCATCGATGCATAAGCAGTGCATCGATGCATCCAATTAAAAAAAACATCGAATAGGATTTA
Found at i:7053822 original size:23 final size:23
Alignment explanation
Indices: 7053789--7053834 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
7053779 CATATTATAT
7053789 GGCACTACGGTACAATTCTACGC
1 GGCACTACGGTACAATTCTACGC
* *
7053812 GGCACTCCGGTGCAATTCTACGC
1 GGCACTACGGTACAATTCTACGC
7053835 ACTTAGGTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.33, G:0.24, T:0.22
Consensus pattern (23 bp):
GGCACTACGGTACAATTCTACGC
Found at i:7054944 original size:34 final size:34
Alignment explanation
Indices: 7054905--7054995 Score: 146
Period size: 34 Copynumber: 2.7 Consensus size: 34
7054895 TTAGTTTTTC
*
7054905 CGGGCTAAACTAGAACCTTTCCCTAGCTTTTACA
1 CGGGCTAAGCTAGAACCTTTCCCTAGCTTTTACA
*
7054939 CGGGCTAAGCTATAACCTTTCCCTAGCTTTTACA
1 CGGGCTAAGCTAGAACCTTTCCCTAGCTTTTACA
* *
7054973 CGAGCTAAGCTAGAACTTTTCCC
1 CGGGCTAAGCTAGAACCTTTCCC
7054996 CTTTACAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 52 1.00
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (34 bp):
CGGGCTAAGCTAGAACCTTTCCCTAGCTTTTACA
Found at i:7055386 original size:20 final size:20
Alignment explanation
Indices: 7055343--7055446 Score: 120
Period size: 20 Copynumber: 5.1 Consensus size: 20
7055333 CGTTAGACAT
*
7055343 GGGGGAAT-TGGTACCCCATGG
1 GGGGGAATCT-GTACCCCCT-G
*
7055364 GGGGGAATCTGTTCCCCCTG
1 GGGGGAATCTGTACCCCCTG
* *
7055384 GGGTGAATCTGTTCCCCCTG
1 GGGGGAATCTGTACCCCCTG
*
7055404 GGGTGAATCTGTACCCCCTGG
1 GGGGGAATCTGTACCCCCT-G
*
7055425 GGGGGAATCTGTACCTCCTG
1 GGGGGAATCTGTACCCCCTG
7055445 GG
1 GG
7055447 CAATATGATT
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
20 41 0.55
21 33 0.44
22 1 0.01
ACGTcount: A:0.13, C:0.26, G:0.37, T:0.24
Consensus pattern (20 bp):
GGGGGAATCTGTACCCCCTG
Found at i:7055406 original size:41 final size:42
Alignment explanation
Indices: 7055343--7055446 Score: 124
Period size: 41 Copynumber: 2.5 Consensus size: 42
7055333 CGTTAGACAT
* *
7055343 GGGGGAAT-TGGTACCCCATGGGGGGGAATCTGTTCCCCCT-G
1 GGGGGAATCT-GTACCCCCTGGGGGGGAATCTGTACCCCCTGG
* * *
7055384 GGGTGAATCTGTTCCCCCT-GGGGTGAATCTGTACCCCCTGG
1 GGGGGAATCTGTACCCCCTGGGGGGGAATCTGTACCCCCTGG
*
7055425 GGGGGAATCTGTACCTCCTGGG
1 GGGGGAATCTGTACCCCCTGGG
7055447 CAATATGATT
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
40 18 0.35
41 31 0.60
42 3 0.06
ACGTcount: A:0.13, C:0.26, G:0.37, T:0.24
Consensus pattern (42 bp):
GGGGGAATCTGTACCCCCTGGGGGGGAATCTGTACCCCCTGG
Found at i:7062324 original size:21 final size:23
Alignment explanation
Indices: 7062260--7062336 Score: 88
Period size: 23 Copynumber: 3.4 Consensus size: 23
7062250 CAGAGAGAAT
* * *
7062260 CGATACCCCCATTGAAGGGGAAC
1 CGATTCCCCCTTTGAATGGGAAC
7062283 CGATTCCCCCTTTGAATGGGAAC
1 CGATTCCCCCTTTGAATGGGAAC
*
7062306 CGATTCCCTCC-TTG-A-GGGAAT
1 CGATTCCC-CCTTTGAATGGGAAC
7062327 CGATTCCCCC
1 CGATTCCCCC
7062337 CACGGGTTCT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
20 2 0.04
21 13 0.27
22 1 0.02
23 31 0.63
24 2 0.04
ACGTcount: A:0.22, C:0.34, G:0.22, T:0.22
Consensus pattern (23 bp):
CGATTCCCCCTTTGAATGGGAAC
Found at i:7064527 original size:19 final size:19
Alignment explanation
Indices: 7064499--7064548 Score: 82
Period size: 20 Copynumber: 2.6 Consensus size: 19
7064489 CGGAGGGAAC
7064499 CGATTCCCCCCAGGGGATAT
1 CGATTCCCCCCAGGGG-TAT
7064519 CGATTCCCCCCAGGGGTAT
1 CGATTCCCCCCAGGGGTAT
*
7064538 CGATTTCCCCC
1 CGATTCCCCCC
7064549 TGTTTAACGG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.16, C:0.40, G:0.22, T:0.22
Consensus pattern (19 bp):
CGATTCCCCCCAGGGGTAT
Found at i:7066422 original size:34 final size:34
Alignment explanation
Indices: 7066369--7066472 Score: 122
Period size: 34 Copynumber: 3.1 Consensus size: 34
7066359 CCTTACAAAC
* *
7066369 TCCCTAG-TTTTTC-CGGGCTAAACTATAACCTT
1 TCCCTAGCTTTTACACGGGCTAAACTAGAACCTT
*
7066401 TCCCTAGCTTTTACACGGGCTAAGCTAGAACCTT
1 TCCCTAGCTTTTACACGGGCTAAACTAGAACCTT
* * * **
7066435 TCCCTAGCGTTTACATGGGATAATTTAGAACCTT
1 TCCCTAGCTTTTACACGGGCTAAACTAGAACCTT
7066469 TCCC
1 TCCC
7066473 CTTTACAAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
32 7 0.11
33 5 0.08
34 50 0.81
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (34 bp):
TCCCTAGCTTTTACACGGGCTAAACTAGAACCTT
Found at i:7066863 original size:20 final size:21
Alignment explanation
Indices: 7066820--7066881 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
7066810 CCGTTAGACA
7066820 GGGGGAATCGGTACACCCTGG
1 GGGGGAATCGGTACACCCTGG
* * *
7066841 GGGGGAATCTGTTCCCCCTGG
1 GGGGGAATCGGTACACCCTGG
7066862 GGGGG-ATCGGTAC-CCCTGG
1 GGGGGAATCGGTACACCCTGG
7066881 G
1 G
7066882 CAGTCTGATT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
19 7 0.19
20 6 0.17
21 23 0.64
ACGTcount: A:0.13, C:0.26, G:0.44, T:0.18
Consensus pattern (21 bp):
GGGGGAATCGGTACACCCTGG
Found at i:7067852 original size:2 final size:2
Alignment explanation
Indices: 7067845--7067871 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7067835 ATTTACTACT
7067845 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7067872 TATTTAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7068720 original size:19 final size:21
Alignment explanation
Indices: 7068673--7068729 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
7068663 ATTATAAATA
7068673 ATATTAATATATATAAATAGTG
1 ATATT-ATATATATAAATAGTG
*
7068695 ATATTATATATATATATA-TG
1 ATATTATATATATAAATAGTG
*
7068715 AT-TTATA-ATACAAAT
1 ATATTATATATATAAAT
7068730 TTAATTTTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 6 0.19
19 5 0.16
20 4 0.12
21 12 0.38
22 5 0.16
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (21 bp):
ATATTATATATATAAATAGTG
Found at i:7069097 original size:29 final size:28
Alignment explanation
Indices: 7069026--7069098 Score: 67
Period size: 30 Copynumber: 2.6 Consensus size: 28
7069016 AGAGTTTTAG
7069026 GAAA-TTTAGGAATTTAAGATTGTTTTT
1 GAAATTTTAGGAATTTAAGATTGTTTTT
* ** * *
7069053 GAGATTTTCAAAAATTTAGAGTTTTTTTTT
1 GAAATTTT-AGGAATTTA-AGATTGTTTTT
*
7069083 TAAATTTTAGGAATTT
1 GAAATTTTAGGAATTT
7069099 CAAAAAAATG
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
27 3 0.09
28 3 0.09
29 13 0.38
30 15 0.44
ACGTcount: A:0.33, C:0.01, G:0.15, T:0.51
Consensus pattern (28 bp):
GAAATTTTAGGAATTTAAGATTGTTTTT
Found at i:7070168 original size:37 final size:36
Alignment explanation
Indices: 7070106--7070228 Score: 102
Period size: 37 Copynumber: 3.3 Consensus size: 36
7070096 AAAGATCTAT
* * *
7070106 ATTCAATTAAAATGTGAACATATTATTACAATTTTAG
1 ATTCAATT-AAATATGAATATATTATTACAAATTTAG
* * *
7070143 ATTCGATTGAAATATGAATATATTATTTATAAATTTAT
1 ATTCAATT-AAATATGAATATATTA-TTACAAATTTAG
** * ** *
7070181 ATTTTATTAAATATAAATATATTATTTATGAATTTAT
1 ATTCAATTAAATATGAATATATTA-TTACAAATTTAG
7070218 ATTCAATTAAA
1 ATTCAATTAAA
7070229 AAAAAATTTA
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
37 57 0.79
38 15 0.21
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (36 bp):
ATTCAATTAAATATGAATATATTATTACAAATTTAG
Found at i:7070256 original size:36 final size:37
Alignment explanation
Indices: 7070159--7070257 Score: 128
Period size: 37 Copynumber: 2.7 Consensus size: 37
7070149 TTGAAATATG
* ** * *
7070159 AATATATTATTTATAAATTTATATTTTATTAAATATA
1 AATATATTATTTATGAATTTATATTCAATTAAAAAAA
7070196 AATATATTATTTATGAATTTATATTCAATTAAAAAAA
1 AATATATTATTTATGAATTTATATTCAATTAAAAAAA
* *
7070233 AATTTATTA-TTCTGAATTTATATTC
1 AATATATTATTTATGAATTTATATTC
7070258 GATTGTAATA
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
36 15 0.27
37 40 0.73
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (37 bp):
AATATATTATTTATGAATTTATATTCAATTAAAAAAA
Found at i:7073383 original size:20 final size:21
Alignment explanation
Indices: 7073336--7073392 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
7073326 AGGGTGTCAA
7073336 AGTGCATCCATGCACCTGCACT
1 AGTGCATCCATGCACCTG-ACT
*
7073358 AGTGCATCGATGCACCATG-C-
1 AGTGCATCCATGCACC-TGACT
7073378 AGTGCATCCATGCAC
1 AGTGCATCCATGCAC
7073393 TTCATTTCGA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.44
21 1 0.03
22 15 0.47
23 2 0.06
ACGTcount: A:0.25, C:0.33, G:0.21, T:0.21
Consensus pattern (21 bp):
AGTGCATCCATGCACCTGACT
Found at i:7073437 original size:20 final size:20
Alignment explanation
Indices: 7073412--7073504 Score: 132
Period size: 20 Copynumber: 4.7 Consensus size: 20
7073402 AATGCACTTA
**
7073412 GTGCATCGATGCATCCTTAT
1 GTGCATCGATGCATCCTGCT
* *
7073432 GTGCATCAATGCATCATGCT
1 GTGCATCGATGCATCCTGCT
7073452 GTGCATCGATGCATCCTGCT
1 GTGCATCGATGCATCCTGCT
*
7073472 GTGCATAGATGCATCCTGCT
1 GTGCATCGATGCATCCTGCT
*
7073492 GTGCATCCATGCA
1 GTGCATCGATGCA
7073505 CGAAGGCTGC
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 64 1.00
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.30
Consensus pattern (20 bp):
GTGCATCGATGCATCCTGCT
Found at i:7076882 original size:21 final size:21
Alignment explanation
Indices: 7076856--7076952 Score: 83
Period size: 21 Copynumber: 4.6 Consensus size: 21
7076846 GGTGTCAAAG
7076856 TGCATCCATGCACCCCTGCAA
1 TGCATCCATGCACCCCTGCAA
* * *
7076877 TGCATCTATGCACCCCGGCAG
1 TGCATCCATGCACCCCTGCAA
*
7076898 TGCATCTATGCA--CCTGCACTA
1 TGCATCCATGCACCCCTGCA--A
* * *
7076919 GTGCATCGATGCA-CCATGCAG
1 -TGCATCCATGCACCCCTGCAA
7076940 TGCATCCATGCAC
1 TGCATCCATGCAC
7076953 TTCATTTCGA
Statistics
Matches: 62, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
19 5 0.08
20 11 0.18
21 30 0.48
22 11 0.18
23 5 0.08
ACGTcount: A:0.23, C:0.36, G:0.20, T:0.22
Consensus pattern (21 bp):
TGCATCCATGCACCCCTGCAA
Found at i:7076901 original size:42 final size:42
Alignment explanation
Indices: 7076854--7076952 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 42
7076844 AGGGTGTCAA
* *
7076854 AGTGCATCCATGCACCCCTGCA-A-TGCATCTATGCACCCCGGC
1 AGTGCATCCATGCA-CCCTGCACAGTGCATCGATGCA-CCAGGC
* *
7076896 AGTGCATCTATGCA-CCTGCACTAGTGCATCGATGCACCATGC
1 AGTGCATCCATGCACCCTGCAC-AGTGCATCGATGCACCAGGC
7076938 AGTGCATCCATGCAC
1 AGTGCATCCATGCAC
7076953 TTCATTTCGA
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
40 6 0.12
42 31 0.65
43 11 0.23
ACGTcount: A:0.23, C:0.35, G:0.20, T:0.21
Consensus pattern (42 bp):
AGTGCATCCATGCACCCTGCACAGTGCATCGATGCACCAGGC
Found at i:7076924 original size:22 final size:23
Alignment explanation
Indices: 7076896--7076938 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
7076886 GCACCCCGGC
*
7076896 AGTGCATCTATGCACC-TGCACT
1 AGTGCATCGATGCACCATGCACT
7076918 AGTGCATCGATGCACCATGCA
1 AGTGCATCGATGCACCATGCA
7076939 GTGCATCCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (23 bp):
AGTGCATCGATGCACCATGCACT
Found at i:7076997 original size:20 final size:20
Alignment explanation
Indices: 7076972--7077065 Score: 143
Period size: 20 Copynumber: 4.7 Consensus size: 20
7076962 AATGCACTTA
*
7076972 GTGCATCGTTGCATCCTGAT
1 GTGCATCGATGCATCCTGAT
7076992 GTGCATCGATGCATCCTGAT
1 GTGCATCGATGCATCCTGAT
* *
7077012 GTGCATCAATGCATCCTGCT
1 GTGCATCGATGCATCCTGAT
*
7077032 GTGCATCGATGCATCCTGCT
1 GTGCATCGATGCATCCTGAT
*
7077052 GTGCATCCATGCAT
1 GTGCATCGATGCAT
7077066 GAAGGCTGCA
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 69 1.00
ACGTcount: A:0.18, C:0.28, G:0.23, T:0.31
Consensus pattern (20 bp):
GTGCATCGATGCATCCTGAT
Found at i:7077205 original size:20 final size:22
Alignment explanation
Indices: 7077167--7077206 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
7077157 TTTGAGTAGA
7077167 AAAATCATCCCCAAACGGCTCC
1 AAAATCATCCCCAAACGGCTCC
7077189 AAAA-CATCCCC-AACGGCT
1 AAAATCATCCCCAAACGGCT
7077207 ATATACAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.38, C:0.40, G:0.10, T:0.12
Consensus pattern (22 bp):
AAAATCATCCCCAAACGGCTCC
Found at i:7077484 original size:22 final size:22
Alignment explanation
Indices: 7077458--7077504 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
7077448 AAAGCTAGGG
7077458 AAAGGTTCTAGTTTAGCCCGGA
1 AAAGGTTCTAGTTTAGCCCGGA
7077480 AAAGGTTCTAGTTTAGCCCGGA
1 AAAGGTTCTAGTTTAGCCCGGA
7077502 AAA
1 AAA
7077505 ACTAGGGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (22 bp):
AAAGGTTCTAGTTTAGCCCGGA
Found at i:7082381 original size:54 final size:54
Alignment explanation
Indices: 7082298--7082488 Score: 271
Period size: 54 Copynumber: 3.6 Consensus size: 54
7082288 TTGACATATT
*
7082298 TTCATAATGAGTTTGTGAATTACCATATCGACACTATGTGTGCAATCCAC-GAAA
1 TTCATAATGAGTTTGTGAATTACCATATCGACACTATGTGTGCAACCCACAG-AA
* * *
7082352 TTCATAATGAGTTTTTGAATTACCGTATCGACACTATGTGTGCAACCCACATAA
1 TTCATAATGAGTTTGTGAATTACCATATCGACACTATGTGTGCAACCCACAGAA
* * *
7082406 TTCATAATAAGTTTTTGAATTACACAT-T-GACACTATGTGTGCAACCCATAGAA
1 TTCATAATGAGTTTGTGAATTAC-CATATCGACACTATGTGTGCAACCCACAGAA
*
7082459 TTCATAATGAGTTTGTGAATTTCCATATCG
1 TTCATAATGAGTTTGTGAATTACCATATCG
7082489 TTACTAAGGA
Statistics
Matches: 122, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
52 3 0.02
53 44 0.36
54 73 0.60
55 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (54 bp):
TTCATAATGAGTTTGTGAATTACCATATCGACACTATGTGTGCAACCCACAGAA
Found at i:7084202 original size:192 final size:194
Alignment explanation
Indices: 7083873--7084259 Score: 760
Period size: 192 Copynumber: 2.0 Consensus size: 194
7083863 CAACTAAATT
7083873 TTGTTGAAAGAATAAACCAAATTTTTTTTTCCGGTTTATTGCTGAAATTATTATTAATTCTAATT
1 TTGTTGAAAGAATAAACCAAATTTTTTTTTCCGGTTTATTGCTGAAATTATTATTAATTCTAATT
7083938 TTGTGTGTTAAAAAATCATGATTGTTAGTGACTATGAGTCACAACGAGAAGCTTGTGAAATTATG
66 TTGTGTGTTAAAAAATCATGATTGTTAGTGACTATGAGTCACAACGAGAAGCTTGTGAAATTATG
7084003 TGGATAGAATTGTAAGATGTGACAACATAAGATGTTCTACATTGTCATGTTGAATTTGGCCAAA
131 TGGATAGAATTGTAAGATGTGACAACATAAGATGTTCTACATTGTCATGTTGAATTTGGCCAAA
7084067 TTGTTGAAAGAATAAACCAAA-TTTTTTTT-CGGTTTATTGCTGAAATTATTATTAATTCTAATT
1 TTGTTGAAAGAATAAACCAAATTTTTTTTTCCGGTTTATTGCTGAAATTATTATTAATTCTAATT
7084130 TTGTGTGTTAAAAAATCATGATTGTTAGTGACTATGAGTCACAACGAGAAGCTTGTGAAATTATG
66 TTGTGTGTTAAAAAATCATGATTGTTAGTGACTATGAGTCACAACGAGAAGCTTGTGAAATTATG
7084195 TGGATAGAATTGTAAGATGTGACAACATAAGATGTTCTACATTGTCATGTTGAATTTGGCCAAA
131 TGGATAGAATTGTAAGATGTGACAACATAAGATGTTCTACATTGTCATGTTGAATTTGGCCAAA
7084259 T
1 T
7084260 ATCGGATGAT
Statistics
Matches: 193, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
192 164 0.85
193 8 0.04
194 21 0.11
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.38
Consensus pattern (194 bp):
TTGTTGAAAGAATAAACCAAATTTTTTTTTCCGGTTTATTGCTGAAATTATTATTAATTCTAATT
TTGTGTGTTAAAAAATCATGATTGTTAGTGACTATGAGTCACAACGAGAAGCTTGTGAAATTATG
TGGATAGAATTGTAAGATGTGACAACATAAGATGTTCTACATTGTCATGTTGAATTTGGCCAAA
Found at i:7086269 original size:37 final size:38
Alignment explanation
Indices: 7086130--7086273 Score: 141
Period size: 37 Copynumber: 3.8 Consensus size: 38
7086120 GATAATGTTC
*
7086130 TATTATTTAATG-ATTTATATTCAATTAAAATGTGAATA
1 TATTATTT-ATGAATTTATATTCAATTAAAATATGAATA
* ** * *
7086168 TATTA-TTATGAATTCATATTTGATTGAAATAGGAATA
1 TATTATTTATGAATTTATATTCAATTAAAATATGAATA
* * * ** *
7086205 TGTTATTTGTAAATTTATATTTTATT-AAATATAAATA
1 TATTATTTATGAATTTATATTCAATTAAAATATGAATA
*
7086242 TATTATTTATGAATTAATATTCAATTAAAATA
1 TATTATTTATGAATTTATATTCAATTAAAATA
7086274 CCAGTATAGT
Statistics
Matches: 84, Mismatches: 19, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
36 3 0.04
37 55 0.65
38 26 0.31
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (38 bp):
TATTATTTATGAATTTATATTCAATTAAAATATGAATA
Found at i:7090345 original size:15 final size:16
Alignment explanation
Indices: 7090325--7090355 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7090315 TGGCTTGAAA
7090325 GAAAATAAAA-AAAAT
1 GAAAATAAAAGAAAAT
7090340 GAAAATAAAAGAAAAT
1 GAAAATAAAAGAAAAT
7090356 AATTTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (16 bp):
GAAAATAAAAGAAAAT
Found at i:7092830 original size:8 final size:8
Alignment explanation
Indices: 7092817--7092857 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
7092807 TTAACAATTT
7092817 TACATATA
1 TACATATA
*
7092825 TACATACA
1 TACATATA
7092833 TACATATA
1 TACATATA
*
7092841 TATATATA
1 TACATATA
*
7092849 TATATATA
1 TACATATA
7092857 T
1 T
7092858 TAAAAAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (8 bp):
TACATATA
Done.